Annotation of /MITgcm_contrib/nesting_sannino/utils/notes_run

To run on beagle.darwinproject.mit.edu :

#-- where executables have been built:
#   (see file 'utils/notes_bld' on how to build) 
BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting

#-- where to run:
RUN_DIR=/scratch/jmc/nesting
(mkdir $RUN_DIR)

#==== set-up: ====
Note: 1) driver is still using hard-coded absolute path
      (to /home/sannino/NESTING/ , subdir: PARENT/ & CHILD/ )
      to read parent and chilf grid files for parent <--> child interpolation
      2) forcing is over simplified to minimise Nb/size of input files.

cd $RUN_DIR

cvs co -P -d input  MITgcm_contrib/nesting_sannino/input
cvs co -P -d params MITgcm_contrib/nesting_sannino/params
cvs co -P -d utils  MITgcm_contrib/nesting_sannino/utils

( mkdir run_driv run_med run_gib )

cd run_driv
  ln -s $BLD_DIR/bld_driver/mitgcmuv .
cd ..

cd run_med
  ln -s $BLD_DIR/bld_parent/mitgcmuv .
  ln -s ../input/med/* .
  ln -s ../params/med/* .
cd ..

cd run_gib
  ln -s $BLD_DIR/bld_child/mitgcmuv .
  ln -s ../input/gib/* .
  ln -s ../params/gib/* .
cd ..

#==== running: ====
#-- on beagle:
> qrsh -pe mpich_mx 64

then do "qstat" to get the job number: JOB_IB

#-- on compute node:
> module load mitgcm
#- get the file which contains the list of nodes:
> ls -l /tmp/$JOB_ID.1.darwin/machines

> cd $RUN_DIR

#- to make "pgfile":
> utils/mk_pgfile.sh /tmp/$JOB_ID.1.darwin/machines

#- to run:
> mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp

# Note: Until now, this command will not finish since the driver does not know 
#       many iterations to do. Needs to kill (or Ctrl C) the mpirun process 
#       when parent and child are done.

#- to save all the output in new dir "res_new"
> utils/move_nest_outp res_new
1	jmc	1.1	To run on beagle.darwinproject.mit.edu :
2
3			#-- where executables have been built:
4			# (see file 'utils/notes_bld' on how to build)
5			BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting
6
7			#-- where to run:
8			RUN_DIR=/scratch/jmc/nesting
9			(mkdir $RUN_DIR)
10
11			#==== set-up: ====
12			Note: 1) driver is still using hard-coded absolute path
13			(to /home/sannino/NESTING/ , subdir: PARENT/ & CHILD/ )
14			to read parent and chilf grid files for parent <--> child interpolation
15			2) forcing is over simplified to minimise Nb/size of input files.
16
17			cd $RUN_DIR
18
19			cvs co -P -d input MITgcm_contrib/nesting_sannino/input
20			cvs co -P -d params MITgcm_contrib/nesting_sannino/params
21			cvs co -P -d utils MITgcm_contrib/nesting_sannino/utils
22
23			( mkdir run_driv run_med run_gib )
24
25			cd run_driv
26			ln -s $BLD_DIR/bld_driver/mitgcmuv .
27			cd ..
28
29			cd run_med
30			ln -s $BLD_DIR/bld_parent/mitgcmuv .
31			ln -s ../input/med/* .
32			ln -s ../params/med/* .
33			cd ..
34
35			cd run_gib
36			ln -s $BLD_DIR/bld_child/mitgcmuv .
37			ln -s ../input/gib/* .
38			ln -s ../params/gib/* .
39			cd ..
40
41			#==== running: ====
42			#-- on beagle:
43			> qrsh -pe mpich_mx 64
44
45			then do "qstat" to get the job number: JOB_IB
46
47			#-- on compute node:
48			> module load mitgcm
49			#- get the file which contains the list of nodes:
50			> ls -l /tmp/$JOB_ID.1.darwin/machines
51
52			> cd $RUN_DIR
53
54			#- to make "pgfile":
55			> utils/mk_pgfile.sh /tmp/$JOB_ID.1.darwin/machines
56
57			#- to run:
58			> mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp
59
60			# Note: Until now, this command will not finish since the driver does not know
61			# many iterations to do. Needs to kill (or Ctrl C) the mpirun process
62			# when parent and child are done.
63
64			#- to save all the output in new dir "res_new"
65			> utils/move_nest_outp res_new