Contents of /MITgcm_contrib/nesting_sannino/utils/notes_run

To run on beagle.darwinproject.mit.edu :

#-- where executables have been built:
#   (see file 'utils/notes_bld' on how to build) 
BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting

#-- where to run:
RUN_DIR=/scratch/jmc/nesting
(mkdir $RUN_DIR)

#==== set-up: ====
Note: 1) driver is still using hard-coded absolute path
      (to /home/sannino/NESTING/ , subdir: PARENT/ & CHILD/ )
      to read parent and chilf grid files for parent <--> child interpolation
      2) forcing is over simplified to minimise Nb/size of input files.

cd $RUN_DIR

cvs co -P -d input  MITgcm_contrib/nesting_sannino/input
cvs co -P -d params MITgcm_contrib/nesting_sannino/params
cvs co -P -d utils  MITgcm_contrib/nesting_sannino/utils

( mkdir run_driv run_med run_gib )

cd run_driv
  ln -s $BLD_DIR/bld_driver/mitgcmuv .
cd ..

cd run_med
  ln -s $BLD_DIR/bld_parent/mitgcmuv .
  ln -s ../input/med/* .
  ln -s ../params/med/* .
cd ..

cd run_gib
  ln -s $BLD_DIR/bld_child/mitgcmuv .
  ln -s ../input/gib/* .
  ln -s ../params/gib/* .
cd ..

#==== running: ====
#-- on beagle:
> qrsh -pe mpich_mx 64

then do "qstat" to get the job number: JOB_IB

#-- on compute node:
> module load mitgcm
#- get the file which contains the list of nodes:
> ls -l /tmp/$JOB_ID.1.darwin/machines

> cd $RUN_DIR

#- to make "pgfile":
> utils/mk_pgfile.sh /tmp/$JOB_ID.1.darwin/machines

#- to run:
> mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp

# Note: Until now, this command will not finish since the driver does not know 
#       many iterations to do. Needs to kill (or Ctrl C) the mpirun process 
#       when parent and child are done.

#- to save all the output in new dir "res_new"
> utils/move_nest_outp res_new
1	To run on beagle.darwinproject.mit.edu :
2
3	#-- where executables have been built:
4	# (see file 'utils/notes_bld' on how to build)
5	BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting
6
7	#-- where to run:
8	RUN_DIR=/scratch/jmc/nesting
9	(mkdir $RUN_DIR)
10
11	#==== set-up: ====
12	Note: 1) driver is still using hard-coded absolute path
13	(to /home/sannino/NESTING/ , subdir: PARENT/ & CHILD/ )
14	to read parent and chilf grid files for parent <--> child interpolation
15	2) forcing is over simplified to minimise Nb/size of input files.
16
17	cd $RUN_DIR
18
19	cvs co -P -d input MITgcm_contrib/nesting_sannino/input
20	cvs co -P -d params MITgcm_contrib/nesting_sannino/params
21	cvs co -P -d utils MITgcm_contrib/nesting_sannino/utils
22
23	( mkdir run_driv run_med run_gib )
24
25	cd run_driv
26	ln -s $BLD_DIR/bld_driver/mitgcmuv .
27	cd ..
28
29	cd run_med
30	ln -s $BLD_DIR/bld_parent/mitgcmuv .
31	ln -s ../input/med/* .
32	ln -s ../params/med/* .
33	cd ..
34
35	cd run_gib
36	ln -s $BLD_DIR/bld_child/mitgcmuv .
37	ln -s ../input/gib/* .
38	ln -s ../params/gib/* .
39	cd ..
40
41	#==== running: ====
42	#-- on beagle:
43	> qrsh -pe mpich_mx 64
44
45	then do "qstat" to get the job number: JOB_IB
46
47	#-- on compute node:
48	> module load mitgcm
49	#- get the file which contains the list of nodes:
50	> ls -l /tmp/$JOB_ID.1.darwin/machines
51
52	> cd $RUN_DIR
53
54	#- to make "pgfile":
55	> utils/mk_pgfile.sh /tmp/$JOB_ID.1.darwin/machines
56
57	#- to run:
58	> mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp
59
60	# Note: Until now, this command will not finish since the driver does not know
61	# many iterations to do. Needs to kill (or Ctrl C) the mpirun process
62	# when parent and child are done.
63
64	#- to save all the output in new dir "res_new"
65	> utils/move_nest_outp res_new