| 1 | @string{arfm    = {Annu.~Rev.~Fluid Mech.}} | @string{arfm    = {Annu.~Rev.~Fluid Mech.}} | 
| 2 | @string{bams    = {Bull.~Am.~Met.~Soc.}} | @string{bams    = {Bull.~Am.~Met.~Soc.}} | 
| 3 | @string{blm     = {Bound.~Layer~Meteorol.}} | @string{blm     = {Bound.~Layer~Meteorol.}} | 
| 4 |  | @string{climd   = {Clim.~Dynamics}} | 
| 5 | @string{jgr     = {J.~Geophys.~Res.}} | @string{jgr     = {J.~Geophys.~Res.}} | 
| 6 | @string{ijrs    = {Int.~J.~Remote Sensing}} | @string{ijrs    = {Int.~J.~Remote Sensing}} | 
| 7 | @string{jas     = {J.~Atmos.~Sci.}} | @string{jas     = {J.~Atmos.~Sci.}} | 
| 8 |  | @string{jam     = {J.~Appl.~Meteor.}} | 
| 9 | @string{jpo     = {J.~Phys.~Oceanogr.}} | @string{jpo     = {J.~Phys.~Oceanogr.}} | 
| 10 | @string{jclim   = {J.~Clim.}} | @string{jclim   = {J.~Clim.}} | 
| 11 |  | @string{jcp     = {J.~Comput.~Phys.}} | 
| 12 | @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}} | @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}} | 
| 13 | @string{jfm     = {J.~Fluid Mech.}} | @string{jfm     = {J.~Fluid Mech.}} | 
| 14 | @string{jaot    = {J.~Atmos.~Ocean.~Technol.}} | @string{jaot    = {J.~Atmos.~Ocean.~Technol.}} | 
| 15 | @string{jms     = {J.~Mar.~Sys.}} | @string{jms     = {J.~Mar.~Sys.}} | 
| 16 |  | @string{om      = {Ocean Modelling}} | 
| 17 | @string{gaos    = {Global Atmos.~Ocean System}} | @string{gaos    = {Global Atmos.~Ocean System}} | 
| 18 | @string{grl     = {Geophys.~Res.~Lett.}} | @string{grl     = {Geophys.~Res.~Lett.}} | 
| 19 | @string{dsr     = {Deep Sea Res.}} | @string{dsr     = {Deep Sea Res.}} | 
| 254 | pages          = {401 pp.}, | pages          = {401 pp.}, | 
| 255 | } | } | 
| 256 |  |  | 
| 257 |  | @incollection{gri:89, | 
| 258 |  | author         = {A. Griewank}, | 
| 259 |  | year           = 1989, | 
| 260 |  | title          = {On automatic differentiation}, | 
| 261 |  | booktitle      = {Mathematical Programming: Recent Developments and | 
| 262 |  | Applications}, | 
| 263 |  | pages          = {83--108}, | 
| 264 |  | editor         = {M. Iri and K. Tanabe}, | 
| 265 |  | publisher      = {Kluwer}, | 
| 266 |  | address        = {Dordrecht, NL}, | 
| 267 |  | } | 
| 268 |  |  | 
| 269 |  | @Article{gri:92, | 
| 270 |  | author =       {A.~Griewank}, | 
| 271 |  | title =        {Achieving logarithmic growth of temporal and spatial | 
| 272 |  | complexity in reverse {A}utomatic {D}ifferentiation}, | 
| 273 |  | journal       = {Optimization Methods and Software}, | 
| 274 |  | year          = {1992}, | 
| 275 |  | volume        = {1}, | 
| 276 |  | pages         = {35--54} | 
| 277 |  | } | 
| 278 |  |  | 
| 279 | @book{gri:00, | @book{gri:00, | 
| 280 | author         = {A. Griewank}, | author         = {A. Griewank}, | 
| 281 | title          = {Evaluating Derivatives. Principles and Techniques | title          = {Evaluating Derivatives. Principles and Techniques | 
| 308 | pages =        {241--248} | pages =        {241--248} | 
| 309 | } | } | 
| 310 |  |  | 
| 311 |  | @Article{held-suar:94, | 
| 312 |  | author         = {I.M. Held and M.J. Suarez}, | 
| 313 |  | year           = {1994}, | 
| 314 |  | title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models}, | 
| 315 |  | journal        = {Bulletin of the American Meteorological Society}, | 
| 316 |  | volume         = {75(10)}, | 
| 317 |  | pages          = {1825-1830} | 
| 318 |  | } | 
| 319 |  |  | 
| 320 | @Article{hil-eta:01, | @Article{hil-eta:01, | 
| 321 | author         = {C. Hill and M. Follows and V. Bugnion and | author         = {C. Hill and M. Follows and V. Bugnion and | 
| 322 | J. Marshall}, | J. Marshall}, | 
| 323 | year           = {2001}, | year           = {2002}, | 
| 324 | title          = {Spatial and Temporal Impacts of ocean general | title          = {Spatial and Temporal Impacts of ocean general | 
| 325 | circulation on carbon sequestration}, | circulation on carbon sequestration}, | 
| 326 | journal        = {Global Biogeochemical Cycles}, | journal        = {Global Biogeochemical Cycles}, | 
| 327 | note           = {submitted}, | note           = {submitted}, | 
| 328 | } | } | 
| 329 |  |  | 
| 330 |  | @ARTICLE{hib80, | 
| 331 |  | AUTHOR      = "W. D. {Hibler, III}", | 
| 332 |  | TITLE       = "Modeling a Variable Thickness Sea Ice Cover", | 
| 333 |  | JOURNAL     = mwr, | 
| 334 |  | YEAR        = 1980, | 
| 335 |  | VOLUME      = 1, | 
| 336 |  | PAGES       = "1943-1973" | 
| 337 |  | } | 
| 338 |  |  | 
| 339 | @Article{Holland75, | @Article{Holland75, | 
| 340 | author         = {W.R. Holland and L. B. Lin}, | author         = {W.R. Holland and L. B. Lin}, | 
| 341 | year           = {1975a}, | year           = {1975a}, | 
| 518 | volume         = {28}, | volume         = {28}, | 
| 519 | pages          = {215--248}, | pages          = {215--248}, | 
| 520 | } | } | 
| 521 |  |  | 
| 522 |  | %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies | 
| 523 |  | %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997. | 
| 524 |  | %% (Available from Unidata or in PostScript form by anonymous FTP from | 
| 525 |  | %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also | 
| 526 |  | %%   a hypertext version of the User's Guide available at | 
| 527 |  | %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's | 
| 528 |  | %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are | 
| 529 |  | %%   also available. | 
| 530 |  |  | 
| 531 |  | @TechReport{rew:97, | 
| 532 |  | author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies}, | 
| 533 |  | title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90}, | 
| 534 |  | An Interface for Data Access, Version 3}, | 
| 535 |  | institution =  {Unidata Program Center}, | 
| 536 |  | type =         {Report}, | 
| 537 |  | address =      {Boulder, Colorado}, | 
| 538 |  | year =         1997, | 
| 539 |  | note =         {http://www.unidata.ucar.edu/packages/netcdf/}, | 
| 540 |  | } | 
| 541 |  |  | 
| 542 |  |  | 
| 543 | @Article{res-eta:98, | @Article{res-eta:98, | 
| 544 | author         = {J.M. Restrepo and G.K. Leaf and A. Griewank}, | author         = {J.M. Restrepo and G.K. Leaf and A. Griewank}, | 
| 545 | year           = 1998, | year           = 1998, | 
| 773 | author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, | author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, | 
| 774 | title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean | title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean | 
| 775 | modeling}, | modeling}, | 
| 776 | journal =      {JGR}, | journal =      jgr, | 
| 777 | year =         1997, | year =         1997, | 
| 778 | volume =       102, | volume =       102, | 
| 779 | number =       {C3}, | number =       {C3}, | 
| 781 | } | } | 
| 782 |  |  | 
| 783 | @Article{marshall:97b, | @Article{marshall:97b, | 
| 784 | author =       {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise}, | author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, | 
| 785 | title =        {A finite-volume, incompressible Navier Stokes model for | title =        {A finite-volume, incompressible Navier Stokes model for | 
| 786 | studies of the ocean on parallel computers}, | studies of the ocean on parallel computers}, | 
| 787 | journal =      {JGR}, | journal =      jgr, | 
| 788 | year =         1997, | year =         1997, | 
| 789 | volume =       102, | volume =       102, | 
| 790 | number =       {C3}, | number =       {C3}, | 
| 795 | author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall}, | author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall}, | 
| 796 | title =        {Representation of topography by shaved cells in a height | title =        {Representation of topography by shaved cells in a height | 
| 797 | coordinate ocean model}, | coordinate ocean model}, | 
| 798 | journal =      {MWR}, | journal =      mwr, | 
| 799 | year =         1997, | year =         1997, | 
| 800 | volume =       125, | volume =       125, | 
| 801 | pages =        {2293-2315} | pages =        {2293-2315} | 
| 802 | } | } | 
| 803 |  |  | 
| 804 |  | @Article{adcroft:04a, | 
| 805 |  | author =       {Adcroft, A. and J.-M. Campin}, | 
| 806 |  | title =        {Re-scaled height coordinates for accurate representation | 
| 807 |  | of free-surface flows in ocean circulation models}, | 
| 808 |  | journal =      om, | 
| 809 |  | year =         2004, | 
| 810 |  | volume =       7, | 
| 811 |  | pages =        {269-284} | 
| 812 |  | } | 
| 813 |  |  | 
| 814 |  | @Article{adcroft:04b, | 
| 815 |  | author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall}, | 
| 816 |  | title =        {Implementation of an Atmosphere-Ocean General Circulation Model | 
| 817 |  | on the Expanded Spherical Cube}, | 
| 818 |  | journal =      mwr, | 
| 819 |  | year =         2004, | 
| 820 |  | volume =       132, | 
| 821 |  | pages =        {2845-2863} | 
| 822 |  | } | 
| 823 |  |  | 
| 824 |  | @Article{marshall:04, | 
| 825 |  | author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White}, | 
| 826 |  | title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms}, | 
| 827 |  | journal =      mwr, | 
| 828 |  | year =         2004, | 
| 829 |  | volume =       132, | 
| 830 |  | pages =        {2882-2894} | 
| 831 |  | } | 
| 832 |  |  | 
| 833 | @Article{visbeck:97, | @Article{visbeck:97, | 
| 834 | author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, | author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, | 
| 835 | title =        {Specification of eddy transfer coefficients in | title =        {Specification of eddy transfer coefficients in | 
| 836 | coarse-resolution ocean circulation models}, | coarse-resolution ocean circulation models}, | 
| 837 | journal =      {JPO}, | journal =      jpo, | 
| 838 | year =         1997, | year =         1997, | 
| 839 | volume =       27, | volume =       27, | 
| 840 | number =       3, | number =       3, | 
| 855 | } | } | 
| 856 |  |  | 
| 857 | @Article{marshall:98, | @Article{marshall:98, | 
| 858 | author =       {Marshall, J., Jones, H. and C. Hill}, | author =       {J. Marshall and H. Jones and C. Hill}, | 
| 859 | title =        {Efficient ocean modeling using non-hydrostatic algorithms}, | title =        {Efficient ocean modeling using non-hydrostatic algorithms}, | 
| 860 | journal =      {JMR}, | journal =      {JMR}, | 
| 861 | year =         1998, | year =         1998, | 
| 887 | author =       {Adcroft, A., Hill C. and J. Marshall}, | author =       {Adcroft, A., Hill C. and J. Marshall}, | 
| 888 | title =        {A new treatment of the Coriolis terms in C-grid models | title =        {A new treatment of the Coriolis terms in C-grid models | 
| 889 | at both high and low resolutions}, | at both high and low resolutions}, | 
| 890 | journal =      {MWR}, | journal =      mwr, | 
| 891 | year =         1999, | year =         1999, | 
| 892 | volume =       127, | volume =       127, | 
| 893 | pages =        {1928-1936} | pages =        {1928-1936} | 
| 896 | @InProceedings{hill:99, | @InProceedings{hill:99, | 
| 897 | author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, | author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, | 
| 898 | title =        {A Strategy for Terascale Climate Modeling}, | title =        {A Strategy for Terascale Climate Modeling}, | 
| 899 | booktitle =    {In Proceedings of the Eight ECMWF Workshop on the Use of Parallel Processors in Meteorology}, | booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, | 
| 900 | year =         1999 | year =         1999, | 
| 901 |  | pages = {406-425}, | 
| 902 |  | publisher =    {World Scientific}, | 
| 903 | } | } | 
| 904 |  |  | 
| 905 | @Article{wardle:00, | @Article{wardle:00, | 
| 906 | author =       {Wardle R. and Marshall J.}, | author =       {Wardle R. and Marshall J.}, | 
| 907 | title =        {Representation of eddies in primitive equation models by a PV flux}, | title =        {Representation of eddies in primitive equation models by a PV flux}, | 
| 908 | journal =      {JPO}, | journal =      jpo, | 
| 909 | year =         2000, | year =         2000, | 
| 910 | volume =       30, | volume =       30, | 
| 911 | number =       10, | number =       10, | 
| 916 | author =       {Adcroft, A. and J.-M. Campin}, | author =       {Adcroft, A. and J.-M. Campin}, | 
| 917 | title =        {Comparison of finite volume schemes and direct-space-time | title =        {Comparison of finite volume schemes and direct-space-time | 
| 918 | methods for ocean circulation models}, | methods for ocean circulation models}, | 
| 919 | journal =      {OM}, | journal =      om, | 
| 920 | year =         2002, | year =         2002, | 
| 921 | note =         {in preparation} | note =         {in preparation} | 
| 922 | } | } | 
| 923 |  |  | 
| 924 | @Article{adcroft:02, | @Article{adcroft:02, | 
| 925 | author =       {Adcroft et al.}, | author =       {Adcroft, A., et~al.}, | 
| 926 | title =        {Energy conversion in discrete numerical models}, | title =        {Energy conversion in discrete numerical models}, | 
| 927 | journal =      {OM}, | journal =      om, | 
| 928 | year =         2002, | year =         2002, | 
| 929 | note =         {in preparation} | note =         {in preparation} | 
| 930 | } | } | 
| 940 | volume =       17 | volume =       17 | 
| 941 | } | } | 
| 942 |  |  | 
| 943 |  | @Article{miller_white:84, | 
| 944 |  | author =       {Miller, M. J. and White, A. A.}, | 
| 945 |  | title =        {On the non-hydrostatic equations in pressure | 
| 946 |  | and sigma coordiantes}, | 
| 947 |  | journal =      qjrms, | 
| 948 |  | year =         1984, | 
| 949 |  | volume =       110, | 
| 950 |  | pages =        {515-533} | 
| 951 |  | } | 
| 952 |  |  | 
| 953 |  | @Article{white:89, | 
| 954 |  | author =       {White, A. A.}, | 
| 955 |  | title =        {An extended version of a nonhydrostatic, pressure coordiante model}, | 
| 956 |  | journal =      qjrms, | 
| 957 |  | year =         1989, | 
| 958 |  | volume =       115, | 
| 959 |  | pages =        {1243-1251} | 
| 960 |  | } | 
| 961 |  |  | 
| 962 | @Article{adcroft:98, | @Article{adcroft:98, | 
| 963 | author =       {Adcroft, A. and Marshall, D.}, | author =       {Adcroft, A. and Marshall, D.}, | 
| 964 | title =        {How slippery are piecewise-constant coastlines in numerical | title =        {How slippery are piecewise-constant coastlines in numerical | 
| 982 | author =       {Griffies, S.,M. and Hallberg, R.,W.}, | author =       {Griffies, S.,M. and Hallberg, R.,W.}, | 
| 983 | title =        {Biharmonic friction with a Smagorinsky-like viscosity for | title =        {Biharmonic friction with a Smagorinsky-like viscosity for | 
| 984 | use in large-scale eddy-permitting ocean models}, | use in large-scale eddy-permitting ocean models}, | 
| 985 | journal =      {MWR}, | journal =      mwr, | 
| 986 | year =         2000, | year =         2000, | 
| 987 | volume =       128, | volume =       128, | 
| 988 | number =       8, | number =       8, | 
| 993 | author =       {Wajsowicz, R.}, | author =       {Wajsowicz, R.}, | 
| 994 | title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR | title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR | 
| 995 | FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION}, | FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION}, | 
| 996 | journal =      {JCP}, | journal =      jcp, | 
| 997 | year =         1993, | year =         1993, | 
| 998 | volume =       105, | volume =       105, | 
| 999 | number =       2, | number =       2, | 
| 1001 | } | } | 
| 1002 |  |  | 
| 1003 | @Article{campin:02, | @Article{campin:02, | 
| 1004 | author =       {Campin et al.}, | author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall}, | 
| 1005 | title =        {Conservation of properties in a free-surface model}, | title =        {Conservation of properties in a free-surface model}, | 
| 1006 | journal =      {OM}, | journal =      om, | 
| 1007 | year =         2002, | year =         2004, | 
| 1008 | note =         {in preparation} | volume =       6, | 
| 1009 |  | pages =        {221-244} | 
| 1010 | } | } | 
| 1011 |  |  | 
| 1012 | @Article{dm:95, | @Article{dm:95, | 
| 1013 | author =       {Danabasoglu, G. and McWilliams J.C.}, | author =       {Danabasoglu, G. and McWilliams J.C.}, | 
| 1014 | title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports}, | title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports}, | 
| 1015 | journal =      {JC}, | journal =      jclim, | 
| 1016 | year =         1995, | year =         1995, | 
| 1017 | volume =       8, | volume =       8, | 
| 1018 | number =       12, | number =       12, | 
| 1022 | @Article{ldd:97, | @Article{ldd:97, | 
| 1023 | author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.}, | author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.}, | 
| 1024 | title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology}, | title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology}, | 
| 1025 | journal =      {JPO}, | journal =      jpo, | 
| 1026 | year =         1997, | year =         1997, | 
| 1027 | volume =       27, | volume =       27, | 
| 1028 | number =       11, | number =       11, | 
| 1033 | author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.}, | author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.}, | 
| 1034 | title =        {Mechanisms for spreading of Mediterranean water in | title =        {Mechanisms for spreading of Mediterranean water in | 
| 1035 | coarse-resolution numerical models}, | coarse-resolution numerical models}, | 
| 1036 | journal =      {JPO}, | journal =      jpo, | 
| 1037 | year =         1999, | year =         1999, | 
| 1038 | volume =       29, | volume =       29, | 
| 1039 | number =       8, | number =       8, | 
| 1040 | pages =        {1682-1700} | pages =        {1682-1700} | 
| 1041 | } | } | 
| 1042 |  |  | 
| 1043 | @Article{roe:85, | @incollection{roe:85, | 
| 1044 | author =       {Roe, P.L.}, | author         = {P.L. Roe}, | 
| 1045 | title =        {Some contributions to the modeling of discontinuous flows}, | year           = 1985, | 
| 1046 | journal =      {Lect. Notes Appl. Math.}, | title          = {Some contributions to the modelling of discontinuous flows}, | 
| 1047 | year =         1985, | booktitle      = {Large-Scale Computations in Fluid Mechanics}, | 
| 1048 | volume =       22, | series         = {Lectures in Applied Mathematics}, | 
| 1049 | pages =        {163-193} | volume         = 22, | 
| 1050 |  | pages          = {163-193}, | 
| 1051 |  | editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville}, | 
| 1052 |  | publisher      = {American Mathematical Society}, | 
| 1053 |  | address        = {Providence, RI}, | 
| 1054 |  | } | 
| 1055 |  |  | 
| 1056 |  | @Article{trenberth90, | 
| 1057 |  | author =       {K. M. Trenberth and J. Olson and W. G. Large}, | 
| 1058 |  | title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind | 
| 1059 |  | Stress}, | 
| 1060 |  | journal =      jpo, | 
| 1061 |  | year =         1990, | 
| 1062 |  | volume =       20, | 
| 1063 |  | pages =        {1742--1760} | 
| 1064 |  | } | 
| 1065 |  |  | 
| 1066 |  | @Article{molteni:03, | 
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