/[MITgcm]/MITgcm_contrib/jmc_script/README
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Contents of /MITgcm_contrib/jmc_script/README

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Revision 1.18 - (show annotations) (download)
Thu Mar 8 18:55:29 2018 UTC (2 years ago) by jmc
Branch: MAIN
CVS Tags: HEAD
Changes since 1.17: +1 -0 lines
add one empty line (to test)

1 Some basic scripts are gather here.
2
3 a) the restart test: "2+2=4"
4
5 script: tst_2+2
6 - to use in a run dir. after a successful "testreport"
7 - input argument: '0','1','2','3','4' or 'All':
8 proceed step by step or all steps at once
9 - tst_2+2 (no argument) -> print "usage"
10 - know problems: specific restart procedure (with fizhi pkg or offline pkg)
11 not yet implemented
12
13 script: do_test_2+2
14 - call restart test "tst_2+2" multiple times, in every test experiment.
15 - needs to be in MITgcm/verification (with a copy of tst_2+2i script)
16 and can only be used after a successful "testreport"
17 - do_test_2+2 -help -> print "usage"
18
19 NOTE: scripts "tst_2+2" & "do_test_2+2" have been moved (Dec 25, 2007)
20 to: MITgcm/tools/
21
22 script: tst_2+2_cpl
23 = version of tst_2+2 adapted for coupled set-up (verification/cpl_aim+ocn)
24
25 b) PBS-batch script that re-submit itself (loop).
26 script: runScript
27
28 - used (and tested) on myrinet-3 cluster.
29 - suffer from a lack of meaningful comments.
30 - not specially design to be general and obviously
31 need to be modified/customized for each set-up.
32
33 c) A short script to split the ASCII Diagnostics-Stats output file
34 into separated files (one per field) that are easy to read/load
35 (e.g., in matlab, just use "load" command)
36 script: extract_StD
37 no known dependency
38 + A matlab script to load in 1 array all the separated files:
39 matlab-script: read_StD.m
40 no known dependency
41 + 2 example scripts to make simple plots from Stat-Diags output:
42 matlab-script: grph_StD.m (uses read_StD.m)
43 matlab-script: plot_StD.m (uses read_StD.m, c_levs.m)
44
45 d) script: rn_pickup
46 - Rename 'pickup*.ckpt[A,B].*' files to 'pickup*.[10-digits-iter].*'
47 with several selection options.
48 - rn_pickup (no argument) -> print "usage"
49
50 e) script: mk_mkfile
51 - run genmake2 with the same options as when "Makefile" was generated
52 (needs an existing previous "Makefile") ; this replaces "make makefile".
53 in addition, link *_mpi files from the MODS directory when -mpi was
54 used to generate the previous Makefile.
55
56 f) script: derive_other_types
57 from 1 src file, derive other type (R4,RS,RL,RS) version. For now, can
58 only be applied to the 4 src files: "mdsio_pass_r{4,8}tor{l,s}.F"
59
60 g) script: mk_options_list
61 generate list of CPP Options used in Fortran source files

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