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4     \chapter{Model Uses}
6     To date, the MITgcm model has been used for number of purposes. The
7     following papers are an incomplete yet fairly broad sample of MITgcm
8     applications:
10     \begin{itemize}
12     \item R.S. Gross and I. Fukumori and D. Menemenlis (2003).
13     Atmospheric and oceanic excitation of the Earth's wobbles during 1980-2000.
14     {\it Journal of Geophysical Research-Solid Earth}, vol.108.
16     \item M.A. Spall and R.S. Pickart (2003).
17     Wind-driven recirculations and exchange in the Labrador and Irminger Seas.
18     {\it Journal of Physical Oceanography}, vol.33, pp.1829--1845.
20     \item B. Ferron and J. Marotzke (2003).
21     Impact of 4D-variational assimilation of WOCE hydrography on the
22     meridional circulation of the Indian Ocean. {\it Deep-Sea Research Part
23     II-Topical Studies in Oceanography}, vol.50, pp.2005--2021.
25     \item G.A. McKinley and M.J. Follows and J. Marshall and S.M. Fan (2003).
26     Interannual variability of air-sea O-2 fluxes and the determination of
27     CO2 sinks using atmospheric O-2/N-2. {\it Geophysical Research Letters},
28     vol.30.
30     \item B.Y. Huang and P.H. Stone and A.P. Sokolov and I.V. Kamenkovich
31     (2003). The deep-ocean heat uptake in transient climate change. {\it Journal
32     of Climate}, vol.16, pp.1352--1363.
34     \item G. de Coetlogon and C. Frankignoul (2003). The persistence of winter
35     sea surface temperature in the North Atlantic. {\it Journal of Climate},
36     vol.16, pp.1364--1377.
38     \item K.H. Nisancioglu and M.E. Raymo and P.H. Stone (2003).
39     Reorganization of Miocene deep water circulation in response to the
40     shoaling of the Central American Seaway. {\it Paleoceanography}, vol.18.
42     \item T. Radko and J. Marshall (2003). Equilibration of a Warm Pumped Lens
43     on a beta plane. {\it Journal of Physical Oceanography}, vol.33, pp.885--899.
45     \item T. Stipa (2002). The dynamics of the N/P ratio and stratification in
46     a large nitrogen-limited estuary as a result of upwelling: a tendency
47     for offshore Nodularia blooms. {\it Hydrobiologia}, vol.487, pp.219--227.
49     \item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P.
50     Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall
51     (2003). Volume, heat, and freshwater transports of the global ocean
52     circulation 1993-2000, estimated from a general circulation model
53     constrained by World Ocean Circulation Experiment (WOCE) data. {\it Journal
54     of Geophysical Research-Oceans}, vol.108.
56     \item P. Heimbach and C. Hill and R. Giering (2002). Automatic generation
57     of efficient adjoint code for a parallel Navier-Stokes solver.
58     {\it Computational Science-ICCS 2002, PT II, Proceedings}, vol.2330,
59     pp.1019--1028.
61     \item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P.
62     Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall
63     (2002). Global ocean circulation during 1992-1997, estimated from ocean
64     observations and a general circulation model. {\it Journal of Geophysical
65     Research-Oceans}, vol.107.
67     \item M. Solovev and P.H. Stone and P. Malanotte-Rizzoli (2002).
68     Assessment of mesoscale eddy parameterizations for a single-basin
69     coarse-resolution ocean model. {\it Journal of Geophysical Research-Oceans},
70     vol.107.
72     \item C. Herbaut and J. Sirven and S. Fevrier (2002). Response of a
73     simplified oceanic general circulation model to idealized NAO-like
74     stochastic forcing. {\it Journal of Physical Oceanography}, vol.32,
75     pp.3182--3192.
77     \item C. Wunsch (2002). Oceanic age and transient tracers: Analytical and
78     numerical solutions. {\it Journal of Geophysical Research-Oceans}, vol.107.
80     \item J. Sirven and C. Frankignoul and D. de Coetlogon and V. Taillandier
81     (2002). Spectrum of wind-driven baroclinic fluctuations of the ocean in
82     the midlatitudes. {\it Journal of Physical Oceanography}, vol.32,
83     pp.2405--2417.
85     \item R. Zhang and M. Follows and J. Marshall (2002). Mechanisms of
86     thermohaline mode switching with application to warm equable climates.
87     {\it Journal of Climate}, vol.15, pp.2056--2072.
89     \item G. Brostrom (2002). On advection and diffusion of plankton in coarse
90     resolution ocean models. {\it Journal of Marine Systems}, vol.35, pp.99--110.
92     \item T. Lee and I. Fukumori and D. Menemenlis and Z.F. Xing and L.L. Fu
93     (2002). Effects of the Indonesian Throughflow on the Pacific and Indian
94     oceans. {\it Journal of Physical Oceanography}, vol.32, pp.1404--1429.
97     \item C. Herbaut and J. Marshall (2002). Mechanisms of buoyancy transport
98     through mixed layers and statistical signatures from isobaric floats.
99     {\it Journal of Physical Oceanography}, vol.32, pp.545--557.
101     \item J. Marshall and H. Jones and R. Karsten and R. Wardle (2002). Can
102     eddies set ocean stratification?, {\it Journal of Physical Oceanography},
103     vol.32, pp.26--38.
105     \item C. Herbaut and J. Sirven and A. Czaja (2001). An idealized model
106     study of the mass and heat transports between the subpolar and
107     subtropical gyres. {\it Journal of Physical Oceanography}, vol.31,
108     pp.2903--2916.
110     \item R.H. Kase and A. Biastoch and D.B. Stammer (2001). On the Mid-Depth
111     Circulation in the Labrador and Irminger Seas. {\it Geophysical Research
112     Letters}, vol.28, pp.3433--3436.
114     \item R. Zhang and M.J. Follows and J.P. Grotzinger and J. Marshall
115     (2001). Could the Late Permian deep ocean have been anoxic?.
116     {\it Paleoceanography}, vol.16, pp.317--329.
118     \item A. Adcroft and J.R. Scott and J. Marotzke (2001). Impact of
119     geothermal heating on the global ocean circulation. {\it Geophysical Research
120     Letters}, vol.28, pp.1735--1738.
122     \item J. Marshall and D. Jamous and J. Nilsson (2001). Entry, flux, and
123     exit of potential vorticity in ocean circulation. {\it Journal of Physical
124     Oceanography}, vol.31, pp.777--789.
126     \item A. Mahadevan (2001). An analysis of bomb radiocarbon trends in the
127     Pacific. {\it Marine Chemistry}, vol.73, pp.273--290.
130     \item G. Brostrom (2000). The role of the annual cycles for the air-sea
131     exchange of CO2. {\it Marine Chemistry}, vol.72, pp.151--169.
133     \item Y.H. Zhou and H.Q. Wu and N.H. Yu and D.W. Zheng (2000). Excitation
134     of seasonal polar motion by atmospheric and oceanic angular momentums.
135     {\it Progress in Natural Science}, vol.10, pp.931--936.
137     \item R. Wardle and J. Marshall (2000). Representation of eddies in
138     primitive equation models by a PV flux. {\it Journal of Physical
139     Oceanography}, vol.30, pp.2481--2503.
141     \item P.S. Polito and O.T. Sato and W.T. Liu (2000). Characterization and
142     validation of the heat storage variability from TOPEX/Poseidon at four
143     oceanographic sites. {\it Journal of Geophysical Research-Oceans}, vol.105,
144     pp.16911--16921.
146     \item R.M. Ponte and D. Stammer (2000). Global and regional axial ocean
147     angular momentum signals and length-of-day variations (1985-1996).
148     {\it Journal of Geophysical Research-Oceans}, vol.105, pp.17161--17171.
150     \item J. Wunsch (2000). Oceanic influence on the annual polar motion.
151     {\it Journal of GEODYNAMICS}, vol.30, pp.389--399.
153     \item D. Menemenlis and M. Chechelnitsky (2000). Error estimates for an
154     ocean general circulation model from altimeter and acoustic tomography
155     data. {\it Monthly Weather Review}, vol.128, pp.763--778.
157     \item Y.H. Zhou and D.W. Zheng and N.H. Yu and H.Q. Wu (2000). Excitation
158     of annual polar motion by atmosphere and ocean. {\it Chinese Science
159     Bulletin}, vol.45, pp.139--142.
161     \item J. Marotzke and R. Giering and K.Q. Zhang and D. Stammer and C. Hill
162     and T. Lee (1999). Construction of the adjoint MIT ocean general
163     circulation model and application to Atlantic heat transport
164     sensitivity. {\it Journal of Geophysical Research-Oceans}, vol.104,
165     pp.29529--29547.
167     \item R.M. Ponte and D. Stammer (1999). Role of ocean currents and bottom
168     pressure variability on seasonal polar motion. {\it Journal of Geophysical
169     Research-Oceans}, vol.104, pp.23393--23409.
171     \item J. Nastula and R.M. Ponte (1999). Further evidence for oceanic
172     excitation of polar motion. {\it Geophysical Journal International}, vol.139,
173     pp.123--130.
175     \item K.Q. Zhang and J. Marotzke (1999). The importance of open-boundary
176     estimation for an Indian Ocean GCM-data synthesis. {\it Journal of Marine
177     Research}, vol.57, pp.305--334.
179     \item J. Marshall and D. Jamous and J. Nilsson (1999). Reconciling
180     thermodynamic and dynamic methods of computation of water-mass
181     transformation rates. {\it Deep-Sea Research PART I-Oceanographic Research
182     Papers}, vol.46, pp.545--572.
184     \item J. Marshall and F. Schott (1999). Open-ocean convection:
185     Observations, theory, and models. {\it Reviews of Geophysics}, vol.37,
186     pp.1--64.
188     \item J. Marshall and H. Jones and C. Hill (1998). Efficient ocean
189     modeling using non-hydrostatic algorithms. {\it Journal of Marine Systems},
190     vol.18, pp.115--134.
192     \item A.B. Baggeroer and T.G. Birdsall and C. Clark and J.A. Colosi and
193     B.D. Cornuelle and D. Costa and B.D. Dushaw and M. Dzieciuch and A.M.G.
194     Forbes and C. Hill and B.M. Howe and J. Marshall and D. Menemenlis and
195     J.A. Mercer and K. Metzger and W. Munk and R.C. Spindel and D. Stammer
196     and P.F. Worcester and C. Wunsch (1998). Ocean climate change:
197     Comparison of acoustic tomography, satellite altimetry, and modeling.
198     {\it Science}, vol.281, pp.1327--1332.
200     \item C. Wunsch and D. Stammer (1998). Satellite altimetry, the marine
201     geoid, and the oceanic general circulation. {\it Annual Review of Earth and
202     Planetary Sciences}, vol.26, pp.219--253.
204     \item A. Shaw and Arvind and K.C. Cho and C. Hill and R.P. Johnson and J.
205     Marshall (1998). A comparison of implicitly parallel multithreaded and
206     data-parallel implementations of an ocean model. {\it Journal of Parallel and
207     Distributed Computing}, vol.48, pp.1--51.
209     \item T.W.N. Haine and J. Marshall (1998). Gravitational, symmetric, and
210     baroclinic instability of the ocean mixed layer. {\it Journal of Physical
211     Oceanography}, vol.28, pp.634--658.
213     \item R.M. Ponte and D. Stammer and J. Marshall (1998). Oceanic signals in
214     observed motions of the Earth's pole of rotation. {\it Nature}, vol.391,
215     pp.476--479.
217     \item D. Menemenlis and C. Wunsch (1997). Linearization of an oceanic
218     general circulation model for data assimilation and climate studies.
219     {\it Journal of Atmospheric and Oceanic Technology}, vol.14, pp.1420--1443.
221     \item H. Jones and J. Marshall (1997). Restratification after deep
222     convection. {\it Journal of Physical Oceanography}, vol.27, pp.2276--2287.
224     \item S.R. Jayne and R. Tokmakian (1997). Forcing and sampling of ocean
225     general circulation models: Impact of high-frequency motions. {\it Journal of
226     Physical Oceanography}, vol.27, pp.1173--1179.
228     \end{itemize}

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