/[MITgcm]/MITgcm_contrib/jmc_script/README
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Revision 1.18 - (hide annotations) (download)
Thu Mar 8 18:55:29 2018 UTC (6 years ago) by jmc
Branch: MAIN
Changes since 1.17: +1 -0 lines
add one empty line (to test)

1 jmc 1.6 Some basic scripts are gather here.
2    
3 jmc 1.14 a) the restart test: "2+2=4"
4 jmc 1.6
5     script: tst_2+2
6     - to use in a run dir. after a successful "testreport"
7     - input argument: '0','1','2','3','4' or 'All':
8     proceed step by step or all steps at once
9     - tst_2+2 (no argument) -> print "usage"
10     - know problems: specific restart procedure (with fizhi pkg or offline pkg)
11     not yet implemented
12    
13     script: do_test_2+2
14     - call restart test "tst_2+2" multiple times, in every test experiment.
15     - needs to be in MITgcm/verification (with a copy of tst_2+2i script)
16     and can only be used after a successful "testreport"
17     - do_test_2+2 -help -> print "usage"
18 jmc 1.1
19 jmc 1.11 NOTE: scripts "tst_2+2" & "do_test_2+2" have been moved (Dec 25, 2007)
20 jmc 1.17 to: MITgcm/tools/
21 jmc 1.7
22 jmc 1.5 script: tst_2+2_cpl
23 jmc 1.6 = version of tst_2+2 adapted for coupled set-up (verification/cpl_aim+ocn)
24 jmc 1.5
25 jmc 1.1 b) PBS-batch script that re-submit itself (loop).
26     script: runScript
27    
28 jmc 1.6 - used (and tested) on myrinet-3 cluster.
29     - suffer from a lack of meaningful comments.
30     - not specially design to be general and obviously
31     need to be modified/customized for each set-up.
32    
33 jmc 1.3 c) A short script to split the ASCII Diagnostics-Stats output file
34 jmc 1.6 into separated files (one per field) that are easy to read/load
35 jmc 1.3 (e.g., in matlab, just use "load" command)
36     script: extract_StD
37     no known dependency
38 jmc 1.7 + A matlab script to load in 1 array all the separated files:
39     matlab-script: read_StD.m
40 jmc 1.4 no known dependency
41 jmc 1.7 + 2 example scripts to make simple plots from Stat-Diags output:
42     matlab-script: grph_StD.m (uses read_StD.m)
43 jmc 1.8 matlab-script: plot_StD.m (uses read_StD.m, c_levs.m)
44 jmc 1.3
45 jmc 1.6 d) script: rn_pickup
46     - Rename 'pickup*.ckpt[A,B].*' files to 'pickup*.[10-digits-iter].*'
47 jmc 1.13 with several selection options.
48 jmc 1.6 - rn_pickup (no argument) -> print "usage"
49 jmc 1.9
50     e) script: mk_mkfile
51     - run genmake2 with the same options as when "Makefile" was generated
52     (needs an existing previous "Makefile") ; this replaces "make makefile".
53 jmc 1.12 in addition, link *_mpi files from the MODS directory when -mpi was
54 jmc 1.9 used to generate the previous Makefile.
55 jmc 1.10
56     f) script: derive_other_types
57 jmc 1.12 from 1 src file, derive other type (R4,RS,RL,RS) version. For now, can
58 jmc 1.10 only be applied to the 4 src files: "mdsio_pass_r{4,8}tor{l,s}.F"
59 jmc 1.15
60     g) script: mk_options_list
61 jmc 1.16 generate list of CPP Options used in Fortran source files

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