| 1 |
#!/bin/sh |
| 2 |
|
| 3 |
compare_lines() |
| 4 |
{ |
| 5 |
# use codelet to compare lines |
| 6 |
if [ $verbose -gt 1 ]; then |
| 7 |
cat tmp3.txt 1>&2 |
| 8 |
fi |
| 9 |
return `./a.out < tmp3.txt` |
| 10 |
} |
| 11 |
|
| 12 |
testoutput_for_prop() |
| 13 |
{ |
| 14 |
# testoutput_for_prop dir s1 label subdir |
| 15 |
# |
| 16 |
# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
| 17 |
# using search strings s1 and text label |
| 18 |
|
| 19 |
if [ $debug -gt 0 ]; then |
| 20 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
| 21 |
fi |
| 22 |
if [ -r $1/$4/output.txt ]; then |
| 23 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | nl > tmp1.txt |
| 24 |
lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
| 25 |
if [ $lncnt -lt 3 ]; then |
| 26 |
if [ $verbose -gt 0 ]; then |
| 27 |
echo Not enough lines of output when searching for "$2" 1>&2 |
| 28 |
fi |
| 29 |
return 99 |
| 30 |
fi |
| 31 |
else |
| 32 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
| 33 |
return 99 |
| 34 |
fi |
| 35 |
if [ $debug -gt 0 ]; then |
| 36 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
| 37 |
fi |
| 38 |
grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
| 39 |
lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
| 40 |
if [ $lncnt -lt 3 ]; then |
| 41 |
if [ $verbose -gt 0 ]; then |
| 42 |
echo Not enough lines of output when searching for "$2" 1>&2 |
| 43 |
fi |
| 44 |
return 99 |
| 45 |
fi |
| 46 |
if [ $debug -gt 0 ]; then |
| 47 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
| 48 |
fi |
| 49 |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
| 50 |
if [ $debug -gt 0 ]; then |
| 51 |
echo testoutput_for_prop: compare_lines 1>&2 |
| 52 |
fi |
| 53 |
compare_lines |
| 54 |
digits_of_similarity=$? |
| 55 |
if [ $digits_of_similarity -eq 99 ]; then |
| 56 |
if [ $verbose -gt 0 ]; then |
| 57 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
| 58 |
fi |
| 59 |
digits_of_similarity=99 |
| 60 |
else |
| 61 |
if [ $verbose -gt 0 ]; then |
| 62 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
| 63 |
fi |
| 64 |
fi |
| 65 |
rm tmp1.txt tmp2.txt tmp3.txt |
| 66 |
|
| 67 |
return $digits_of_similarity |
| 68 |
} |
| 69 |
|
| 70 |
dashnum() |
| 71 |
{ |
| 72 |
# dashnum n1 n2 n3 ... |
| 73 |
# |
| 74 |
# print numbers using %3i format or "--" if number = 99 |
| 75 |
for num in $@ |
| 76 |
do |
| 77 |
if [ $num = 99 ]; then |
| 78 |
printf ' --' |
| 79 |
else |
| 80 |
printf '%3i' $num |
| 81 |
fi |
| 82 |
done |
| 83 |
} |
| 84 |
|
| 85 |
testoutput() |
| 86 |
{ |
| 87 |
# testoutput diretory subdir |
| 88 |
# |
| 89 |
# test output in "directory" |
| 90 |
|
| 91 |
if [ $debug -gt 0 ]; then |
| 92 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
| 93 |
fi |
| 94 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$? |
| 95 |
if [ $debug -gt 0 ]; then |
| 96 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
| 97 |
fi |
| 98 |
|
| 99 |
if [ $longtest -gt 0 ]; then |
| 100 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
| 101 |
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
| 102 |
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$? |
| 103 |
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$? |
| 104 |
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
| 105 |
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
| 106 |
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$? |
| 107 |
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$? |
| 108 |
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
| 109 |
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
| 110 |
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$? |
| 111 |
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$? |
| 112 |
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
| 113 |
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
| 114 |
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$? |
| 115 |
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$? |
| 116 |
else |
| 117 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
| 118 |
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
| 119 |
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
| 120 |
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
| 121 |
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
| 122 |
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
| 123 |
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
| 124 |
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
| 125 |
fi |
| 126 |
|
| 127 |
dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
| 128 |
$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
| 129 |
#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
| 130 |
# $umin $umax $umean $usd $vmin $vmax $vmean $vsd |
| 131 |
} |
| 132 |
|
| 133 |
genmakemodel() |
| 134 |
{ |
| 135 |
# genmakemodel directory |
| 136 |
( cd $1; |
| 137 |
if [ $quick -eq 0 -o ! -r Makefile ]; then |
| 138 |
printf 'genmake ... ' 1>&2 |
| 139 |
find . -type l -exec rm {} \; |
| 140 |
if [ $ieee -eq 0 ]; then |
| 141 |
../../../tools/genmake2 -mods=../code > make.log 2>&1 |
| 142 |
else |
| 143 |
../../../tools/genmake2 -ieee -mods=../code > make.log 2>&1 |
| 144 |
fi |
| 145 |
if [ $? -ne 0 ]; then |
| 146 |
tail make.log |
| 147 |
echo genmakemodel: $genmake failed 1>&2 |
| 148 |
return 1 |
| 149 |
else |
| 150 |
echo succesful 1>&2 |
| 151 |
fi |
| 152 |
fi |
| 153 |
) |
| 154 |
} |
| 155 |
|
| 156 |
makecleancompile() |
| 157 |
{ |
| 158 |
# makecleancompile directory |
| 159 |
( cd $1; |
| 160 |
if [ $force -gt 0 ]; then |
| 161 |
rm -f output.txt |
| 162 |
printf 'make clean ... ' 2>&1 |
| 163 |
make CLEAN >> make.log 2>&1 |
| 164 |
if [ $? -ne 0 ]; then |
| 165 |
tail make.log |
| 166 |
echo makecleancompile: make clean failed 1>&2 |
| 167 |
return 1 |
| 168 |
else |
| 169 |
echo succesful 1>&2 |
| 170 |
fi |
| 171 |
fi |
| 172 |
) |
| 173 |
} |
| 174 |
|
| 175 |
makecleanupafter() |
| 176 |
{ |
| 177 |
# makeupafter directory |
| 178 |
( cd $1; |
| 179 |
if [ $clean -gt 0 ]; then |
| 180 |
rm -f output.txt |
| 181 |
printf 'make clean ... ' 2>&1 |
| 182 |
make CLEAN >> make.log 2>&1 |
| 183 |
if [ $? -ne 0 ]; then |
| 184 |
tail make.log |
| 185 |
echo makeupafter: make clean failed 1>&2 |
| 186 |
return 1 |
| 187 |
else |
| 188 |
echo succesful 1>&2 |
| 189 |
fi |
| 190 |
fi |
| 191 |
) |
| 192 |
} |
| 193 |
|
| 194 |
makedependmodel() |
| 195 |
{ |
| 196 |
# makedependmodel directory |
| 197 |
( cd $1; |
| 198 |
if [ $quick -eq 0 -o ! -r Makefile ]; then |
| 199 |
printf 'make depend ... ' 1>&2 |
| 200 |
make cleanlinks >> make.log 2>&1 |
| 201 |
make depend >> make.log 2>&1 |
| 202 |
if [ $? -ne 0 ]; then |
| 203 |
tail make.log |
| 204 |
echo makemodel: make depend failed 1>&2 |
| 205 |
return 1 |
| 206 |
else |
| 207 |
echo succesful 1>&2 |
| 208 |
fi |
| 209 |
fi |
| 210 |
) |
| 211 |
} |
| 212 |
|
| 213 |
makemodel() |
| 214 |
{ |
| 215 |
# makemodel directory |
| 216 |
( cd $1; |
| 217 |
if [ -r Makefile ]; then |
| 218 |
printf 'make ... ' 1>&2 |
| 219 |
make >> make.log 2>&1 |
| 220 |
if [ $? -ne 0 ]; then |
| 221 |
tail make.log |
| 222 |
echo failed 1>&2 |
| 223 |
return 1 |
| 224 |
else |
| 225 |
echo succesful 1>&2 |
| 226 |
fi |
| 227 |
fi |
| 228 |
) |
| 229 |
} |
| 230 |
|
| 231 |
linkdata() |
| 232 |
{ |
| 233 |
# linkdata flag |
| 234 |
# |
| 235 |
# symbolically link data files to run directory |
| 236 |
if test "x$1" = x1 ; then |
| 237 |
( |
| 238 |
cd $2 |
| 239 |
if test "x$ADM" = x ; then |
| 240 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
| 241 |
for i in $files ; do |
| 242 |
if test ! -d "../input/"$i ; then |
| 243 |
ln -sf "../input/"$i $i |
| 244 |
fi |
| 245 |
done |
| 246 |
else |
| 247 |
files=`( cd ../input ; ls -1 *.bin | grep -v CVS )` |
| 248 |
for i in $files ; do |
| 249 |
if test ! -d "../input/"$i ; then |
| 250 |
ln -sf "../input/"$i $i |
| 251 |
fi |
| 252 |
done |
| 253 |
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
| 254 |
for i in $files ; do |
| 255 |
if test ! -d "../input_ad/"$i ; then |
| 256 |
ln -sf "../input_ad/"$i $i |
| 257 |
fi |
| 258 |
done |
| 259 |
fi |
| 260 |
) |
| 261 |
fi |
| 262 |
} |
| 263 |
|
| 264 |
runmodel() |
| 265 |
{ |
| 266 |
# runmodel directory exe |
| 267 |
# |
| 268 |
# runs the model "exe" in "directory" (exe is relative to directory) |
| 269 |
|
| 270 |
( cd $1 |
| 271 |
if [ -x $2 ]; then |
| 272 |
if [ $quick -eq 0 ]; then |
| 273 |
rm -f output.txt |
| 274 |
fi |
| 275 |
if [ $debug -gt 0 ]; then |
| 276 |
echo -n runmodel: pwd= 1>&2 |
| 277 |
pwd 1>&2 |
| 278 |
fi |
| 279 |
printf 'runmodel: ' 1>&2 |
| 280 |
rm -f *.nc |
| 281 |
make output.txt && return 0 |
| 282 |
return 1 |
| 283 |
fi |
| 284 |
) |
| 285 |
} |
| 286 |
|
| 287 |
copynewresults() |
| 288 |
{ |
| 289 |
# copynewresults directory |
| 290 |
# |
| 291 |
# runs the model "exe" in "directory" (exe is relative to directory) |
| 292 |
|
| 293 |
( cd $1 |
| 294 |
if [ $newresults -eq 1 ]; then |
| 295 |
if [ -r output.txt ]; then |
| 296 |
cp -f output.txt ../results/ |
| 297 |
return 0 |
| 298 |
fi |
| 299 |
fi |
| 300 |
) |
| 301 |
} |
| 302 |
|
| 303 |
createcodelet() |
| 304 |
{ |
| 305 |
# create codelet for comparing model output |
| 306 |
cat > tmp_cmpnum.f <<EOFA |
| 307 |
program cmpnum |
| 308 |
implicit none |
| 309 |
real*8 a,b,diff |
| 310 |
integer linnum,best |
| 311 |
best=-16 |
| 312 |
99 read(*,*,end=70,err=60) linnum,a,b |
| 313 |
diff=0.5*(abs(a)+abs(b)) |
| 314 |
c print *,a,b,diff,abs(a-b)/diff |
| 315 |
if (diff.gt.1.e-12) then |
| 316 |
diff=abs(a-b)/diff |
| 317 |
if (diff.gt.0.) then |
| 318 |
c print *,int(log10(diff)),diff |
| 319 |
linnum=int(log10(diff)) |
| 320 |
best=max(best,linnum) |
| 321 |
endif |
| 322 |
else |
| 323 |
if (best.eq.-16.and.diff.ne.0.) best=-22 |
| 324 |
endif |
| 325 |
goto 99 |
| 326 |
60 stop 'cmpnum: An error occured reading a,b' |
| 327 |
70 print *,-best |
| 328 |
end |
| 329 |
EOFA |
| 330 |
f77 tmp_cmpnum.f |
| 331 |
if [ -x ./a.out ]; then |
| 332 |
return 0 |
| 333 |
else |
| 334 |
echo createcodelet: failed to compile codelet 1>&2 |
| 335 |
exit 1 |
| 336 |
fi |
| 337 |
} |
| 338 |
|
| 339 |
formatresults() |
| 340 |
{ |
| 341 |
# formatresults expt genmake depend make run results* |
| 342 |
|
| 343 |
nm=$1 |
| 344 |
printf '%s %s %s %s' $2 $3 $4 $5 |
| 345 |
shift; shift; shift; shift; shift; |
| 346 |
printf '%3s' $@ |
| 347 |
|
| 348 |
if [ $1 = '--' ]; then |
| 349 |
printf ' N/O ' |
| 350 |
else |
| 351 |
if [ $1 -gt 12 ]; then |
| 352 |
printf ' pass' |
| 353 |
else |
| 354 |
printf ' FAIL' |
| 355 |
fi |
| 356 |
fi |
| 357 |
printf ' %s' $nm |
| 358 |
printf '\n' |
| 359 |
|
| 360 |
} |
| 361 |
|
| 362 |
show_help() |
| 363 |
{ |
| 364 |
cat - << EOF |
| 365 |
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
| 366 |
-help Show this help message |
| 367 |
-quick Skip "genmake" and "make depend" if the Makefile exists |
| 368 |
-newresults Copy the output.txt into results/ |
| 369 |
-quiet Reduce the amount of output |
| 370 |
-verbose Produce copious amounts of output |
| 371 |
-debug Produce even more output which will mean nothing to most |
| 372 |
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
| 373 |
-clean Do "make CLEAN" after compiling and testing. |
| 374 |
-shorttest Don't compare numeric output for mean and s.d. of variables. |
| 375 |
-noieee By default, $0 uses the -ieee option for genmake. This turns it off. |
| 376 |
-cleanup Aggresively removes all model output, executables and object files |
| 377 |
and then exits. Use with care. |
| 378 |
|
| 379 |
Normal usage: |
| 380 |
$0 * Configure, compile, run and analyze in all experiment directories |
| 381 |
EOF |
| 382 |
} |
| 383 |
|
| 384 |
scandirs() |
| 385 |
{ |
| 386 |
if [ $# -eq 0 ]; then |
| 387 |
for arg in * |
| 388 |
do |
| 389 |
test -d $arg/input && echo $arg |
| 390 |
done |
| 391 |
else |
| 392 |
echo $* |
| 393 |
fi |
| 394 |
} |
| 395 |
|
| 396 |
clean_up() |
| 397 |
{ |
| 398 |
# Find all executables, object files, CPP'd source and model output |
| 399 |
# and DELETE it. |
| 400 |
for opt in '-name "mitgcmuv*"' '-name "*.o"' '-name "*.f"' '-name "*.c"' '-name "fort.*"' '-name "make.log"' '-path *results -prune -o -name "*.meta"' '-path *results -prune -o -name "*.data"' '-type l' |
| 401 |
do |
| 402 |
echo Cleaning: find . $opt -exec rm {} \; |
| 403 |
find . $opt -exec rm {} \; |
| 404 |
done |
| 405 |
} |
| 406 |
|
| 407 |
############################################################################### |
| 408 |
############################################################################### |
| 409 |
############################################################################### |
| 410 |
|
| 411 |
# Main function |
| 412 |
|
| 413 |
# Default properties |
| 414 |
debug=0 |
| 415 |
verbose=1 |
| 416 |
quick=0 |
| 417 |
newresults=0 |
| 418 |
force=0 |
| 419 |
clean=0 |
| 420 |
ieee=1 |
| 421 |
longtest=1 |
| 422 |
expts='' |
| 423 |
genmake=genmake |
| 424 |
|
| 425 |
# Process arguments |
| 426 |
for arg in $@ |
| 427 |
do |
| 428 |
case $arg in |
| 429 |
-cleanup) clean_up; exit 0;; |
| 430 |
-quick) quick=1;; |
| 431 |
-newresults) newresults=1;; |
| 432 |
-verbose) verbose=2;; |
| 433 |
-debug) debug=1;; |
| 434 |
-force) force=1;; |
| 435 |
-clean) clean=1;; |
| 436 |
-noieee) ieee=0;; |
| 437 |
-shorttest) longtest=0;; |
| 438 |
-quiet) verbose=0;; |
| 439 |
-help) show_help; exit 0;; |
| 440 |
-*) echo Unrecognized option:$arg; exit 9;; |
| 441 |
*) test -d $arg && expts=`echo $expts $arg`;; |
| 442 |
esac |
| 443 |
done |
| 444 |
|
| 445 |
if [ $force -gt 0 -a $quick -gt 0 ]; then |
| 446 |
echo You specified -quick and -force together which conflict. |
| 447 |
echo Please specify either -quick or -force or neither but not both. |
| 448 |
exit 1 |
| 449 |
fi |
| 450 |
|
| 451 |
#if [ ${#expts} -eq 0 ]; then |
| 452 |
# echo Scanning all directories |
| 453 |
# for arg in * |
| 454 |
# do |
| 455 |
# test -d $arg && expts=`echo $expts $arg` |
| 456 |
# done |
| 457 |
#fi |
| 458 |
expts=`scandirs $expts` |
| 459 |
|
| 460 |
createcodelet |
| 461 |
|
| 462 |
date > summary.txt |
| 463 |
if [ $longtest -gt 0 ]; then |
| 464 |
cat << EOF >> summary.txt |
| 465 |
T S U V |
| 466 |
C D M c m s m s m s m s |
| 467 |
n p a R g m m e . m m e . m m e . m m e . |
| 468 |
f n k u 2 i a a d i a a d i a a d i a a d |
| 469 |
g d e n d n x n . n x n . n x n . n x n . |
| 470 |
|
| 471 |
EOF |
| 472 |
else |
| 473 |
cat << EOF >> summary.txt |
| 474 |
T S U V |
| 475 |
C D M c |
| 476 |
n p a R g m m m m m m m m |
| 477 |
f n k u 2 i a i a i a i a |
| 478 |
g d e n d n x n x n x n x |
| 479 |
|
| 480 |
EOF |
| 481 |
fi |
| 482 |
|
| 483 |
# Now configue, make, run and test in each directory |
| 484 |
for dir in $expts |
| 485 |
do |
| 486 |
if [ -r $dir/results/output.txt ]; then |
| 487 |
echo ------------------------------------------------------------------------------- |
| 488 |
echo |
| 489 |
echo Experiment: $dir |
| 490 |
echo |
| 491 |
unset genmakepass makedepend make run |
| 492 |
if [ $longtest -gt 0 ]; then |
| 493 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
| 494 |
else |
| 495 |
results='-- -- -- -- -- -- -- -- --' |
| 496 |
fi |
| 497 |
if [ -r $dir/build ]; then |
| 498 |
seperatebuilddir=1 |
| 499 |
builddir=build |
| 500 |
rundir=build |
| 501 |
(cd $dir/input; rm -f *.{o,f,c,F,h} work* output.txt Make* make.log; ) |
| 502 |
else |
| 503 |
seperatebuilddir=0 |
| 504 |
builddir=input |
| 505 |
rundir=input |
| 506 |
fi |
| 507 |
genmakemodel $dir/$builddir && genmakepass=Y \ |
| 508 |
&& makecleancompile $dir/$builddir \ |
| 509 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
| 510 |
&& makemodel $dir/$builddir && make=Y \ |
| 511 |
&& linkdata $seperatebuilddir $dir/$rundir \ |
| 512 |
&& runmodel $dir/$builddir mitgcmuv && run=Y \ |
| 513 |
&& results=`testoutput $dir $rundir` \ |
| 514 |
&& copynewresults $dir/$rundir \ |
| 515 |
&& makecleanupafter $dir/$builddir |
| 516 |
echo |
| 517 |
formatresults $dir ${genmakepass:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results |
| 518 |
echo |
| 519 |
formatresults $dir ${genmakepass:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt |
| 520 |
fi |
| 521 |
done |
| 522 |
|
| 523 |
rm tmp_cmpnum.f a.out |
| 524 |
|
| 525 |
echo ------------------------------------------------------------------------------- |
| 526 |
echo |
| 527 |
date >> summary.txt |
| 528 |
cat summary.txt |
Parent Directory
| 
Revision Log
| 
Revision Graph