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Revision 1.202 - (show annotations) (download)
Tue Mar 3 15:55:51 2015 UTC (6 years, 4 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint65k
Changes since 1.201: +15 -8 lines
replace "cat -n" by "nl" (two occurrences)
replace "grep -A3" by an "sed" command (one occurrence)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.201 2015/02/23 23:05:57 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " ---- type of test : ----"
15 echo " (-tlm) perform a Tangent Linear run"
16 echo " (-adm|-ad) perform an adjoint run"
17 echo " (-oad) perform an OpenAD adjoint run"
18 echo " (-mth) run multi-threaded (using eedata.mth)"
19 echo " (-mpi) use MPI to compile and run on 2 processors"
20 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
21 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
22 echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)"
23 echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'"
24 echo " ---- testing options : ----"
25 echo " (-optfile|-of) STRING list of optfiles to use"
26 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
27 echo " DEF=off => use IEEE numerics option (if available)"
28 echo " (-devel) use optfile developement flags (if available)"
29 echo " (-gsl) compile with \"-gsl\" flag"
30 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
31 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
32 echo " (recognized groups: basic, tutorials)"
33 echo " (DEF=\"\" which test all)"
34 echo " (if list= 'start_from THIS_EXP' then"
35 echo " test THIS_EXP + all the following)"
36 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
37 echo " (DEF=\"\" which test all)"
38 echo " (-ts) provide timing information per timestep"
39 echo " (-papis) provide MFlop/s per timestep using PAPI"
40 echo " (-pcls) provide MFlop/s per timestep using PCL"
41 echo " ---- system options : ----"
42 echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
43 echo " (DEF=\"\" for \"bash\")"
44 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
45 echo " (-ncad) used genmake2 option \"-nocat4ad\" (-ncad)"
46 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
47 echo " (-make|-m) STRING command to use for \"make\""
48 echo " (DEF=\"make\")"
49 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
50 echo " ---- output options : ----"
51 echo " (-match) NUMBER Matching Criteria (number of digits)"
52 echo " (DEF=\"$MATCH_CRIT\")"
53 echo " (-odir) STRING used to build output directory name"
54 echo " (DEF=\"hostname\")"
55 echo " (-addr|-a) STRING list of email recipients"
56 echo " (DEF=\"\" no email is sent)"
57 echo " (-send) STRING sending command (instead of using mpack)"
58 echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
59 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
60 echo " (DEF=\"../tools/mpack-1.6\")"
61 echo " -- do only some parts: --"
62 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
63 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
64 echo " (-obj) only produces objects (=norun & no executable)"
65 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
66 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
67 echo " (-nogenmake|-ng) skip the genmake stage"
68 echo " (-noclean|-nc) skip the \"make clean\" stage"
69 echo " (-nodepend|-nd) skip the \"make depend\" stage"
70 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
71 echo " (-deloutp|-do) delete output files after successful run"
72 echo " (-deldir|-dd) on success, delete the output directory"
73 echo
74 echo "and where STRING can be a whitespace-delimited list"
75 echo "such as:"
76 echo
77 echo " -t 'exp0 exp2 exp3' "
78 echo " -addr='abc@123.com testing@home.org'"
79 echo
80 echo "provided that the expression is properly quoted within the current"
81 echo "shell (note the use of single quotes to protect white space)."
82 echo
83 exit 1
84 }
85
86 # build the mpack utility
87 build_mpack()
88 {
89 printf "building the mpack utility... "
90 MPACK="$MPACKDIR/mpack"
91 if test ! -x $MPACK ; then
92 if test ! -d $MPACKDIR ; then
93 echo
94 echo "Error: can't find \"$MPACKDIR\""
95 echo " are you sure this program is being run in the correct "
96 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
97 echo
98 HAVE_MPACK=f
99 fi
100 if test "x$CC" = x ; then
101 export CC=cc
102 fi
103 printf "building mpack (using CC=$CC)... "
104 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
105 RETVAL=$?
106 if test "x$RETVAL" != x0 ; then
107 echo
108 echo "Error building the mpack tools at: $MPACK_DIR"
109 echo
110 HAVE_MPACK=f
111 else
112 rm -f tr_build_mpack.out
113 HAVE_MPACK=t
114 echo "done"
115 fi
116 else
117 HAVE_MPACK=t
118 echo "already exist"
119 fi
120 }
121
122 testoutput_var()
123 {
124 # testoutput_var dir s1 label subdir reference_output
125 #
126 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
127 # with same output from reference file $dir/$reference_output
128 # using search strings s1 and text label
129
130 if [ $debug -gt 0 ]; then
131 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
132 fi
133 if [ -r $1/$4/$OUTPUTFILE ]; then
134 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | nl > ${TMP}a.txt
135 lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
136 if [ $lncntA -lt 2 ]; then
137 if [ $verbose -gt 0 ]; then
138 echo Not enough lines of output when searching for "$2" 1>&2
139 fi
140 rm -f ${TMP}a.txt ; return 99
141 fi
142 else
143 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
144 return 99
145 fi
146 if [ $debug -gt 0 ]; then
147 echo testoutput_var: grep "$2" $1/$5 1>&2
148 fi
149 grep "$2" $1/$5 | sed 's/.*=//' | nl > ${TMP}b.txt
150 lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
151 if [ $lncntB -lt 2 ]; then
152 if [ $verbose -gt 0 ]; then
153 echo Not enough lines of output when searching for "$2" 1>&2
154 fi
155 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
156 fi
157 if [ $lncntA -ne $lncntB ]; then
158 if [ $verbose -gt 0 ]; then
159 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
160 fi
161 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
162 fi
163 has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
164 if [ $has_nan -gt 0 ] ; then
165 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
166 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
167 fi
168 has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
169 if [ $has_inf -gt 0 ] ; then
170 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
171 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
172 fi
173 if [ $debug -gt 0 ]; then
174 echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
175 fi
176 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
177 join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
178 if [ $debug -gt 0 ]; then
179 echo testoutput_var: compare_lines 1>&2
180 fi
181 if [ $verbose -gt 1 ]; then
182 cat ${TMP}c.txt 1>&2
183 fi
184 echo "-1" >> ${TMP}c.txt
185 digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
186 if [ $digits_of_similarity -eq 99 ]; then
187 if [ $verbose -gt 0 ]; then
188 echo testoutput_var: No comparison was available for \"$3\" 1>&2
189 fi
190 digits_of_similarity=99
191 else
192 if [ $verbose -gt 0 ]; then
193 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
194 fi
195 fi
196 rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
197
198 return $digits_of_similarity
199 }
200
201 testoutput_run()
202 {
203 # testoutput_run directory subdir reference_output
204 #
205 # test output from 1 run in "directory"
206 # --> same processing for adjoint & forward test
207 # default list of output variables to be checked:
208 # 1rst : main variable used to decide if it pass or FAIL
209 # others : number of matching digits to be printed in summary.txt
210 listChk=$DEF_CHECK_LIST
211 # load experiment-specific list from file "tr_checklist" (if it exist)
212 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
213 sVar=`echo $listChk | awk '{print $1}'`
214 # remove 1rst var and expand the list: + => min max mean s.d
215 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
216 | sed 's/+//g' | sed "s/^$sVar//"`
217 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
218 # set ref.outp file-name and, if compressed, uncompress it into subdir
219 refoutp=results/$3
220 if test ! -r $1/results/$3 ; then
221 if test -r $1/results/${3}.gz ; then
222 tmpNam1=$3
223 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
224 if test "x$tmpNam1" = "x$tmpNam2" ; then
225 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
226 fi
227 refoutp=$2/$tmpNam1
228 if [ $debug -gt 0 ]; then
229 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
230 fi
231 gzip -cd $1/results/${3}.gz > $1/$refoutp
232 else
233 echo "missing reference output file '$3' (.gz) in '$1/results/'"
234 fi
235 fi
236 # check for ptracer output in reference_output file :
237 if test $KIND = 0 ; then
238 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
239 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
240 for ii in $PTRACERS_NUM ; do
241 ptrfound=0
242 for jj in $ptr_mon ; do
243 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
244 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
245 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
246 done
247 if test $ptrfound = '1' ; then
248 eval "HAVE_PTR0"$ii"=t"
249 else
250 eval "HAVE_PTR0"$ii"=f"
251 # remove this ptr from the list of output variable to check
252 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
253 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
254 fi
255 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
256 done
257 fi
258 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
259 if test $tst != 1 ; then
260 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
261 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
262 echo "==> WARNING: in checked list:" $listVar 1>&2
263 #- put it back once:
264 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
265 fi
266 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
267 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
268 #---
269 allargs=""
270 for xx in $listVar
271 do
272 case $xx in
273 'PS') if [ $debug -gt 0 ]
274 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
275 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
276 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
277 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
278 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
279 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
280 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
281 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
282 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
283 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
284 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
285 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
286 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
287 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
288 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
289 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
290 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
291 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
292 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
293 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
294 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
295 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
296 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
297 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
298 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
299 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
300 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
301 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
302 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
303 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
304 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
305 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
306 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
307 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
308 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
309 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
310 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
311 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
312 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
313 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
314 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
315 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
316 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
317 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
318 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
319 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
320 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
321 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
322 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
323 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
324 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
325 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
326 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
327 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
328 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
329 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
330 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
331 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
332 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
333 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
334 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
335 'sbo_M') testoutput_var $1 "sbo_mass" "SBO mass" $2 $refoutp ; yy=$? ;;
336 'sboFW') testoutput_var $1 "sbo_mass_fw" "SBO m-FW" $2 $refoutp ; yy=$? ;;
337 'sboAc') testoutput_var $1 "sbo_zoamc" "SBO AM-C" $2 $refoutp ; yy=$? ;;
338 'sboAp') testoutput_var $1 "sbo_zoamp" "SBO AM-P" $2 $refoutp ; yy=$? ;;
339 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
340 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
341 esac
342 if test $xx = $sVar
343 then allargs="$allargs > $yy <"
344 else allargs="$allargs $yy"
345 fi
346 done
347
348 nbVar=`echo $listVar | awk '{print NF}'`
349 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
350 #-- fill line (up to standard length) with dot:
351 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
352 echo $allargs $adNul
353 else
354 echo $allargs
355 fi
356 # <-- same processing for adjoint & forward test
357 }
358
359 genmakemodel()
360 {
361 # genmakemodel directory
362 if test "x$NOGENMAKE" = xt ; then
363 echo "genmake skipped!"
364 else
365 if test "x$BASH" = x ; then
366 GENMAKE2="../../../tools/genmake2"
367 else
368 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
369 fi
370 (
371 cd $1;
372 command="$GENMAKE2 -ds -m $MAKE"
373 if test "x$MKDEPEND" != x ; then
374 command="$command -makedepend=$MKDEPEND"
375 fi
376 if test $KIND = 4 ; then
377 command="$command -oad -mods=../$code_dir"
378 else
379 command="$command -mods=../$code_dir"
380 fi
381 if test "x$OPTFILE" != xNONE ; then
382 command="$command -optfile=$OPTFILE"
383 fi
384 if test $OptLev = 1 ; then
385 command="$command -ieee"
386 fi
387 if test $OptLev = 0 ; then
388 command="$command -devel"
389 fi
390 if test "x$GSL" = xt ; then
391 command="$command -gsl"
392 fi
393 if test "x$MPI" != x0 ; then
394 command="$command -mpi"
395 fi
396 if test "x$MULTI_THREAD" = xt ; then
397 #- run multi-threaded using OpenMP:
398 command="$command -omp"
399 fi
400 if test "x$USE_R4" = xt ; then
401 command="$command -use_r4"
402 fi
403 if test "x$EXTRFLG" != x ; then
404 command="$command -extra_flag $EXTRFLG"
405 fi
406 if test "x$NOCATAD" = xt ; then
407 command="$command -nocat4ad"
408 fi
409 if test "x$TS" = xt ; then
410 command="$command -ts"
411 fi
412 if test "x$PAPIS" = xt ; then
413 command="$command -papis"
414 else
415 if test "x$PCLS" = xt ; then
416 command="$command -pcls"
417 fi
418 fi
419 printf 'genmake ... '
420 eval $command > genmake.tr_log 2>&1
421 RETVAL=$?
422 # Reduce the size of the testing emails!
423 head -100 Makefile > $CDIR/Makefile_head
424 if test "x$RETVAL" != x0 ; then
425 tail genmake.tr_log
426 echo "genmakemodel: genmake failed"
427 cp genmake.log genmake_* genmake.tr_log $CDIR
428 return 1
429 else
430 echo "successful"
431 fi
432 )
433 fi
434 }
435
436 makeclean()
437 {
438 # makeclean directory
439 if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
440 if test "x$NOCLEAN" = xt ; then
441 echo "make Clean skipped!"
442 else
443 (
444 cd $1;
445 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
446 if test -r Makefile ; then
447 printf 'clean build-dir: make Clean ... '
448 $MAKE Clean >> make.tr_log 2>&1
449 RETVAL=$?
450 if test "x$RETVAL" != x0 ; then
451 tail make.tr_log
452 echo "makeclean: \"make Clean\" failed"
453 cp make.tr_log genmake.log genmake.tr_log $CDIR
454 return 1
455 fi
456 echo successful
457 else
458 echo ''
459 fi
460 exit 0
461 )
462 fi
463 }
464
465 run_clean()
466 {
467 # run_clean directory
468 if test "x$NOCLEAN" = xt ; then
469 echo "run_clean skipped!"
470 else
471 (
472 cd $1;
473 printf 'clean run-dir ... '
474 # part of what is done after "make clean" when doing "make CLEAN"
475 find . -name "*.meta" -exec rm {} \;
476 find . -name "*.data" -exec rm {} \;
477 find . -name "fort.*" -exec rm {} \;
478 find . -type l -exec rm {} \;
479 #- should remove executable only if sym-link (already done above)
480 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
481 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
482 rm -f *_MIT_CE_000.opt0000 costfunction*0000
483 rm -f oad_cp.[0-9][0-9][0-9].?????
484 rm -rf mnc_test_*
485 echo successful
486 exit 0
487 )
488 fi
489 }
490
491 makedependmodel()
492 {
493 # makedependmodel directory
494 if test "x$NODEPEND" = xt ; then
495 echo "make depend skipped!"
496 else
497 (
498 cd $1;
499 printf 'make depend ... '
500 $MAKE depend >> make.tr_log 2>&1
501 RETVAL=$?
502 if test "x$RETVAL" != x0 ; then
503 tail make.tr_log
504 echo "makedependmodel: make depend failed"
505 cp make.tr_log genmake.log genmake.tr_log $CDIR
506 return 1
507 else
508 echo successful
509 fi
510 )
511 fi
512 }
513
514 makemodel()
515 {
516 # makemodel directory
517 (
518 mk_fail=0
519 if test "x$NOMAKE" = xt ; then
520 cd $1;
521 if test -x $EXECUTABLE ; then
522 echo "make skipped!"
523 else
524 echo "no executable!"
525 mk_fail=3
526 fi
527 else
528 cd $1;
529 if test -r Makefile ; then
530 printf 'make ... '
531 $MAKE_CMD $TARG >> make.tr_log 2>&1
532 RETVAL=$?
533 if test "x$RETVAL" != x0 ; then
534 tail make.tr_log
535 echo failed
536 cp genmake.log genmake.tr_log $CDIR
537 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
538 rm -f $EXECUTABLE
539 mk_fail=1
540 else
541 echo successful
542 fi
543 else
544 echo "no Makefile !"
545 mk_fail=2
546 fi
547 fi
548 if test $KIND = 1 -a -f taf_ftl.log ; then
549 head -1 taf_ftl.log >> $CDIR"/summary.txt"
550 fi
551 if test $KIND = 2 -a -f taf_ad.log ; then
552 head -1 taf_ad.log >> $CDIR"/summary.txt"
553 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
554 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
555 if test -f taf_output ; then
556 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
557 n3er=`grep -c '\*ERROR\* ' taf_output`
558 nerr=`expr $nerr + $n2er + $n3er`
559 fi
560 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
561 >> $CDIR"/summary.txt"
562 fi
563 if test $mk_fail != 0 ; then return $mk_fail ; fi
564 )
565 }
566
567 mk_mpi_size()
568 {
569 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
570 #
571 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
572 # for an MPI build with no more than proc_Nb processors ;
573 # ensure that enough tiles per proc (nSx,nSy) remain for the given
574 # number of threads (nTx,nTy) ;
575 # return the effective number of processors.
576
577 inp=$1
578 out=$2
579 np=$3
580 tx=$4
581 ty=$5
582 tmp=TTT.$$
583
584 # dirX : select with direction to favor in MPI process repartition
585 # dirX=1 : prefer to put more proc in X direction
586 # dirX=0 : prefer to put more proc in Y direction
587 dirX=0
588
589 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
590 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
591 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
592 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
593
594 #- for each direction, assume # of threads is a multiple of total number of tiles
595 nx=$px
596 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
597 nx=`expr $sx \* $px / $tx`
598 if [ $verbose -gt 1 ]; then
599 echo " change px from $px to $nx to accommodate $tx threads"
600 fi
601 fi
602 ny=$py
603 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
604 ny=`expr $sy \* $py / $ty`
605 if [ $verbose -gt 1 ]; then
606 echo " change py from $py to $ny to accommodate $ty threads"
607 fi
608 fi
609 #- find the largest divisor of input_file proc Nb, but not larger than $np
610 pp=0
611 i=1
612 while [ $i -le $nx ] ; do
613 if [ `expr $nx % $i` -eq 0 ] ; then
614 j=1
615 while [ $j -le $ny ] ; do
616 if [ `expr $ny % $j` -eq 0 ] ; then
617 ij=`expr $i \* $j`
618 if [ $ij -gt $pp ] ; then
619 flag=1
620 elif [ $ij -eq $pp ] ; then
621 flag=$dirX
622 else
623 flag=0
624 fi
625 if test $flag = 1 ; then
626 if [ $ij -le $np ] ; then
627 ix=$i ; jy=$j ; pp=$ij
628 #echo " ix,jy= $ix,$jy"
629 fi
630 fi
631 fi
632 j=`expr $j + 1`
633 done
634 fi
635 i=`expr $i + 1`
636 done
637
638 #- create new SIZE.h type file:
639 sx=`expr $sx \* $px / $ix`
640 sy=`expr $sy \* $py / $jy`
641 if [ $verbose -gt 1 ]; then
642 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
643 fi
644 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
645 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
646 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
647 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
648 rm -f $tmp
649 return $pp
650 }
651
652 symlink_mpifiles()
653 {
654 # Put special links so that MPI specific files are used
655 # This MUST be invoked between makeclean and makelinks because
656 # the Makefile will link to non-mpi files by default
657
658 dir=$1
659 code_dir=$2
660 build_dir=$dir/$3
661
662 # These are files that should replace their counter-part when using -mpi
663 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
664
665 for ii in $MPI_FILES ; do
666 i=`echo $ii | sed 's:^\./::'`
667 name=`echo $i | sed 's:_mpi::'`
668 file="../$code_dir/$i"
669 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
670
671 # Is this an MPI run?
672 if test "x$MPI" = x0 ; then
673 # NO: We undo any _mpi symbolically linked files
674 if test -L $build_dir/$name ; then
675 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
676 RETVAL=$?
677 if test "x$RETVAL" = x0 ; then
678 if [ $verbose -gt 1 ]; then
679 echo " Un-linking $name from ../$code_dir" ; fi
680 rm -f $build_dir/$name
681 fi
682 fi
683 else
684 # YES: We symbolically link these files to the build
685 # dir so long as there is no real file in place
686 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
687 RETVAL=$?
688 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
689 if test "x$RETVAL" != x0 ; then
690 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
691 if test ! -r $build_dir/$name ; then
692 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
693 (cd $build_dir; ln -sf $file $name)
694 fi
695 fi
696 fi
697 done
698 }
699
700 linkdata()
701 {
702 # linkdata run_dir input_dir_1 input_dir_2 ...
703 #
704 # symbolically link data files to run directory
705 if test -d $1 ; then
706 (
707 cd $1 ; shift
708 echo 'linkdata from dirs:' $*
709 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
710 for xx in $inpMPI ; do
711 if test -r "../"$1"/"$xx ; then
712 # found 1 _mpi sfx file in 1rst input dir and it is readable
713 yy=`echo $xx | sed 's:\.mpi$::'`
714 if test "x$MPI" = "x0" ; then
715 # not mpi test: remove symbolic link
716 if test -h $yy ; then rm -f $yy ; fi
717 else
718 # mpi test: remove symbolic link & link .mpi sfx file
719 if test -h $yy ; then rm -f $yy ; fi
720 if test ! -r $yy ; then
721 ln -sf "../"$1"/"$xx $yy ;
722 printf " $xx" 1>&2
723 fi
724 fi
725 fi
726 done
727 if test -r "../"$1"/eedata.mth" ; then
728 # found eedata.mth in 1rst input dir and it is readable
729 if test "x$MULTI_THREAD" = "xt" ; then
730 # multi-threaded test: remove symbolic link & link eedata.mth
731 if test -h eedata ; then rm -f eedata ; fi
732 if test ! -r eedata ; then
733 ln -sf "../"$1"/eedata.mth" eedata ;
734 printf ' eedata.mth' 1>&2
735 fi
736 else
737 # not multi-threaded test: remove eedata symbolic link
738 if test -h eedata ; then rm -f eedata ; fi
739 fi
740 fi
741 prevDir='NONE'
742 for ldir in $* ; do
743 if test -d "../"$ldir -a $ldir != $prevDir ; then
744 printf " ldir=${ldir}:" 1>&2
745 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
746 for i in $files ; do
747 if test ! -d "../"$ldir/$i ; then
748 if test ! -r $i ; then
749 printf ' '$i 1>&2
750 ln -sf "../"$ldir"/"$i $i
751 fi
752 fi
753 done
754 printf ' ;' 1>&2
755 if test -x "../"$ldir"/"prepare_run ; then
756 "../"$ldir"/"prepare_run 1>&2
757 else
758 echo '' 1>&2
759 fi
760 fi
761 prevDir=$ldir
762 done
763 )
764 fi
765 }
766
767 runmodel()
768 {
769 # runmodel directory
770 #
771 # runs $COMMAND in "directory"
772 # (where "$COMMAND" is relative to "directory")
773 (
774 cd $1
775 printf 'runmodel in %s ... ' $1
776 if test "x$MPI" != x0 ; then
777 #- adjust the MPI run command with the right number of Procs
778 #echo '' ; echo " COMMAND='$COMMAND'"
779 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC/ $LOC_NPROC/"`
780 if test "x$MPI_MFILE" != x ; then
781 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
782 fi
783 #echo " COMMAND='$COMMAND'"
784 fi
785 if test -L $EXECUTABLE ; then
786 if test -x "../"$builddir"/"$EXECUTABLE ; then
787 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
788 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
789 else rm -f $EXECUTABLE
790 fi
791 fi
792 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
793 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
794 ln -sf "../"$builddir"/"$EXECUTABLE .
795 fi
796 if test ! -x $EXECUTABLE ; then
797 rm -f $RUNLOG ; touch $RUNLOG
798 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
799 echo " no executable:" $EXECUTABLE >> $RUNLOG
800 RETVAL=8
801 ENDVAL=-1
802 else
803 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
804 # output do not exist or is older than executable:
805 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
806 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
807 #- Divided Adjoint Run:
808 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
809 if test $KIND = 2 -a -f run_ADM_DIVA ; then
810 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
811 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
812 eval "let $adm_diva_nb"
813 if [ $add_DIVA_runs -ge 1 ] ; then
814 rm -f costf* divided.ctrl snapshot*
815 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
816 for ii in `seq 1 $add_DIVA_runs` ; do
817 ( eval $COMMAND ) >> $RUNLOG 2>&1
818 echo " additional DIVA run # $ii : done" >> $RUNLOG
819 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
820 done
821 fi
822 fi
823 #- special DIVA processing ends here
824 ( eval $COMMAND ) >> $RUNLOG 2>&1
825 RETVAL=$?
826 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
827 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
828 find . -name "*.meta" -exec rm {} \;
829 find . -name "*.data" -exec rm {} \;
830 rm -rf mnc_test_*
831 fi
832 else
833 RETVAL=0
834 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
835 touch $RUNLOG
836 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
837 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
838 fi
839 fi
840 rm -f run.log_tmp
841 #- in all cases where OutputFile exists, report SIZE and time
842 if test -f $OUTPUTFILE ; then
843 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
844 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
845 # grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
846 # | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
847 # some implementations of grep cannot do contextual searches so we
848 # replace the above with a sed command
849 cat $OUTPUTFILE | sed -n '/Seconds in section "ALL/{N
850 N
851 N
852 p
853 }' | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
854 fi
855 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
856 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
857 echo successful
858 printf '=> output from running in %s :\n' $1 1>&2
859 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
860 return 0
861 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
862 #-- for some weird cases (run is finihed but with error code)
863 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
864 printf '=> output from running in %s :\n' $1 1>&2
865 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
866 return 0
867 else
868 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
869 printf '=> output from running in %s :\n' $1 1>&2
870 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
871 cp $RUNLOG $CDIR"/"$RUNLOG
872 return 1
873 fi
874 )
875 }
876
877 createcodelet()
878 {
879 # create codelet for comparing model output
880
881 printf "creating the comparison code (using CC=$CC)... "
882 cat > tr_cmpnum.c <<EOF
883 #include <stdio.h>
884 #include <math.h>
885 int main( int argc, char** argv ) {
886 int linnum,cmplin,best,lncnt;
887 double a,b,abave,relerr;
888 best = -22;
889 lncnt = 0;
890 while( 1 & ( (lncnt+=1) < 999 ) ) {
891 scanf("%d", &linnum);
892 if (linnum == -1) break;
893 scanf("%lf", &a); scanf("%lf", &b);
894 abave = 0.5*(fabs(a)+fabs(b));
895 if ( abave == abave ) {
896 if (abave > 0.0) {
897 relerr=fabs(a-b)/abave;
898 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
899 else { cmplin = -16 ; }
900 best = (best > cmplin) ? best : cmplin; }
901 else { cmplin = -22 ; }
902 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
903 }
904 else {
905 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
906 break; }
907 }
908 if (lncnt == 999) best=-29;
909 if (linnum != -1) best=-99;
910 printf("%d\n", -best);
911 return 0;
912 }
913 EOF
914 $CC -o tr_cmpnum tr_cmpnum.c -lm
915
916 if [ -x ./tr_cmpnum ]; then
917 echo "OK"
918 return 0
919 else
920 echo
921 echo "ERROR: failed to compile comparison code -- please specify"
922 echo " a C compiler using the CC environment variable."
923 exit 1
924 fi
925 }
926
927 formatresults()
928 {
929 # formatresults expt genmake depend make run results*
930
931 nm=$1
932 printf '%s %s %s %s' $2 $3 $4 $5
933 shift; shift; shift; shift; shift;
934 listPrt=$@
935 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
936 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
937 printf '%3s' $listPrt
938 # line below does not work on hp-ux_ia64 : do those substitutions later on
939 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
940
941 if [ $xx = '..' ]; then
942 printf ' N/O '
943 elif [ $xx = '--' ]; then
944 printf ' N/O '
945 elif [ $xx = 99 ]; then
946 printf ' N/O '
947 else
948 if [ $xx -ge $MATCH_CRIT ]; then
949 printf ' pass'
950 else
951 printf ' FAIL'
952 fi
953 fi
954 printf ' %s' $nm
955 if test $KIND = 2 ; then
956 #-- apppend taf repport summary:
957 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
958 if test $tafrep = 1 ; then
959 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
960 fi
961 fi
962 printf '\n'
963
964 }
965
966 scandirs()
967 {
968 if [ $# -eq 1 ]; then
969 for arg in * ; do
970 #test -f $arg/$1 && echo $arg
971 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
972 done
973 else
974 echo $*
975 fi
976 }
977
978
979 check_eedata()
980 {
981 # check_eedata eedata size.h
982 if [ $# -eq 2 ] ; then
983 if test -f $1 -a -f $2 ; then
984 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
985 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
986 if test "x$nx" = x ; then
987 rx=10
988 else
989 rx=`expr $sx % $nx`
990 fi
991 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
992 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
993 if test "x$ny" = x ; then
994 ry=20
995 else
996 ry=`expr $sy % $ny`
997 fi
998 echo `expr $rx + $ry`
999 else
1000 echo '-1'
1001 fi
1002 elif [ $# -eq 1 ] ; then
1003 if test -f $1 ; then
1004 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1005 if test "x$nx" = x ; then nx=1 ; fi
1006 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1007 if test "x$ny" = x ; then ny=1 ; fi
1008 #echo $nx $ny
1009 echo $nx
1010 else
1011 echo '-1'
1012 fi
1013 else
1014 echo '-2'
1015 fi
1016
1017 }
1018
1019 ###############################################################################
1020
1021
1022 # Default properties
1023 debug=0
1024 verbose=1
1025 NBLINES_MKLOG=16000
1026
1027 OptLev=1
1028 GSL=f
1029
1030 CLEANUP=f
1031 NORUN=f
1032 QUICK=f
1033 NOMAKE=f
1034 NOGENMAKE=f
1035 NOCLEAN=f
1036 NODEPEND=f
1037 POSTCLEAN=0
1038
1039 BASH=
1040 OPTFILE=NONE
1041 ADDRESSES=
1042 TESTDIRS=
1043 SKIPDIRS=
1044 MPACKDIR="../tools/mpack-1.6"
1045 HAVE_MPACK=
1046 MPACK=
1047 SENDCMD=
1048 SAVDIR='.'
1049 COMMAND=
1050 MKDEPEND=
1051 if test "x$MAKE" = x ; then
1052 MAKE=make
1053 fi
1054 MAKE_CMD=
1055 if test "x$CC" = x ; then
1056 CC=cc
1057 fi
1058 JOBS=
1059 TARG=
1060 MPI=0
1061 MPI_MFILE=
1062 MULTI_THREAD=f
1063 OUTDIR=
1064 DELDIR=
1065 USE_R4=
1066 EXTRFLG=
1067 NOCATAD=
1068
1069 #- type of testing (KIND):
1070 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1071 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1072 KIND=0
1073
1074 # list of pTracers to check for monitor output
1075 PTRACERS_NUM="1 2 3 4 5"
1076
1077 MATCH_CRIT=10
1078
1079 printf "parsing options... "
1080
1081 ac_prev=
1082 for ac_option ; do
1083
1084 # If the previous option needs an argument, assign it.
1085 if test -n "$ac_prev"; then
1086 eval "$ac_prev=\$ac_option"
1087 ac_prev=
1088 continue
1089 fi
1090
1091 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1092
1093 case $ac_option in
1094
1095 -help | --help | -h | --h) usage ;;
1096
1097 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1098 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1099
1100 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1101 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1102 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1103 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1104
1105 -send | --send ) ac_prev=SENDCMD ;;
1106 -send=* | --send=* ) SENDCMD=$ac_optarg ;;
1107 -savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
1108 -savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
1109
1110 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1111 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1112 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1113 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1114
1115 -bash | --bash | -b | --b) ac_prev=BASH ;;
1116 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1117
1118 -command | --command | -c | --c) ac_prev=COMMAND ;;
1119 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1120
1121 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1122 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1123
1124 -make | --make | -m | --m) ac_prev=MAKE ;;
1125 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1126
1127 -repl_mk | --repl_mk ) ac_prev=MAKE_CMD ;;
1128 -repl_mk=* | --repl_mk=*) MAKE_CMD=$ac_optarg ;;
1129
1130 -odir | --odir) ac_prev=OUTDIR ;;
1131 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1132
1133 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1134 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1135
1136 -match | --match ) ac_prev=MATCH_CRIT ;;
1137 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1138
1139 -j | --j) ac_prev=JOBS ;;
1140 -j=* | --j=*) JOBS=$ac_optarg ;;
1141
1142 -ef | --ef) ac_prev=EXTRFLG ;;
1143 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1144
1145 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1146
1147 -norun | --norun | -nr | --nr) NORUN=t ;;
1148 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1149 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1150 -quick | --quick | -q | --q) QUICK=t ;;
1151 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1152 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1153 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1154
1155 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1156 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1157
1158 -mpi | --mpi) MPI=2 ;;
1159 -MPI | --MPI) ac_prev=MPI ;;
1160 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1161
1162 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1163 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1164
1165 -mth) MULTI_THREAD=t ;;
1166
1167 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1168 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1169 fi ;;
1170 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1171 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1172 fi ;;
1173 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1174 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1175 fi ;;
1176 -ncad) NOCATAD=t ;;
1177
1178 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1179 printf " ... " ;;
1180 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1181 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1182 -fast) OptLev=`expr $OptLev \* 2` ;;
1183 -devel) OptLev=0 ;;
1184 -gsl) GSL=t ;;
1185
1186 -verbose) verbose=2 ;;
1187 -debug) debug=1 ;;
1188 -quiet) verbose=0 ;;
1189
1190 -deldir | -dd) DELDIR=t ;;
1191
1192 -use_r4|-ur4) USE_R4=t ;;
1193
1194 -ts) TS=t;;
1195 -papis) PAPIS=t;;
1196 -pcls) PCLS=t;;
1197
1198 -*) echo "Error: unrecognized option: "$ac_option
1199 usage ;;
1200 *) echo "Error: unrecognized argument: "$ac_option
1201 usage ;;
1202
1203 esac
1204
1205 done
1206
1207 if test "x$QUICK" = xt ; then
1208 NOGENMAKE=t
1209 NOCLEAN=t
1210 NODEPEND=t
1211 fi
1212 if test "x$MAKE_CMD" = x ; then MAKE_CMD=$MAKE ; fi
1213
1214 #- check length of MPI machine file:
1215 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1216 if test -r $MPI_MFILE ; then
1217 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1218 if [ $nl -lt $MPI ] ; then
1219 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1220 usage
1221 fi
1222 if [ $verbose -gt 1 ]; then
1223 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1224 fi
1225 else
1226 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1227 usage
1228 fi
1229 fi
1230
1231 #- setting for forward or ADM testing
1232 if test $KIND = 1 ; then
1233 TARG=ftlall
1234 code_dir=code_ad
1235 inputdir=input_ad
1236 ref_outp="output_tlm.txt"
1237 EXECUTABLE="mitgcmuv_ftl"
1238 elif test $KIND = 2 ; then
1239 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1240 code_dir=code_ad
1241 inputdir=input_ad
1242 ref_outp="output_adm.txt"
1243 EXECUTABLE="mitgcmuv_ad"
1244 elif test $KIND = 4 ; then
1245 TARG=adAll
1246 code_dir=code_oad
1247 inputdir=input_oad
1248 ref_outp="output_oadm.txt"
1249 EXECUTABLE="mitgcmuv_ad"
1250 else
1251 code_dir=code
1252 inputdir=input
1253 ref_outp="output.txt"
1254 EXECUTABLE="mitgcmuv"
1255 fi
1256 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1257
1258 xx=`echo $TESTDIRS | awk '{print $1}'`
1259 if test "x$TESTDIRS" = x ; then
1260 LIST=`scandirs results/$ref_outp`
1261 elif test $xx = 'start_from' ; then
1262 xx=`echo $TESTDIRS | awk '{print $2}'`
1263 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1264 else
1265 #- expand group of experiments:
1266 LIST=" "
1267 for xx in $TESTDIRS
1268 do
1269 case $xx in
1270 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1271 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1272 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1273 ;;
1274 'tutorials')
1275 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1276 *) LIST=${LIST}" "$xx ;;
1277 esac
1278 done
1279 fi
1280 #echo 'LIST='${LIST}'<'
1281 #- skip dirs, remove duplicate and non-directory:
1282 TESTDIRS=" "
1283 count=0
1284 for xx in $LIST
1285 do
1286 yy=`echo $SKIPDIRS | grep -c $xx`
1287 if test $yy = 0 ; then
1288 if test -d $xx ; then
1289 yy=`echo $TESTDIRS | grep -c $xx`
1290 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1291 else count=1 ;
1292 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1293 fi
1294 else
1295 if test $count = 1 ; then echo -n ", \"$xx\""
1296 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1297 fi
1298 fi
1299 done
1300 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1301 #echo 'TESTDIRS='${TESTDIRS}'<'
1302
1303 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1304 OPTFILE=$MITGCM_OF
1305 fi
1306
1307 LOC_MFILE='tr_mpi_mfile'
1308 RUNLOG="run.tr_log"
1309 if test "x$MPI" = x0 ; then
1310 OUTPUTFILE=$ref_outp
1311 if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi
1312 else
1313 OUTPUTFILE="STDOUT.0000"
1314 if test "x$COMMAND" = x ; then COMMAND="mpirun -v -np TR_NPROC ./$EXECUTABLE" ; fi
1315 fi
1316
1317 echo "OK (COMMAND='$COMMAND')"
1318
1319 #TMP=./tr_$$
1320 #- try to put temporary files in system-local /tmp dir
1321 TMP=/tmp/tr_${USER}_$$
1322 touch $TMP ; retVal=$?
1323 if [ $retVal -eq 0 ] ; then
1324 if test ! -r $TMP ; then TMP=./tr_$$ ; fi
1325 else
1326 TMP=./tr_$$
1327 fi
1328 rm -f $TMP
1329 if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
1330
1331 # set the Default List of output variables to be checked:
1332 # (use default or load experiment-specific list from file "tr_checklist")
1333 # content : 1rst = main variable used to decide if it pass or FAIL
1334 # others = number of matching digits to be printed in summary.txt
1335 if test $KIND = 1 ; then
1336 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1337 EMPTY_RESULTS='.. .. ..'
1338 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1339 elif test $KIND = 2 -o $KIND = 4 ; then
1340 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1341 EMPTY_RESULTS='.. .. ..'
1342 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1343 else
1344 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1345 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1346 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1347 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1348 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1349 fi
1350
1351 # create the FORTRAN comparison code
1352 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1353 echo "skipping comparison code build"
1354 else
1355 createcodelet
1356 fi
1357
1358 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1359 if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
1360 echo "skipping mpack build"
1361 else
1362 build_mpack
1363 if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
1364 fi
1365
1366 # Create a uniquely named directory to store results
1367 CMDLINE=$0
1368 for xx in "$@" ; do nw=`echo $xx | wc -w`
1369 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1370 nb=`echo $xx | grep -c '='`
1371 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1372 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1373 CMDLINE="$CMDLINE $yy" ; fi
1374 fi
1375 done
1376 MACH=`hostname`
1377 UNAMEA=`uname -a`
1378 DATE=`date +%Y%m%d`
1379 BASE="tr_"$MACH"_"$DATE"_"
1380 if test "x$OUTDIR" != x ; then
1381 BASE="tr_"$OUTDIR"_"$DATE"_"
1382 else
1383 #short_name=`hostname -s | tr '[:upper:]' '[:lower:]'`
1384 # hostname -s is not universal (does work on AIX system)
1385 short_name=`hostname | sed 's/\..*$//' | tr '[:upper:]' '[:lower:]'`
1386 BASE="tr_"$short_name"_"$DATE"_"
1387 fi
1388 DNUM=0
1389 DRESULTS="$BASE$DNUM"
1390 while test -e $DRESULTS ; do
1391 DNUM=$(( $DNUM + 1 ))
1392 DRESULTS="$BASE$DNUM"
1393 done
1394 mkdir $DRESULTS
1395 RETVAL=$?
1396 if test "x$RETVAL" != x0 ; then
1397 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1398 exit 1
1399 fi
1400 SUMMARY="$DRESULTS/summary.txt"
1401 start_date=`date`
1402 echo $start_date > $SUMMARY
1403 echo 'run:' $CMDLINE >> $SUMMARY
1404 echo 'on :' $UNAMEA >> $SUMMARY
1405
1406 of_path=
1407 if test "x$OPTFILE" != xNONE ; then
1408 if test -r $OPTFILE ; then
1409 # get the path
1410 path=${OPTFILE%/*}
1411 if test "x$path" = x ; then
1412 of_path=`pwd`
1413 else
1414 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1415 fi
1416 file=${OPTFILE##*/}
1417 OPTFILE=$of_path/$file
1418 cp $OPTFILE $DRESULTS
1419 echo >> $SUMMARY
1420 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1421 else
1422 echo | tee -a $SUMMARY
1423 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1424 exit 1
1425 fi
1426 else
1427 echo >> $SUMMARY
1428 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1429 #-note: to be filled later after 1rst run
1430 fi
1431 echo
1432 echo >> $SUMMARY
1433 if test $KIND = 0 ; then
1434 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1435 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1436 line_1="G D M c m s m s m s m s"
1437 line_2="e p a R g m m e . m m e . m m e . m m e ."
1438 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1439 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1440 for ii in $PTRACERS_NUM ; do
1441 line_0="$line_0 --PTR 0"$ii"--"
1442 line_1="$line_1 m s"
1443 line_2="$line_2 m m e ."
1444 line_3="$line_3 i a a d"
1445 line_4="$line_4 n x n ."
1446 done
1447 else
1448 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1449 if test $KIND = 1 ; then
1450 #echo "TANGLIN=true" >> $SUMMARY
1451 echo "TangLin generated by TAF" >> $SUMMARY
1452 elif test $KIND = 3 ; then
1453 echo "TangLin generated by OpenAD" >> $SUMMARY
1454 elif test $KIND = 2 ; then
1455 #echo "ADJOINT=true" >> $SUMMARY
1456 echo "Adjoint generated by TAF" >> $SUMMARY
1457 else
1458 echo "Adjoint generated by OpenAD" >> $SUMMARY
1459 fi
1460 if test $KIND = 1 -o $KIND = 3 ; then
1461 line_1="G D M C T F"
1462 line_2="e p a R o L D"
1463 else
1464 line_1="G D M C A F"
1465 line_2="e p a R o d D"
1466 fi
1467 line_3="n n k u s G G"
1468 line_4="2 d e n t r r"
1469 echo >> $SUMMARY
1470 fi
1471 if test "x$CLEANUP" != xt ; then
1472 echo "$line_0" | tee -a $SUMMARY
1473 echo "$line_1" | tee -a $SUMMARY
1474 echo "$line_2" | tee -a $SUMMARY
1475 echo "$line_3" | tee -a $SUMMARY
1476 echo "$line_4" | tee -a $SUMMARY
1477 echo "" | tee -a $SUMMARY
1478 fi
1479 echo "-------------------------------------------------------------------------------"
1480
1481 # ...and each test directory...
1482 for dir in $TESTDIRS ; do
1483
1484 # set builddir & rundir:
1485 builddir="build"
1486 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1487 rundir="run"
1488 pfxdir="tr_$rundir"
1489 if test ! -d $dir/$rundir ; then
1490 rundir=$builddir
1491 fi
1492 CODE_DIR=$dir/$code_dir
1493 BUILD_DIR=$dir/$builddir
1494
1495 # Cleanup only!
1496 if test "x$CLEANUP" = xt ; then
1497 echo -n ' --- dir:' $BUILD_DIR ': '
1498 makeclean $BUILD_DIR
1499 ( cd $BUILD_DIR
1500 rm -f $EXECUTABLE *.bak
1501 rm -f genmake_state genmake_*optfile genmake.log
1502 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1503 rm -rf mpi_headers
1504 )
1505 if test -d $dir/$rundir/CVS ; then
1506 echo -n ' --- dir:' $dir/$rundir ': '
1507 run_clean $dir/$rundir
1508 fi
1509 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1510 ttd=`echo $trdir | wc -w`
1511 if test $ttd != 0 ; then
1512 echo ' --- rm dir:' $trdir
1513 ( cd $dir ; rm -rf $trdir )
1514 fi
1515 continue
1516 fi
1517
1518 # Verify that the testdir exists and contains previous
1519 # results in the correct location--or skip this directory!
1520 fout=$dir"/results/"$ref_outp
1521 #if test ! -r $fout ; then
1522 if test ! -r $fout -a ! -r ${fout}.gz ; then
1523 echo "can't read \"$fout\" -- skipping $dir"
1524 continue
1525 fi
1526
1527 # Check for specific files for particular type of run
1528
1529 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1530 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1531 continue
1532 fi
1533 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1534 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1535 continue
1536 fi
1537
1538 if test "x$MPI" != "x0" ; then
1539 ntx=1 ; nty=1
1540 if test "x$MULTI_THREAD" = "xt" ; then
1541 ff=$dir"/input/eedata.mth"
1542 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1543 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1544 if test "x$ntx" = x ; then ntx=1 ; fi
1545 if test "x$nty" = x ; then nty=1 ; fi
1546 fi
1547 #- create new SIZE.h with no more than '$MPI' Procs
1548 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1549 LOC_NPROC=$?
1550 ( cd $BUILD_DIR
1551 if test -r SIZE.h.mpi ; then
1552 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1553 else RETVAL=1
1554 fi
1555 if test "x$RETVAL" = x0 ; then
1556 rm -f tr_size.mpi
1557 else
1558 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1559 fi
1560 )
1561 if test "x$MPI_MFILE" != x ; then
1562 #- create new MPI machine-file with the right number of Procs
1563 rm -f $LOC_MFILE
1564 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1565 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1566 if [ $nl -lt $LOC_NPROC ] ; then
1567 rm -f $LOC_MFILE
1568 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1569 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1570 fi
1571 if [ $verbose -gt 1 ]; then
1572 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1573 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1574 fi
1575 fi
1576 if test "x$MULTI_THREAD" = "xt" ; then
1577 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1578 if test $retv != 0 ; then
1579 echo "input/eedata.mth tiling misfit -- skipping $dir"
1580 continue
1581 fi
1582 fi
1583 fi
1584
1585 # Check whether there are "extra runs" for this testdir
1586 extra_runs=
1587 if test "x$NORUN" = xf ; then
1588 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1589 fi
1590 #echo "ex_run_dirs='$ex_run_dirs'"
1591 for exd in $ex_run_dirs ; do
1592 name=`echo $exd | sed -e "s/$inputdir\.//"`
1593 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1594 outf="$dir/results/$refExOut"
1595 if test -r $outf -o -r ${outf}.gz ; then
1596 if test "x$MULTI_THREAD" = "xt" ; then
1597 if test -r $dir"/"$exd"/eedata.mth" ; then
1598 if test "x$MPI" = "x0" ; then
1599 extra_runs="$extra_runs $name"
1600 else
1601 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1602 if test $retv = 0 ; then
1603 extra_runs="$extra_runs $name"
1604 else
1605 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1606 fi
1607 fi
1608 #else echo $dir"/"$exd"/eedata.mth: not found"
1609 fi
1610 else
1611 extra_runs="$extra_runs $name"
1612 fi
1613 fi
1614 done
1615
1616 echo
1617 if test "x$extra_runs" = "x" ; then
1618 echo "Experiment: $dir"
1619 else
1620 echo "Experiment: $dir ; extra_runs=$extra_runs"
1621 fi
1622 echo
1623 unset genmake makedepend make run
1624 results=$EMPTY_RESULTS
1625
1626 # Create an output dir & summary.txt file for each tested experiment (tdir)
1627 locDIR=$DRESULTS"/"$dir
1628 mkdir $locDIR
1629 #- report to this experiment local summary file ---
1630 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1631 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1632 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1633 CDIR=`pwd`"/$locDIR"
1634
1635 if test "x$NORUN" = xt ; then
1636 run=N
1637 genmakemodel $dir/$builddir && genmake=Y \
1638 && makeclean $dir/$builddir \
1639 && symlink_mpifiles $dir $code_dir $builddir \
1640 && makedependmodel $dir/$builddir && makedepend=Y \
1641 && makemodel $dir/$builddir && make=Y
1642 else
1643 genmakemodel $dir/$builddir && genmake=Y \
1644 && makeclean $dir/$builddir \
1645 && symlink_mpifiles $dir $code_dir $builddir \
1646 && makedependmodel $dir/$builddir && makedepend=Y \
1647 && makemodel $dir/$builddir && make=Y \
1648 && run_clean $dir/$rundir \
1649 && linkdata $dir/$rundir $inputdir \
1650 && runmodel $dir/$rundir && run=Y \
1651 && results=`testoutput_run $dir $rundir $ref_outp`
1652 fi
1653 #echo "results='$results'"
1654
1655 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1656 echo 1>&2
1657 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1658 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1659
1660 for ex in $extra_runs ; do
1661 unset run
1662 results=$EMPTY_RESULTS
1663 # reference output file
1664 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1665 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1666 locDIR=$DRESULTS"/"$dir"."$ex
1667 mkdir $locDIR
1668 #- report to this experiment local summary file ---
1669 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1670 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1671 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1672 CDIR=`pwd`"/$locDIR"
1673 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1674 run_clean $dir/$pfxdir.$ex
1675 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1676 runmodel $dir/$pfxdir.$ex && run=Y \
1677 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1678 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1679 echo 1>&2
1680 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1681 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1682 if test "x$POSTCLEAN" = x2 ; then
1683 run_clean $dir/$pfxdir.$ex
1684 fi
1685 done
1686
1687 if test ! -f $DRESULTS"/"genmake_state ; then
1688 if test -f $dir/$builddir/Makefile ; then
1689 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1690 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1691 # sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1692 # bsd-sed cannot do the above code
1693 cat $dir/$builddir/Makefile | \
1694 sed -n '/^# executed by:/{N
1695 p
1696 }' >> $DRESULTS/genmake_state
1697 echo " $mkOpt" >> $DRESULTS/genmake_state
1698 if test "x$OPTFILE" = xNONE ; then
1699 eval $mkOpt
1700 # sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1701 # $SUMMARY > tmp.tr_log
1702 # bsd-sed requires a newline after "a\":
1703 sed "/^No \"OPTFILE\" was specified ; genmake2/a\\
1704 OPTFILE=${OPTFILE}" $SUMMARY > tmp.tr_log
1705 RETVAL=$?
1706 if test "x$RETVAL" = x0 ; then
1707 cp -f tmp.tr_log $SUMMARY
1708 fi
1709 rm -f tmp.tr_log
1710 fi
1711 gmkLog=$dir/$builddir/genmake.log
1712 if test -r $gmkLog ; then
1713 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1714 RETVAL=$?
1715 if test "x$RETVAL" = x0 ; then
1716 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1717 echo "extract compiler version:" >> $DRESULTS/genmake_state
1718 sed -n '/Get compiler version/,/<-- compiler version/p' \
1719 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1720 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1721 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1722 >> $DRESULTS/genmake_state
1723 rm -f tmp.tr_log
1724 fi
1725 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1726 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1727 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1728 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1729 fi
1730 fi
1731 fi
1732 #postclean $dir/$builddir
1733 if test "x$POSTCLEAN" = x2 ; then
1734 makeclean $dir/$builddir \
1735 && run_clean $dir/$rundir
1736 fi
1737 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1738
1739 echo "-------------------------------------------------------------------------------"
1740
1741 done
1742
1743 printf "Start time: " >> $SUMMARY
1744 echo "$start_date" >> $SUMMARY
1745 printf "End time: " >> $SUMMARY
1746 date >> $SUMMARY
1747
1748 # If addresses were supplied and mpack built successfully, then try
1749 # to send email using mpack.
1750 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1751 echo "No results email was sent."
1752 else
1753 if test "x$SENDCMD" != x ; then
1754 if [ $verbose -gt 1 ]; then
1755 echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
1756 fi
1757 tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
1758 && gzip ${SAVDIR}/${DRESULTS}".tar" \
1759 && $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
1760 RETVAL=$?
1761 if test "x$RETVAL" != x0 ; then
1762 echo
1763 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1764 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1765 echo " summary of results from the directory \"$DRESULTS\"."
1766 echo
1767 else
1768 echo
1769 echo "An email containing results was sent to the following addresses:"
1770 echo " \"$ADDRESSES\""
1771 echo
1772 test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
1773 test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
1774 fi
1775 fi
1776 fi
1777
1778 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1779 rm -f tr_cmpnum.c tr_cmpnum
1780 fi
1781
1782 if test "x$CLEANUP" != xt ; then
1783 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1784 if test -e tr_out.txt ; then
1785 mv tr_out.txt tr_out.txt.old
1786 fi
1787 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1788 fi
1789
1790 if test "x$DELDIR" = xt ; then
1791 rm -rf $DRESULTS
1792 fi
1793 echo "======== End of testreport execution ========"

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