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Revision 1.87 - (show annotations) (download)
Mon Jul 31 20:48:41 2006 UTC (14 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58n_post, checkpoint58o_post
Changes since 1.86: +15 -20 lines
outputfile is STDOUT.0000 in MPI mode (option -mpi) ;
 "cp STDOUT.0000 output.txt" no longer needed in run-script command

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.86 2006/07/16 04:02:49 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-optfile=|-of=)STRING list of optfiles to use"
19 echo " (-a|-addr) STRING list of email recipients"
20 echo " (DEF=\"edhill@mitgcm.org\")"
21 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
22 echo " (recognized groups: basic, tutorials)"
23 echo " (DEF=\"\" which test all)"
24 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
25 echo " Bourne-compatible \"sh\" shell"
26 echo " (DEF=\"\" for \"bash\")"
27 echo " (-adm|-ad) perform an adjoint run"
28 echo " (-command) STRING command to run"
29 echo " (DEF=\"make output.txt\")"
30 echo " (-m|-make) STRING command to use for \"make\""
31 echo " (DEF=\"make\")"
32 echo " (-odir) STRING used to build output directory name"
33 echo " (DEF=\"hostname\")"
34 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
35 echo " (DEF=\"1 2 3 4 5\")"
36 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
37 echo " (-clean) *ONLY* run \"make CLEAN\""
38 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
39 echo " (-nogenmake|-ng) skip the genmake stage"
40 echo " (-noclean|-nc) skip the \"make clean\" stage"
41 echo " (-nodepend|-nd) skip the \"make depend\" stage"
42 echo " (-deldir|-dd) on success, delete the output directory"
43 echo
44 echo "and where STRING can be a whitespace-delimited list"
45 echo "such as:"
46 echo
47 echo " -t 'exp0 exp2 exp3' "
48 echo " -addr='abc@123.com testing@home.org'"
49 echo
50 echo "provided that the expression is properly quoted within the current"
51 echo "shell (note the use of single quotes to protect white space)."
52 echo
53 exit 1
54 }
55
56 # build the mpack utility
57 build_mpack()
58 {
59 printf "building the mpack utility... "
60 if test ! -x "$MPACKDIR/mpack" ; then
61 if test ! -d $MPACKDIR ; then
62 echo
63 echo "Error: can't find \"$MPACKDIR\""
64 echo " are you sure this program is being run in the correct "
65 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
66 echo
67 HAVE_MPACK=f
68 fi
69 printf "building mpack... "
70 if test "x$CC" = x ; then
71 export CC=cc
72 fi
73 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
74 RETVAL=$?
75 if test "x$RETVAL" != x0 ; then
76 echo
77 echo "Error building the mpack tools at: $MPACK_DIR"
78 echo
79 HAVE_MPACK=f
80 else
81 rm -f tr_build_mpack.out
82 HAVE_MPACK=t
83 fi
84 else
85 HAVE_MPACK=t
86 fi
87 echo "OK"
88 }
89
90 testoutput_for_prop()
91 {
92 # testoutput_for_prop dir s1 label subdir extension
93 #
94 # compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt
95 # using search strings s1 and text label
96
97 if [ $debug -gt 0 ]; then
98 echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2
99 fi
100 if [ -r $1/$4/$OUTPUTFILE ]; then
101 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
102 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
103 if [ $lncntA -lt 3 ]; then
104 if [ $verbose -gt 0 ]; then
105 echo Not enough lines of output when searching for "$2" 1>&2
106 fi
107 return 99
108 fi
109 else
110 echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2
111 return 99
112 fi
113 if [ $debug -gt 0 ]; then
114 echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2
115 fi
116 grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt
117 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
118 if [ $lncntB -lt 3 ]; then
119 if [ $verbose -gt 0 ]; then
120 echo Not enough lines of output when searching for "$2" 1>&2
121 fi
122 return 99
123 fi
124 if [ $lncntA -ne $lncntB ]; then
125 if [ $verbose -gt 0 ]; then
126 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
127 fi
128 return 99
129 fi
130 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
131 if [ $has_nan -gt 0 ] ; then
132 echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2
133 return 99
134 fi
135 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
136 if [ $has_inf -gt 0 ] ; then
137 echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2
138 return 99
139 fi
140 if [ $debug -gt 0 ]; then
141 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
142 fi
143 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
144 if [ $debug -gt 0 ]; then
145 echo testoutput_for_prop: compare_lines 1>&2
146 fi
147 if [ $verbose -gt 1 ]; then
148 cat tmp3.txt 1>&2
149 fi
150 echo "-1" >> tmp3.txt
151 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
152 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
153 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
154 if [ $digits_of_similarity -eq 99 ]; then
155 if [ $verbose -gt 0 ]; then
156 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
157 fi
158 digits_of_similarity=99
159 else
160 if [ $verbose -gt 0 ]; then
161 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
162 fi
163 fi
164 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
165
166 return $digits_of_similarity
167 }
168
169 dashnum()
170 {
171 # dashnum n1 n2 n3 ...
172 #
173 # print numbers using %3i format or "--" if number = 99
174
175 for num in $@ ; do
176 if [ $num = 99 ]; then
177 printf ' --'
178 else
179 printf '%3i' $num
180 fi
181 done
182 }
183
184 testoutput_ad()
185 {
186 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
187 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt
188 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
189 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt
190 join t05.txt t15.txt > t5.txt
191 join t06.txt t16.txt > t6.txt
192 echo "-1" >> t5.txt
193 echo "-1" >> t6.txt
194 digits_5=`./tmp_cmpnum < t5.txt`
195 digits_6=`./tmp_cmpnum < t6.txt`
196 dashnum $digits_5 $digits_6
197 rm -f t[01][56].txt t[56].txt
198 }
199
200 check_for_add_mon_output()
201 {
202 # Check for additional types of monitor output
203 if test "x$1" = x ; then
204 return
205 fi
206
207 for ii in $PTRACERS_NUM ; do
208 eval "HAVE_PTR0"$ii"=f"
209 done
210
211 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
212 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
213 for ii in $PTRACERS_NUM ; do
214 for jj in $ptr_add ; do
215 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
216 tst=`grep $name $1 | wc -l | awk '{print $1}'`
217 if test ! "x$tst" = x0 ; then
218 eval "HAVE_PTR0"$ii"=t"
219 fi
220 done
221 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
222 done
223 }
224
225 testoutput()
226 {
227 # testoutput directory subdir extension
228 #
229 # test output in "directory"
230 if test "x$ADM" = x ; then
231 if [ $debug -gt 0 ]; then
232 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
233 fi
234 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
235 if [ $debug -gt 0 ]; then
236 echo testoutput: cg2dres=$cg2dres 1>&2
237 fi
238 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
239 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
240 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
241 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
242 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
243 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
244 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
245 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
246 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
247 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
248 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
249 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
250 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
251 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
252 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
253 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
254
255 # This is for PTRACERS
256 for ii in $PTRACERS_NUM ; do
257 eval `echo "p0"$ii"_min=99"`
258 eval `echo "p0"$ii"_max=99"`
259 eval `echo "p0"$ii"_mean=99"`
260 eval `echo "p0"$ii"_sd=99"`
261 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
262 #echo 'tst = '$tst
263 if test "x$tst" = xt ; then
264 a="trcstat_ptracer0"
265 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
266 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
267 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
268 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
269 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
270 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
271 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
272 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
273 fi
274 done
275
276 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
277 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
278 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
279 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
280 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
281 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
282 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
283
284 eval "dashnum $allargs"
285
286 else
287 testoutput_ad $1 $2 "precision_grdchk_result"
288 fi
289 }
290
291 genmakemodel()
292 {
293 # genmakemodel directory
294 if test "x$NOGENMAKE" = xt ; then
295 echo "genmake skipped!"
296 else
297 if test "x$BASH" = x ; then
298 GENMAKE2="../../../tools/genmake2"
299 else
300 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
301 fi
302 (
303 cd $1;
304 command="$GENMAKE2 -ds -m $MAKE"
305 if test "x$ADM" = x ; then
306 command="$command --mods=../code"
307 else
308 command="$command --mods=../code_ad"
309 fi
310 if test "x$OPTFILE" != xNONE ; then
311 command="$command --optfile=$OPTFILE"
312 fi
313 if test "x$IEEE" != x ; then
314 command="$command -ieee"
315 fi
316 if test "x$MPI" = xt ; then
317 command="$command -mpi"
318 fi
319 printf 'genmake ... ' 1>&2
320 $command > make.log 2>&1
321 RETVAL=$?
322 # Reduce the size of the testing emails!
323 head -100 Makefile > $CDIR/Makefile_head
324 if test "x$RETVAL" != x0 ; then
325 tail make.log
326 echo "genmakemodel: genmake failed" 1>&2
327 cp genmake_* make.log $CDIR
328 return 1
329 else
330 echo "successful" 1>&2
331 fi
332 )
333 fi
334 }
335
336 makeclean()
337 {
338 # makeclean directory
339 if test "x$NOCLEAN" = xt ; then
340 echo "make Clean skipped!"
341 else
342 (
343 cd $1;
344 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
345 if test -r Makefile ; then
346 printf 'clean build-dir: make Clean ... ' 2>&1
347 $MAKE Clean >> make.log 2>&1
348 RETVAL=$?
349 if test "x$RETVAL" != x0 ; then
350 tail make.log
351 echo "makeclean: \"make Clean\" failed" 1>&2
352 cp make.log $CDIR"/make.log"
353 return 1
354 fi
355 fi
356 echo successful 1>&2
357 exit 0
358 )
359 fi
360 }
361
362 run_clean()
363 {
364 # run_clean directory
365 if test "x$NOCLEAN" = xt ; then
366 echo "run_clean skipped!"
367 else
368 (
369 cd $1;
370 printf 'clean run-dir ... ' 2>&1
371 # part of what is done after "make clean" when doing "make CLEAN"
372 find . -name "*.meta" -exec rm {} \;
373 find . -name "*.data" -exec rm {} \;
374 find . -name "fort.*" -exec rm {} \;
375 find . -type l -exec rm {} \;
376 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
377 rm -rf mnc_test_*
378 echo successful 1>&2
379 exit 0
380 )
381 fi
382 }
383
384 makedependmodel()
385 {
386 # makedependmodel directory
387 if test "x$NODEPEND" = xt ; then
388 echo "make depend skipped!"
389 else
390 (
391 cd $1;
392 printf 'make depend ... ' 1>&2
393 $MAKE depend >> make.log 2>&1
394 RETVAL=$?
395 if test "x$RETVAL" != x0 ; then
396 tail make.log
397 echo "makedependmodel: make depend failed" 1>&2
398 cp make.log $CDIR"/make.log"
399 return 1
400 else
401 echo successful 1>&2
402 fi
403 )
404 fi
405 }
406
407 makemodel()
408 {
409 # makemodel directory
410 (
411 cd $1;
412 if test -r Makefile ; then
413 printf 'make ... ' 1>&2
414 if test "x$ADM" = x ; then
415 if test "x$JOBS" = x ; then
416 $MAKE >> make.log 2>&1
417 else
418 $MAKE -j $JOBS >> make.log 2>&1
419 fi
420 else
421 $MAKE adall >> make.log 2>&1
422 fi
423 RETVAL=$?
424 if test "x$RETVAL" != x0 ; then
425 tail make.log
426 echo failed 1>&2
427 cp make.log $CDIR"/make.log"
428 return 1
429 else
430 echo successful 1>&2
431 fi
432 fi
433 )
434 }
435
436 symlink_mpifiles()
437 {
438 # Put special links so that MPI specific files are used
439 # This MUST be invoked between makeclean and makelinks because
440 # the Makefile will link to non-mpi files by default
441
442 dir=$1
443 code_dir=$2
444 BUILD_DIR=$dir/$3
445 CODE_DIR=$dir/$code_dir
446
447 # These are files that should replace their counter-part when using -mpi
448 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
449
450 # Is this an MPI run?
451 if test "x$MPI" = xt ; then
452 # YES: We symbolically link these files to the build
453 # dir so long as there is no real file in place
454 for ii in $MPI_FILES ; do
455 i=`echo $ii | sed 's:^\./::'`
456 name=`echo $i | sed 's:_mpi::' `
457 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
458 RETVAL=$?
459 if test "x$RETVAL" != x0 ; then
460 if ! test -f $BUILD_DIR/$i ; then
461 #echo Linking $name to $i
462 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
463 fi
464 fi
465 done
466 else
467 # NO: We undo any _mpi symbolically linked files
468 for ii in $MPI_FILES ; do
469 i=`echo $ii | sed 's:^\./::'`
470 name=`echo $i | sed 's:_mpi::' `
471 if test -L $BUILD_DIR/$name ; then
472 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
473 RETVAL=$?
474 if test "x$RETVAL" = x0 ; then
475 #echo Un-linking $name from $linktarg
476 rm -f $BUILD_DIR/$name
477 fi
478 fi
479 done
480 fi
481
482 }
483
484 linkdata()
485 {
486 # linkdata run_dir input_dir_1 input_dir_2 ...
487 #
488 # symbolically link data files to run directory
489 if test -d $1 ; then
490 (
491 cd $1 ; shift
492 if test -r "../"$1"/eedata.mth" ; then
493 # found eedata.mth in 1rst input dir and it is readable
494 if test "x$MULTI_THREAD" = "xt" ; then
495 # multi-threaded test: remove symbolic link & link eedata.mth
496 if test -h eedata ; then rm -f eedata ; fi
497 if test ! -r eedata ; then
498 ln -sf "../"$1"/eedata.mth" eedata ;
499 printf 'eedata.mth ' 1>&2
500 fi
501 else
502 # not multi-threaded test: remove eedata symbolic link
503 if test -h eedata ; then rm -f eedata ; fi
504 fi
505 fi
506 for ldir in $* ; do
507 if test -d "../"$ldir ; then
508 printf 'ldir='${ldir} 1>&2
509 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
510 for i in $files ; do
511 if test ! -d "../"$ldir/$i ; then
512 if test ! -r $i ; then
513 printf ' '$i 1>&2
514 ln -sf "../"$ldir"/"$i $i
515 fi
516 fi
517 done
518 if test -x "../"$ldir"/"prepare_run ; then
519 "../"$ldir"/"prepare_run
520 fi
521 printf ' ; ' 1>&2
522 fi
523 done
524 )
525 fi
526 }
527
528 runmodel()
529 {
530 # runmodel directory
531 #
532 # runs "$COMMAND in "directory"
533 # (where "$COMMAND" is relative to "directory")
534 (
535 cd $1
536 printf 'runmodel in %s ...' $1 1>&2
537 # make output.txt
538 echo
539 rm -f run.log
540 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
541 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log
542 ln -sf "../"$builddir"/"$EXECUTABLE .
543 else
544 touch run.log
545 fi
546 if test ! -x $EXECUTABLE ; then
547 echo " no executable:" $EXECUTABLE >> run.log
548 RETVAL=8
549 else
550 if test $OUTPUTFILE -ot $EXECUTABLE ; then
551 ( eval $COMMAND ) >> run.log 2>&1
552 RETVAL=$?
553 else
554 echo " $OUTPUTFILE is up to date " >> run.log 2>&1
555 RETVAL=0
556 fi
557 fi
558 # echo "COMMAND='$COMMAND'"
559 # echo "pwd='"`pwd`"'"
560 if test "x$RETVAL" = x0 ; then
561 tail run.log
562 echo successful 1>&2
563 # === Reduce the size of the testing emails!
564 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
565 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
566 return 0
567 else
568 tail run.log
569 echo failed 1>&2
570 cp run.log $CDIR"/run.log"
571 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
572 return 1
573 fi
574 )
575 }
576
577 createcodelet()
578 {
579 # create codelet for comparing model output
580
581 printf "creating the comparison code... "
582 cat > tmp_cmpnum.c <<EOF
583 #include <stdio.h>
584 #include <math.h>
585 int main( int argc, char** argv ) {
586 int linnum,best,lncnt;
587 double a,b,abave,relerr;
588 best = -22;
589 lncnt = 0;
590 while( 1 & (lncnt+=1) < 999 ) {
591 scanf("%d", &linnum);
592 if (linnum == -1) break;
593 scanf("%lf", &a); scanf("%lf", &b);
594 abave = 0.5*(fabs(a)+fabs(b));
595 if (abave > 0.0) {
596 relerr=fabs(a-b)/abave;
597 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
598 else { linnum = -16 ; }
599 best = (best > linnum) ? best : linnum;
600 }
601 }
602 if (lncnt == 999) best=-29;
603 printf("%d\n", -best);
604 return 0;
605 }
606 EOF
607 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
608
609 if [ -x ./tmp_cmpnum ]; then
610 echo "OK"
611 return 0
612 else
613 echo
614 echo "ERROR: failed to compile comparison code -- please specify"
615 echo " a C compiler using the CC environment variable."
616 exit 1
617 fi
618 }
619
620 formatresults()
621 {
622 # formatresults expt genmake depend make run results*
623
624 nm=$1
625 printf '%s %s %s %s' $2 $3 $4 $5
626 shift; shift; shift; shift; shift;
627 printf '%3s' $@
628
629 if [ $1 = '--' ]; then
630 printf ' N/O '
631 else
632 if [ $1 -gt 12 ]; then
633 printf ' pass'
634 else
635 printf ' FAIL'
636 fi
637 fi
638 printf ' %s' $nm
639 printf '\n'
640
641 }
642
643 show_help()
644 {
645 cat - << EOF
646 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
647
648 -help|-h Show this help message
649 -quiet Reduce the amount of output
650 -verbose Produce copious amounts of output
651 -debug Produce even more output which will mean nothing to most
652 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
653 -clean Do "make CLEAN" after compiling and testing.
654 -cleanup Aggresively removes all model output, executables and object files
655 and then exits. Use with care.
656
657 Normal usage:
658 $0 * Configure, compile, run and analyze in all experiment directories
659 EOF
660 }
661
662 scandirs()
663 {
664 if [ $# -eq 1 ]; then
665 for arg in * ; do
666 test -d $arg/$1 && echo $arg
667 done
668 else
669 echo $*
670 fi
671 }
672
673
674 ###############################################################################
675
676
677 # Default properties
678 debug=0
679 verbose=1
680 clean=0
681 expts=''
682 # ieee=1
683
684 IEEE=true
685 if test "x$MITGCM_IEEE" != x ; then
686 IEEE=$MITGCM_IEEE
687 fi
688
689
690 CLEANUP=f
691 QUICK=f
692 NOGENMAKE=f
693 NOCLEAN=f
694 NODEPEND=f
695 POSTCLEAN=f
696
697 BASH=
698 OPTFILE=NONE
699 ADDRESSES=
700 TESTDIRS=
701 MPACKDIR="../tools/mpack-1.6"
702 HAVE_MPACK=
703 MPACK="$MPACKDIR/mpack"
704 COMMAND=
705 if test "x$MAKE" = x ; then
706 MAKE=make
707 fi
708 if test "x$CC" = x ; then
709 CC=cc
710 fi
711 JOBS=
712 MPI=f
713 MULTI_THREAD=f
714 OUTDIR=
715 DELDIR=
716
717 ADM=
718
719 # Additional monitor types
720 PTRACERS_NUM="1 2 3 4 5"
721
722 printf "parsing options... "
723
724 ac_prev=
725 for ac_option ; do
726
727 # If the previous option needs an argument, assign it.
728 if test -n "$ac_prev"; then
729 eval "$ac_prev=\$ac_option"
730 ac_prev=
731 continue
732 fi
733
734 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
735
736 case $ac_option in
737
738 -help | --help | -h | --h)
739 usage ;;
740
741 -optfile | --optfile | -of | --of)
742 ac_prev=OPTFILE ;;
743 -optfile=* | --optfile=* | -of=* | --of=*)
744 OPTFILE=$ac_optarg ;;
745
746 -addr | --addr | -a | --a)
747 ac_prev=ADDRESSES ;;
748 -addr=* | --addr=*)
749 ADDRESSES=$ac_optarg ;;
750
751 -tdir | --tdir | -t | --t)
752 ac_prev=TESTDIRS ;;
753 -tdir=* | --tdir=*)
754 TESTDIRS=$ac_optarg ;;
755
756 -bash | --bash | -b | --b)
757 ac_prev=BASH ;;
758 -bash=* | --bash=*)
759 BASH=$ac_optarg ;;
760
761 -command | --command | -c | --c)
762 ac_prev=COMMAND ;;
763 -command=* | --command=*)
764 COMMAND=$ac_optarg ;;
765
766 -make | --make | -m | --m)
767 ac_prev=MAKE ;;
768 -make=* | --make=*)
769 MAKE=$ac_optarg ;;
770
771 -odir | --odir)
772 ac_prev=OUTDIR ;;
773 -odir=* | --odir=*)
774 OUTDIR=$ac_optarg ;;
775
776 -ptracers | --ptracers | -ptr | --ptr)
777 ac_prev=PTRACERS_NUM ;;
778 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
779 PTRACERS_NUM=$ac_optarg ;;
780
781 -j) ac_prev=JOBS ;;
782 -j=*) JOBS=$ac_optarg ;;
783
784 -clean | --clean)
785 CLEANUP=t ; DELDIR=t ;;
786
787 -quick | --quick | -q | --q)
788 QUICK=t ;;
789 -nogenmake | --nogenmake | -ng | --ng)
790 NOGENMAKE=t ;;
791 -noclean | --noclean | -nc | --nc)
792 NOCLEAN=t ;;
793 -nodepend | --nodepend | -nd | --nd)
794 NODEPEND=t ;;
795
796 -postclean | --postclean | -pc | --pc)
797 POSTCLEAN=t ;;
798
799 -mpi) MPI=t ;;
800
801 -mth) MULTI_THREAD=t ;;
802
803 -adm | -ad) ADM=t ;;
804
805 -ieee) IEEE=true ;;
806 -noieee) IEEE= ;;
807
808 -verbose) verbose=2 ;;
809 -debug) debug=1 ;;
810 -quiet) verbose=0 ;;
811
812 -deldir | -dd) DELDIR=t ;;
813
814 -*)
815 echo "Error: unrecognized option: "$ac_option
816 usage
817 ;;
818
819 *)
820 echo "Error: unrecognized argument: "$ac_option
821 usage
822 ;;
823
824 esac
825
826 done
827
828 if test "x$QUICK" = xt ; then
829 NOGENMAKE=t
830 NOCLEAN=t
831 NODEPEND=t
832 fi
833
834 if test "x$TESTDIRS" = x ; then
835 if test "x$ADM" = xt ; then
836 TESTDIRS=`scandirs results_ad`
837 else
838 TESTDIRS=`scandirs results`
839 fi
840 else
841 #- expand group of experiments:
842 LIST=" "
843 for xx in $TESTDIRS
844 do
845 case $xx in
846 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
847 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
848 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
849 ;;
850 'tutorials')
851 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
852 *) LIST=${LIST}" "$xx ;;
853 esac
854 done
855 #echo 'LIST='${LIST}'<'
856 #- remove duplicate and non-directory:
857 TESTDIRS=" "
858 for xx in $LIST
859 do
860 if test -d $xx ; then
861 yy=`echo $TESTDIRS | grep -c $xx`
862 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
863 else
864 echo " -- skip \"$xx\" : not a directory !"
865 fi
866 done
867 fi
868 #echo 'TESTDIRS='${TESTDIRS}'<'
869
870 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
871 OPTFILE=$MITGCM_OF
872 fi
873
874 if test "x$ADM" = xt ; then
875 EXECUTABLE="mitgcmuv_ad"
876 OUTPUTFILE="output_adm.txt"
877 else
878 EXECUTABLE="mitgcmuv"
879 OUTPUTFILE="output.txt"
880 fi
881
882 if test "x$COMMAND" = x ; then
883 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
884 fi
885 if test "x$MPI" = xt ; then
886 OUTPUTFILE="STDOUT.0000"
887 fi
888
889 #echo "OK"
890 echo "OK (COMMAND= $COMMAND )"
891
892 # create the FORTRAN comparison code
893 createcodelet
894
895 # build the mpack utility
896 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
897 echo "skipping mpack build"
898 else
899 build_mpack
900 fi
901
902 # Create a uniquely named directory to store results
903 MACH=`hostname`
904 UNAMEA=`uname -a`
905 DATE=`date +%Y%m%d`
906 BASE="tr_"$MACH"_"$DATE"_"
907 if test "x$OUTDIR" != x ; then
908 BASE="tr_"$OUTDIR"_"$DATE"_"
909 fi
910 DNUM=0
911 DRESULTS="$BASE$DNUM"
912 while test -e $DRESULTS ; do
913 DNUM=$(( $DNUM + 1 ))
914 DRESULTS="$BASE$DNUM"
915 done
916 mkdir $DRESULTS
917 RETVAL=$?
918 if test "x$RETVAL" != x0 ; then
919 echo "ERROR: Can't create results directory \"./$DRESULTS\""
920 exit 1
921 fi
922 SUMMARY="$DRESULTS/summary.txt"
923 printf "Start time: " >> $SUMMARY
924 start_date=`date`
925 echo $start_date > $SUMMARY
926
927 of_path=
928 if test "x$OPTFILE" != xNONE ; then
929 if test -r $OPTFILE ; then
930 # get the path
931 path=${OPTFILE%/*}
932 if test "x$path" = x ; then
933 of_path=`pwd`
934 else
935 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
936 fi
937 file=${OPTFILE##*/}
938 OPTFILE=$of_path/$file
939 cp $OPTFILE $DRESULTS
940 echo >> $SUMMARY
941 echo " OPTFILE=$OPTFILE" >> $SUMMARY
942 else
943 echo | tee $SUMMARY
944 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
945 exit 1
946 fi
947 else
948 echo >> $SUMMARY
949 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
950 echo " so the genmake default will be used." >> $SUMMARY
951 fi
952 echo
953 echo >> $SUMMARY
954 if test "x$ADM" = x ; then
955 line_0=" ----T----- ----S----- ----U----- ----V-----"
956 line_1="G D M c m s m s m s m s"
957 line_2="E p a R g m m e . m m e . m m e . m m e ."
958 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
959 line_4="2 d e n d n x n . n x n . n x n . n x n ."
960 for ii in $PTRACERS_NUM ; do
961 # tst=`eval 'echo $HAVE_PTR0'$ii`
962 # if test "x$tst" = xt ; then
963 line_0="$line_0 --PTR 0"$ii"--"
964 line_1="$line_1 m s"
965 line_2="$line_2 m m e ."
966 line_3="$line_3 i a a d"
967 line_4="$line_4 n x n ."
968 # fi
969 done
970 echo "$line_0" | tee -a $SUMMARY
971 echo "$line_1" | tee -a $SUMMARY
972 echo "$line_2" | tee -a $SUMMARY
973 echo "$line_3" | tee -a $SUMMARY
974 echo "$line_4" | tee -a $SUMMARY
975 echo " " | tee -a $SUMMARY
976 else
977 echo "ADJOINT=true" >> $SUMMARY
978 echo >> $SUMMARY
979 cat << EOF | tee -a $SUMMARY
980 G D M C G
981 E p a R o r
982 N n k u s a
983 2 d e n t d
984
985 EOF
986 fi
987
988 # ...and each test directory...
989 for dir in $TESTDIRS ; do
990
991 # Cleanup only!
992 if test "x$CLEANUP" = xt ; then
993 if test -r $dir/build/Makefile ; then
994 echo ' ------ clean dir:' $dir/build
995 ( cd $dir/build ; make CLEAN )
996 fi
997 if test -d $dir/run/CVS ; then
998 echo ' ------ clean dir:' $dir/run
999 run_clean $dir/run
1000 fi
1001 (
1002 cd $dir
1003 rm -rf tr_run.*
1004 )
1005 continue
1006 fi
1007
1008 # Verify that the testdir exists and contains previous
1009 # results in the correct location--or skip this directory!
1010 fout=
1011 if test "x$ADM" = x ; then
1012 fout=$dir"/results/output.txt"
1013 else
1014 fout=$dir"/results_ad/output_adm.txt"
1015 fi
1016 if test ! -r $fout ; then
1017 echo "can't read \"$fout\" -- skipping $dir"
1018 continue
1019 fi
1020 if test "x$ADM" = x ; then
1021 check_for_add_mon_output $fout
1022 fi
1023
1024 # Check for additional types of monitor output
1025
1026 builddir="build"
1027 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1028 rundir="run"
1029 #rundir=$builddir
1030 if test ! -d $dir/$rundir ; then
1031 rundir=$builddir
1032 fi
1033
1034 if test "x$ADM" = x ; then
1035 code_dir=code
1036 CODE_DIR=$dir/code
1037 input_dirs='input'
1038 else
1039 code_dir=code_ad
1040 CODE_DIR=$dir/code_ad
1041 input_dirs='input_ad input'
1042 fi
1043 BUILD_DIR=$dir/$builddir
1044
1045 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1046 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1047 continue
1048 fi
1049 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1050 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1051 continue
1052 fi
1053
1054 # Check whether there are "extra runs" for this testdir
1055 extra_runs=
1056 if test "x$ADM" = x ; then
1057 ex_run_dirs=`( cd $dir ; echo input.* )`
1058 #echo "ex_run_dirs='$ex_run_dirs'"
1059 for exd in $ex_run_dirs ; do
1060 name=`echo $exd | sed -e 's/input.//g'`
1061 outf="$dir/results/output.$name.txt"
1062 if test -f $outf -a -r $outf ; then
1063 if test "x$MULTI_THREAD" = "xt" ; then
1064 if test -r $dir"/"$exd"/eedata.mth" ; then
1065 extra_runs="$extra_runs $name"
1066 #else echo $dir"/"$exd"/eedata.mth: not found"
1067 fi
1068 else
1069 extra_runs="$extra_runs $name"
1070 fi
1071 fi
1072 done
1073 fi
1074
1075 echo "-------------------------------------------------------------------------------"
1076 echo
1077 if test "x$extra_runs" = "x" ; then
1078 echo "Experiment: $dir"
1079 else
1080 echo "Experiment: $dir ; extra_runs=$extra_runs"
1081 fi
1082 echo
1083 unset genmake makedepend make run
1084 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1085
1086 # Create an output dir for each OPTFILE/tdir combination
1087 rel_CDIR=$DRESULTS"/"$dir
1088 mkdir $rel_CDIR
1089 CDIR=`pwd`"/$rel_CDIR"
1090
1091 if test "x$CLEANUP" = xt ; then
1092 echo '====>>> this is to check that we never go through this part <<< ==='
1093 makeclean $dir/$builddir \
1094 && run_clean $dir/$rundir
1095 else
1096 genmakemodel $dir/$builddir && genmake=Y \
1097 && makeclean $dir/$builddir \
1098 && run_clean $dir/$rundir \
1099 && symlink_mpifiles $dir $code_dir $builddir \
1100 && makedependmodel $dir/$builddir && makedepend=Y \
1101 && makemodel $dir/$builddir && make=Y \
1102 && linkdata $dir/$rundir $input_dirs \
1103 && runmodel $dir/$rundir && run=Y \
1104 && results=`testoutput $dir $rundir "txt"`
1105 fi
1106
1107 echo
1108 if test "x$ADM" = x ; then
1109 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1110 echo
1111 echo "$fres" >> $SUMMARY
1112 echo "fresults='$fres'" > $CDIR"/summary.txt"
1113 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1114 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1115 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1116 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1117
1118 for ex in $extra_runs ; do
1119 unset run
1120 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1121 # Create an output dir for each OPTFILE/tdir.ex combination
1122 rel_CDIR=$DRESULTS"/"$dir"."$ex
1123 mkdir $rel_CDIR
1124 CDIR=`pwd`"/$rel_CDIR"
1125 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1126 run_clean $dir/tr_run.$ex
1127 linkdata $dir/tr_run.$ex input.$ex input
1128 runmodel $dir/tr_run.$ex && run=Y \
1129 && results=`testoutput $dir tr_run.$ex ${ex}".txt"`
1130 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1131 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1132 fres="$fres.$ex"
1133 echo
1134 echo "$fres" >> $SUMMARY
1135 echo "fresults='$fres'" > $CDIR"/summary.txt"
1136 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1137 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1138 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1139 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1140 if test "x$POSTCLEAN" = xt ; then
1141 run_clean $dir/tr_run.$ex
1142 fi
1143 done
1144 else
1145 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1146 fres=$fres"$results $dir"
1147 echo
1148 echo "$fres" >> $SUMMARY
1149 echo "fresults='$fres'" > $CDIR"/summary.txt"
1150 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1151 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1152 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1153 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1154 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1155 >> $CDIR"/summary.txt"
1156 fi
1157
1158 #postclean $dir/$builddir
1159 if test "x$POSTCLEAN" = xt ; then
1160 makeclean $dir/$builddir \
1161 && run_clean $dir/$rundir
1162 fi
1163
1164 echo "-------------------------------------------------------------------------------"
1165
1166 done
1167
1168 printf "Start time: " >> $SUMMARY
1169 echo $start_date >> $SUMMARY
1170 printf "End time: " >> $SUMMARY
1171 date >> $SUMMARY
1172
1173 # If addresses were supplied and mpack built successfully, then try
1174 # to send email using mpack.
1175 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1176 echo "No results email was sent."
1177 else
1178 if test "x$HAVE_MPACK" = xt ; then
1179 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1180 && gzip $DRESULTS".tar" \
1181 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1182 RETVAL=$?
1183 if test "x$RETVAL" != x0 ; then
1184 echo
1185 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1186 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1187 echo " summary of results from the directory \"$DRESULTS\"."
1188 echo
1189 else
1190 echo
1191 echo "An email containing results was sent to the following addresses:"
1192 echo " \"$ADDRESSES\""
1193 echo
1194 fi
1195 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1196 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1197 fi
1198 fi
1199
1200 # rm -f tmp_cmpnum.f a.out
1201 rm -f tmp_cmpnum.c tmp_cmpnum
1202
1203 if test "x$CLEANUP" != xt ; then
1204 cat $SUMMARY | sed 's/ -- -- -- --//g'
1205 if test -e tr_out.txt ; then
1206 mv tr_out.txt tr_out.txt.old
1207 fi
1208 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1209 fi
1210
1211 if test "x$DELDIR" = xt ; then
1212 rm -rf $DRESULTS
1213 fi

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