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Revision 1.954 - (view) (download) (annotate) - [select for diffs]
Sat Feb 9 16:34:49 2008 UTC (16 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59n
Changes since 1.953: +2 -1 lines
Diff to previous 1.953
checkpoint59n


Revision 1.953 - (view) (download) (annotate) - [select for diffs]
Tue Feb 5 15:49:01 2008 UTC (16 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.952: +8 -1 lines
Diff to previous 1.952
o pkg/diagnostics: for large number of diagnostics, store diagnostic mate
  number in dedicate array "hdiag":
  - new version of S/R DIAGNOSTICS_ADD2LIST : DIAGNOSTICS_ADDTOLIST
    with 1 more argument (mate number); modify old version DIAGNOSTICS_ADD2LIST.
  - many small changes (integer format) for large number of diagnostics
  - start to use DIAGNOSTICS_ADDTOLIST (necessary for diagnostics with
    a counter mate) in pkg diagnostics, ptracers, thsice & aim_v23.


Revision 1.952 - (view) (download) (annotate) - [select for diffs]
Tue Feb 5 13:34:12 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.951: +11 -1 lines
Diff to previous 1.951
 add parameter rotateGrid and Euler angles EulerPhi/Theta/Psi. For
 usingSphericalGrid, this allows to define the rotated grid coordinates
 via phiMin/thetaMin/dxSpacing/dySpacing, etc., but then re-compute the
 geographical coordinates according to the inverse of the rotation defined
 by the Euler angles, so that Coriolis parameter and online-interpolation by
 exf works with the geographical coordinates on XC/YC/XG/YG.

 The three Euler angles PhiEuler, ThetaEuler, and PsiEuler
 define the rotation about the original z-axis (of an sphere
 centered cartesian grid), the new x-axis, and the new z-axis,
 respectively.
 Naturally, this feature does not work with all packages, so the
 some combinations are prohibited in config_summary (flt,
 flt_zonal, ecco, profiles), because there the coordinates are
 assumed to be regular spherical grid coordinates.


Revision 1.951 - (view) (download) (annotate) - [select for diffs]
Sat Feb 2 02:41:43 2008 UTC (16 years, 1 month ago) by gforget
Branch: MAIN
Changes since 1.950: +5 -1 lines
Diff to previous 1.950
*** empty log message ***


Revision 1.950 - (view) (download) (annotate) - [select for diffs]
Fri Feb 1 11:06:33 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.949: +3 -1 lines
Diff to previous 1.949
have mnc create marginally meaning full coordinate variables if
usingCurvilinearGrid and NOT EXCH2 (that is the grid indices)


Revision 1.949 - (view) (download) (annotate) - [select for diffs]
Thu Jan 31 09:58:41 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.948: +3 -1 lines
Diff to previous 1.948
add a verification experiment that tests useEXFyearlyFields with
USE_EXF_INTERPOLATION defined


Revision 1.948 - (view) (download) (annotate) - [select for diffs]
Sun Jan 27 22:55:34 2008 UTC (16 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.947: +4 -1 lines
Diff to previous 1.947
o pkg/mypackage:
  - add example of read/write pickup for state-var ;
  - add entry points to the main code for state-vars diags & write-pickup.


Revision 1.947 - (view) (download) (annotate) - [select for diffs]
Fri Jan 25 16:03:06 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.946: +3 -1 lines
Diff to previous 1.946
  - add new subroutine that determines the file to read from for
    use*YearlyFields = .TRUE. and .FALSE.


Revision 1.946 - (view) (download) (annotate) - [select for diffs]
Fri Jan 25 11:23:06 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.945: +3 -1 lines
Diff to previous 1.945
o pkg/exf: rewrite of exf_getffieldrec.F to properly deal with year
  transitions for useExfYearlyFields


Revision 1.945 - (view) (download) (annotate) - [select for diffs]
Thu Jan 24 18:41:16 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.944: +6 -1 lines
Diff to previous 1.944
o pkg/obcs/exf: add useOBCSYearlyFields (=.FALSE.) to obcs with exf in
  analogy to useExfYearlyFields; rearrange obcs_prescribe_read: two new
  subroutines (which could be generated from a template, because they are
  almost identical) to save a few lines of code and may make it easier to
  change this bit; for now they are included in obcs_prescribe_read.F for
  simplicity


Revision 1.944 - (view) (download) (annotate) - [select for diffs]
Thu Jan 24 08:30:07 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.943: +4 -2 lines
Diff to previous 1.943
o finish vectorization of exf_interp for TARGET_NEC_SX
  by unrolling short inner k-loops by hand (arghhh!)


Revision 1.943 - (view) (download) (annotate) - [select for diffs]
Wed Jan 23 16:41:21 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.942: +6 -1 lines
Diff to previous 1.942
o pkg/exf:
  - add a little more diagnostic to exf_interp_read (in analogy to
    mds_read_field, can be turned off with debugLevel < debugLevA=1)
  - improve vectorizability of exf_interp for TARGET_NEC_SX, makes code
    ugly but fast (vectorization is not yet complete)


Revision 1.942 - (view) (download) (annotate) - [select for diffs]
Fri Jan 18 01:38:33 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.941: +2 -1 lines
Diff to previous 1.941
o pkg/obcs: replace obcs_apply_area/heff/hsalt/hsnow with obcs_apply_seaice


Revision 1.941 - (view) (download) (annotate) - [select for diffs]
Thu Jan 17 22:33:07 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.940: +3 -1 lines
Diff to previous 1.940
o pkg/seaice: moved DIFFERENT_MULTIPLE from seaice_model to seaice_dynsolver
  http://forge.csail.mit.edu/pipermail/mitgcm-devel/2008-January/003173.html


Revision 1.940 - (view) (download) (annotate) - [select for diffs]
Thu Jan 17 20:48:07 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.939: +2 -1 lines
Diff to previous 1.939
o verification/seaice_obcs: updated for restart test and latest options


Revision 1.939 - (view) (download) (annotate) - [select for diffs]
Wed Jan 16 09:48:41 2008 UTC (16 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.938: +6 -1 lines
Diff to previous 1.938
  add a new flag SEAICEuseTEM to use a slightly different
  ice rheology (so-called truncated ellipse, that gets rid of tensile stress);
  for now this is only available for the C-grid code and also within
  #ifdef SEAICE_ALLOW_TEM, because this option may slow down the EVP code
  default is to not use it.


Revision 1.938 - (view) (download) (annotate) - [select for diffs]
Mon Jan 14 02:29:20 2008 UTC (16 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59m
Changes since 1.937: +2 -1 lines
Diff to previous 1.937
tag "checkpoint59m" (before the next "DocFest" or the next snow-storm ?)


Revision 1.937 - (view) (download) (annotate) - [select for diffs]
Sun Jan 13 05:35:54 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.936: +3 -1 lines
Diff to previous 1.936
reinserted comment that was accidentally deleted.


Revision 1.936 - (view) (download) (annotate) - [select for diffs]
Fri Jan 11 19:59:28 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.935: +3 -5 lines
Diff to previous 1.935
o pkg/seaice: use different time constant for melting (SEAICE_gamma_t)
  and freezing (SEAICE_gamma_t_frz) ice due to mixed layer temperature


Revision 1.935 - (view) (download) (annotate) - [select for diffs]
Thu Jan 10 23:32:15 2008 UTC (16 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.934: +3 -1 lines
Diff to previous 1.934
o pkg/seaice/seaice_growth.F: use a different time constant for freezing
  ice due to supercooled sea water, hardwired to SEAICE_deltaTtherm/0.1


Revision 1.934 - (view) (download) (annotate) - [select for diffs]
Tue Jan 8 23:33:59 2008 UTC (16 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.933: +3 -1 lines
Diff to previous 1.933
o gad_som : fix flux output (& diagnostics) to have same units as other
  advection scheme fluxes (was previously multiplied by deltaT).


Revision 1.933 - (view) (download) (annotate) - [select for diffs]
Tue Jan 8 10:39:30 2008 UTC (16 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.932: +4 -2 lines
Diff to previous 1.932
o added verification/seaice_obcs both to test seaice open boundaries
  and to provide an example matlab scrpt for generating them


Revision 1.932 - (view) (download) (annotate) - [select for diffs]
Sat Dec 22 17:44:49 2007 UTC (16 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.931: +2 -1 lines
Diff to previous 1.931
o added verification/lab_sea/input.salt_plume


Revision 1.931 - (view) (download) (annotate) - [select for diffs]
Fri Dec 21 22:49:09 2007 UTC (16 years, 2 months ago) by atn
Branch: MAIN
Changes since 1.930: +3 -1 lines
Diff to previous 1.930
o pkg/salt_plume: clean up salt_plume_frac.F


Revision 1.930 - (view) (download) (annotate) - [select for diffs]
Fri Dec 21 02:54:34 2007 UTC (16 years, 2 months ago) by atn
Branch: MAIN
Changes since 1.929: +2 -1 lines
Diff to previous 1.929
o pkg/kpp: added saltplume diagnostics


Revision 1.929 - (view) (download) (annotate) - [select for diffs]
Fri Dec 21 01:40:28 2007 UTC (16 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.928: +5 -1 lines
Diff to previous 1.928
o pkg/obcs and pkg/seaice:
  - do not set uice and vice to zero when OB*icefile are unspecified
  - OBCS_SEAICE_AVOID_CONVERGENCE is undefined by default
  - moved seaice tracer obcs after call to seaice_growth


Revision 1.928 - (view) (download) (annotate) - [select for diffs]
Tue Dec 18 16:19:53 2007 UTC (16 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.927: +3 -2 lines
Diff to previous 1.927
tag checkpoint59l was done before changes in pkg/salt_plume


Revision 1.927 - (view) (download) (annotate) - [select for diffs]
Tue Dec 18 05:34:41 2007 UTC (16 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.926: +3 -1 lines
Diff to previous 1.926
o pkg/salt_plume: added various options for salt plume depth
  criterion and for vertical distribution of the salt


Revision 1.926 - (view) (download) (annotate) - [select for diffs]
Tue Dec 18 02:01:41 2007 UTC (16 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59l
Changes since 1.925: +2 -1 lines
Diff to previous 1.925
checkpoint59l


Revision 1.925 - (view) (download) (annotate) - [select for diffs]
Mon Dec 17 22:06:48 2007 UTC (16 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.924: +5 -2 lines
Diff to previous 1.924
o pkg/ptracers: new version of ptracers pickup:
  read meta file and write only fields which are needed to restart.
  ( same logic as main pickup file ; also using pickupStrictlyMatch )


Revision 1.924 - (view) (download) (annotate) - [select for diffs]
Fri Dec 14 21:52:01 2007 UTC (16 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.923: +3 -2 lines
Diff to previous 1.923
  - reformulated availHeat in seaice_growth.F to be independent of AREA


Revision 1.923 - (view) (download) (annotate) - [select for diffs]
Thu Dec 6 09:02:24 2007 UTC (16 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.922: +7 -1 lines
Diff to previous 1.922
updating


Revision 1.922 - (view) (download) (annotate) - [select for diffs]
Wed Dec 5 23:57:44 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.921: +3 -3 lines
Diff to previous 1.921
replaced EXF_OPTIONS.h CPP option EXF_SUBTRACT_UVVEL_FROM_UVWIND
with EXF_PARAM.h runtime parameter useRelativeWind


Revision 1.921 - (view) (download) (annotate) - [select for diffs]
Wed Dec 5 16:56:14 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.920: +2 -1 lines
Diff to previous 1.920
o pkg/obcs: added OBCS_SEAICE_AVOID_CONVERGENCE constraint
C     When the prescribed open boundary conditions are incosistent with
C     forcing, for example, six-hourly forcing and daily or monthly sea
C     ice boundary conditions, ice convergence at edges can cause model
C     to blow up.  The above CPP option fixes problem, hence it is
C     turned on by default, but this is at the expense of less accurate
C     boundary conditions.


Revision 1.920 - (view) (download) (annotate) - [select for diffs]
Wed Dec 5 15:37:12 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.919: +5 -3 lines
Diff to previous 1.919
pkg/seaice: removed some unused halos


Revision 1.919 - (view) (download) (annotate) - [select for diffs]
Wed Dec 5 08:17:05 2007 UTC (16 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.918: +3 -1 lines
Diff to previous 1.918
forgot to document my little change: Compiler directive for NEC SX computers


Revision 1.918 - (view) (download) (annotate) - [select for diffs]
Wed Dec 5 07:28:28 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.917: +3 -1 lines
Diff to previous 1.917
o pkg/seaice: removed SEAICE_FFIELDS.h and seaice_get_forcing.F
  seaice forcing fields can now be read only through pkg/exf


Revision 1.917 - (view) (download) (annotate) - [select for diffs]
Tue Dec 4 23:58:16 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.916: +2 -1 lines
Diff to previous 1.916
no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP


Revision 1.916 - (view) (download) (annotate) - [select for diffs]
Mon Dec 3 07:45:27 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.915: +4 -1 lines
Diff to previous 1.915
o pkg/exf: added CPP option EXF_SUBTRACT_UVVEL_FROM_UVWIND for subtracting
  UVEL and VVEL from UWIND and VWIND prior to applying bulk formulae.


Revision 1.915 - (view) (download) (annotate) - [select for diffs]
Fri Nov 30 21:13:20 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59k
Changes since 1.914: +2 -1 lines
Diff to previous 1.914
checkpoint59k


Revision 1.914 - (view) (download) (annotate) - [select for diffs]
Thu Nov 29 16:29:12 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.913: +3 -1 lines
Diff to previous 1.913
o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between
  dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results.


Revision 1.913 - (view) (download) (annotate) - [select for diffs]
Wed Nov 28 16:52:16 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.912: +3 -1 lines
Diff to previous 1.912
o fix un-initialised variable problem (in mom_vecinv & shap_filt):
  all experiments pass when compile with un-initilised var. checking option.


Revision 1.912 - (view) (download) (annotate) - [select for diffs]
Wed Nov 28 00:18:16 2007 UTC (16 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.911: +2 -1 lines
Diff to previous 1.911
added pkg/salt_plume by gathering code, which were previously
spread around various files in model/inc and model/src
results remain numerically identical to before, as a first step
towards adding more options, etc., to this package


Revision 1.911 - (view) (download) (annotate) - [select for diffs]
Sun Nov 25 22:28:30 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.910: +5 -1 lines
Diff to previous 1.910
o script to test restart (for now, in MITgcm_contrib/jmc_script)
o pkg/seaice: new read/write pickup version.
  read meta file and write only fields which are needed to restart.
  ( same logic as main pickup file ; also using pickupStrictlyMatch )


Revision 1.910 - (view) (download) (annotate) - [select for diffs]
Wed Nov 14 16:01:11 2007 UTC (16 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.909: +2 -1 lines
Diff to previous 1.909
updating


Revision 1.909 - (view) (download) (annotate) - [select for diffs]
Tue Nov 13 22:20:29 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.908: +9 -2 lines
Diff to previous 1.908
o lab_sea.hb87: modify the domain & update output.hb87.txt :
o pkg/rw: cleaning-up:
o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing
  a set of consecutive levels in/from a 3-D array.


Revision 1.908 - (view) (download) (annotate) - [select for diffs]
Sat Nov 10 22:17:09 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.907: +5 -1 lines
Diff to previous 1.907
o pkg/ptracers:
  use use a 2 characters string ioLabel to identify tracer (if more than 99 tracers).
  to-do: fix pkg/diagnostics when large number of diagnostics are defined.


Revision 1.907 - (view) (download) (annotate) - [select for diffs]
Fri Nov 9 15:42:54 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59j
Changes since 1.906: +2 -1 lines
Diff to previous 1.906
checkpoint59j


Revision 1.906 - (view) (download) (annotate) - [select for diffs]
Thu Nov 8 23:01:44 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.905: +5 -1 lines
Diff to previous 1.905
o in pkgs: dic, obcs, offline, rbcs:
  standard way to compute coeff. for time interpolation between 2 time reccords
  which retains full precision (& make results less dependent on compiler).
  update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo.


Revision 1.905 - (view) (download) (annotate) - [select for diffs]
Wed Nov 7 11:13:21 2007 UTC (16 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.904: +3 -1 lines
Diff to previous 1.904
updating


Revision 1.904 - (view) (download) (annotate) - [select for diffs]
Mon Nov 5 19:38:59 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.903: +4 -1 lines
Diff to previous 1.903
split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h
 (keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad
  to allow to compile customized code before the update)


Revision 1.903 - (view) (download) (annotate) - [select for diffs]
Mon Nov 5 16:02:31 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.902: +6 -1 lines
Diff to previous 1.902
o cleaning-up:
  - fix CPP instruction syntax in pkg/obcs
  - replace (some) call to MDSIO S/R with call to RW interface S/R ; and
    add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio)
  - fix some threads issue in IO parts.


Revision 1.902 - (view) (download) (annotate) - [select for diffs]
Fri Nov 2 15:50:30 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.901: +6 -4 lines
Diff to previous 1.901
add more comments about EmPmR units changes in coupled set-up


Revision 1.901 - (view) (download) (annotate) - [select for diffs]
Mon Oct 29 20:00:45 2007 UTC (16 years, 4 months ago) by dfer
Branch: MAIN
Changes since 1.900: +4 -1 lines
Diff to previous 1.900
About modifying pkg/dic


Revision 1.900 - (view) (download) (annotate) - [select for diffs]
Sun Oct 28 21:39:40 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.899: +4 -1 lines
Diff to previous 1.899
o pkg/mom_fluxform: special version of momentum advection.


Revision 1.899 - (view) (download) (annotate) - [select for diffs]
Fri Oct 26 02:00:47 2007 UTC (16 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.898: +3 -2 lines
Diff to previous 1.898
Added open boundary conditions capability for seaice UICE, and VICE
UICE and VICE are reset at the edges after calling the solver and
before advection/diffusion.  Needs testing.


Revision 1.898 - (view) (download) (annotate) - [select for diffs]
Tue Oct 23 16:19:50 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.897: +20 -1 lines
Diff to previous 1.897
o new read/write pickup version:
  - for now, only implemented for main (mdsio) pickup file.
  - write out only what is needed to restart; merge pickup_nh , pickup_ph
    and main pickup together.
  - read meta file; read only what is needed to restart; stop if a field
    is missing (if pickupStrictlyMatch=T, = the default) or try to restart
    if it make sense (even if the restart is not perfect).
  - if no meta file, assume that pickup to read corresponds exactly to
    a pickup that would currently be written.
   - read pickup written in the old format (until checkpoint59i) if it
    recognizes an old meta file (no field-list).
  - add a meta file in exp. which starts from a pickup: 2 cases:
    a) minimal meta file (with just file precision) + pickupStrictlyMatch=F
     e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta
    b) a meta file describing the content of the associated pickup file
     e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta
o pkg/mdsio & pkg/rw:
  - new routine to read a meta file ; new set of routine to read
    Multiple-fields file (with meta file).


Revision 1.897 - (view) (download) (annotate) - [select for diffs]
Tue Oct 23 08:25:28 2007 UTC (16 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.896: +3 -1 lines
Diff to previous 1.896
added open boundary conditions capability for seaice HSNOW and HSALT
(code contributed by Michael Schodlok)


Revision 1.896 - (view) (download) (annotate) - [select for diffs]
Sun Oct 21 18:56:16 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59i
Changes since 1.895: +2 -1 lines
Diff to previous 1.895
checkpoint59i


Revision 1.895 - (view) (download) (annotate) - [select for diffs]
Fri Oct 19 21:03:09 2007 UTC (16 years, 4 months ago) by heimbach
Branch: MAIN
Changes since 1.894: +8 -1 lines
Diff to previous 1.894
Update


Revision 1.894 - (view) (download) (annotate) - [select for diffs]
Fri Oct 19 20:34:20 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.893: +4 -1 lines
Diff to previous 1.893
o pkg/kpp: add "_d 0" to real constant (if missing);
  update output of exp: natl_box (10.digits); vermix (std, 7.digits)
  and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits).


Revision 1.893 - (view) (download) (annotate) - [select for diffs]
Fri Oct 19 19:10:24 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.892: +6 -1 lines
Diff to previous 1.892
o prepare for "clever pickup" implementation: add new header file "RESTART.h"
  for internal parameters related to restart process (formerly from PARAMS.h)
  and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2.
o more standard interface to {PKG}_WRITE_PICKUP with pickup suffix passed
  as argument. (only atm2d & obcs write_pickup have not yet been updated)


Revision 1.892 - (view) (download) (annotate) - [select for diffs]
Mon Oct 15 00:30:04 2007 UTC (16 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.891: +6 -2 lines
Diff to previous 1.891
o pkg/monitor:
  - use GLOBAL_SUM_TILE instead of _GLOBAL_SUM
  - fix mon_stats_rs (statistics over the full domain, even where field is zero)
  - account for deep Atmosphere factor and density factor (anelastic)


Revision 1.891 - (view) (download) (annotate) - [select for diffs]
Thu Oct 11 10:30:34 2007 UTC (16 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.890: +3 -2 lines
Diff to previous 1.890
o Added open boundary conditions capability for seaice HEFF and AREA
For time being this capability requires pkg/exf, pkg/obcs, and pkg/seaice
UICE and VICE are masked at the southern and western open boundaries, if
any, of the domain.  Eventually needs to be extended to SALT and SNOW.


Revision 1.890 - (view) (download) (annotate) - [select for diffs]
Wed Oct 10 12:25:20 2007 UTC (16 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.889: +8 -2 lines
Diff to previous 1.889
updating


Revision 1.889 - (view) (download) (annotate) - [select for diffs]
Tue Oct 9 02:43:45 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.888: +2 -1 lines
Diff to previous 1.888
o add missing cvs $Header:$ or $Name:$ in eesupp/*, pkg/* & verification/code*


Revision 1.888 - (view) (download) (annotate) - [select for diffs]
Fri Oct 5 10:54:31 2007 UTC (16 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.887: +2 -1 lines
Diff to previous 1.887
document recent changes


Revision 1.887 - (view) (download) (annotate) - [select for diffs]
Wed Oct 3 19:42:16 2007 UTC (16 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.886: +4 -1 lines
Diff to previous 1.886
o add new diagnostics to seaice: advective, diffusive fluxes (only for
  multidim-advection, for scheme 2 they are not filled) and transports,
  thermodynamic growth rates


Revision 1.886 - (view) (download) (annotate) - [select for diffs]
Mon Oct 1 19:30:47 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.885: +8 -1 lines
Diff to previous 1.885
o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but
  leave input file unchanged. Affects results @ truncation level (cg2d match)
   and update output of experiments: lab_sea(6), global_ocean.90x40x15(10),
   global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11)
  + adjoint results: global_ocean_ebm(11) and lab_sea (12).
  Next: will retire convertEmP2rUnit (simply using mass2rUnit instead).


Revision 1.885 - (view) (download) (annotate) - [select for diffs]
Sat Sep 29 21:37:19 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59h
Changes since 1.884: +2 -1 lines
Diff to previous 1.884
checkpoint59h


Revision 1.884 - (view) (download) (annotate) - [select for diffs]
Fri Sep 28 07:46:13 2007 UTC (16 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.883: +5 -2 lines
Diff to previous 1.883
update


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Thu Sep 27 14:42:59 2007 UTC (16 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.882: +4 -2 lines
Diff to previous 1.882
Added comments, which describe the changes made in kpp_calc_diff_s & _t.F on
April 23, 2007.  These routines no longer update the vertical
diffusivity array (passed as argument) but are (re-) setting those
arrays.  Also changed order GMREDI_CALC_DIFF & KPP_CALC_DIFF_T in
calc_diffusivity.F and ptracers_calc_diff.F since now the order matters.


Revision 1.882 - (view) (download) (annotate) - [select for diffs]
Thu Sep 27 09:42:27 2007 UTC (16 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.881: +2 -1 lines
Diff to previous 1.881
improve vectorization by moving if-statement out of loops


Revision 1.881 - (view) (download) (annotate) - [select for diffs]
Sat Sep 22 17:55:31 2007 UTC (16 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.880: +2 -1 lines
Diff to previous 1.880
added the salt plume scheme (ALLOW_SALT_PLUME) to pkg/kpp
(code conttributed by An Nguyen)


Revision 1.880 - (view) (download) (annotate) - [select for diffs]
Fri Sep 21 21:37:11 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.879: +5 -1 lines
Diff to previous 1.879
o testreport:
  - allow to test for Qnet & SeaIce monitor output; clean-up ALLOW_BULK_OFFLINE
    monitor & update offline_exf_seaice exp. output.
  - AD testing: pass/FAIL according to Grad. output accuracy (instead of Cost)


Revision 1.879 - (view) (download) (annotate) - [select for diffs]
Wed Sep 19 09:41:50 2007 UTC (16 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.878: +10 -1 lines
Diff to previous 1.878
finally document this:
o pkg/seaice:
  - bug fix in the evp solver: boundary conditions were affected be
    masking of zMax/zMin (changes results)
  - minor bug fix in boundary conditions in seaice_calc_strainrates
    (changes results for no_slip)
  - seaice_lsr.F: make interpolation of eta dependent on boundaries
  - replace hardcoded lower limit for zeta (zMin) by runtime parameter
  - add a test to lab_sea, that tests the Hibler and Bryan (1987) ocean
    stress formulation and no-slip boundary conditions


Revision 1.878 - (view) (download) (annotate) - [select for diffs]
Tue Sep 18 21:29:09 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.877: +3 -1 lines
Diff to previous 1.877
o pkg/ptracers: Temporary fix for PTRACERS_useGMRedi & PTRACERS_useKPP
  in gad_calc_rhs.F ; add few safety stops in initialisation phase.


Revision 1.877 - (view) (download) (annotate) - [select for diffs]
Tue Sep 18 21:18:12 2007 UTC (16 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.876: +2 -1 lines
Diff to previous 1.876
A simple HSALT time stepping equation has been checked in.


Revision 1.876 - (view) (download) (annotate) - [select for diffs]
Tue Sep 18 00:12:40 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.875: +8 -1 lines
Diff to previous 1.875
o pkg/thsice: use continuous power-law function for partition of energy


Revision 1.875 - (view) (download) (annotate) - [select for diffs]
Mon Sep 17 23:03:08 2007 UTC (16 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.874: +5 -1 lines
Diff to previous 1.874
replaced maskW with seaiceMaskU and maskS with seaiceMaskV
in seaice_lsr.F; this solves the pkg/seaice-pkg/obcs problem
without requiring DO-IF statements


Revision 1.874 - (view) (download) (annotate) - [select for diffs]
Mon Sep 17 15:28:14 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59g
Changes since 1.873: +2 -1 lines
Diff to previous 1.873
checkpoint59g


Revision 1.873 - (view) (download) (annotate) - [select for diffs]
Mon Sep 17 03:47:07 2007 UTC (16 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.872: +5 -2 lines
Diff to previous 1.872
o adjoint testing: in preparation for changing testreport:
  - output format: cost and grad written on separated lines
  - ad output results in directory "results" (instead of "results_ad")


Revision 1.872 - (view) (download) (annotate) - [select for diffs]
Sat Sep 15 01:38:59 2007 UTC (16 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.871: +2 -1 lines
Diff to previous 1.871
adding ice salinity HSALT as a prognostic variable


Revision 1.871 - (view) (download) (annotate) - [select for diffs]
Fri Sep 14 02:07:37 2007 UTC (16 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.870: +2 -1 lines
Diff to previous 1.870
changes for using pkg/seaice with pkg/obcs


Revision 1.870 - (view) (download) (annotate) - [select for diffs]
Fri Sep 7 22:42:32 2007 UTC (16 years, 6 months ago) by gforget
Branch: MAIN
Changes since 1.869: +2 -1 lines
Diff to previous 1.869
*** empty log message ***


Revision 1.869 - (view) (download) (annotate) - [select for diffs]
Fri Sep 7 01:16:11 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.868: +10 -1 lines
Diff to previous 1.868
changes in testreport


Revision 1.868 - (view) (download) (annotate) - [select for diffs]
Wed Sep 5 01:55:26 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.867: +4 -1 lines
Diff to previous 1.867
o new S/R GLOBAL_SUM_TILE to compute global sum independently of number of
  threads and number of processes (with #define GLOBAL_SUM_SEND_RECV)
  (but still depend on the tile decompostion of the domain).


Revision 1.867 - (view) (download) (annotate) - [select for diffs]
Fri Aug 31 14:06:57 2007 UTC (16 years, 6 months ago) by mlosch
Branch: MAIN
Changes since 1.866: +5 -1 lines
Diff to previous 1.866
docment my little change in obsolete bits of the code


Revision 1.866 - (view) (download) (annotate) - [select for diffs]
Thu Aug 30 21:26:37 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.865: +4 -1 lines
Diff to previous 1.865
pkg/thsice: move common block out of "THSICE_2DYN.h" (removed) to "THSICE_VARS.h"


Revision 1.865 - (view) (download) (annotate) - [select for diffs]
Mon Aug 27 22:21:37 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.864: +7 -1 lines
Diff to previous 1.864
o pkg/thsice:
 - fix reshaping of sea-ice just after advection:
   melt all the ice only if ice-volume is too small.
 - re-visit lateral/thinning repartition of melting (modifs from May 04, 2007):
   prevent lateral melting if sea-ice fraction is too close to iceMaskMin ;
 and update experiment global_ocean.cs32x15.icedyn (+start from pickup files).


Revision 1.864 - (view) (download) (annotate) - [select for diffs]
Thu Aug 23 22:43:47 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.863: +3 -1 lines
Diff to previous 1.863
o external_forcing_surf : extend the use of salt_EvPrRn & temp_EvPrRn (fresh-water
  tracer content) to linFS or no RealFreshWaterFlux ; default remains unchanged.


Revision 1.863 - (view) (download) (annotate) - [select for diffs]
Thu Aug 23 19:37:08 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.862: +12 -1 lines
Diff to previous 1.862
o define mass2rUnit & rUnit2mass as units conversion factor (surface forcing)
o pkg/cd_code: add brackets in multiple terms sum (S/R CD_CODE_SCHEME):


Revision 1.862 - (view) (download) (annotate) - [select for diffs]
Tue Aug 21 14:39:43 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59f
Changes since 1.861: +4 -1 lines
Diff to previous 1.861
checkpoint59f


Revision 1.861 - (view) (download) (annotate) - [select for diffs]
Mon Aug 20 17:44:38 2007 UTC (16 years, 6 months ago) by gforget
Branch: MAIN
Changes since 1.860: +4 -1 lines
Diff to previous 1.860
*** empty log message ***


Revision 1.860 - (view) (download) (annotate) - [select for diffs]
Fri Aug 17 21:39:33 2007 UTC (16 years, 6 months ago) by gforget
Branch: MAIN
Changes since 1.859: +3 -1 lines
Diff to previous 1.859
*** empty log message ***


Revision 1.859 - (view) (download) (annotate) - [select for diffs]
Fri Aug 17 20:51:27 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.858: +4 -1 lines
Diff to previous 1.858
o add few EXCH S/R (UV_BGRID, UV_DGRID, SM) for B & D-Grid velocity & 2nd Moment Sxy.
o pkg/cd_code: use the right EXCH calls (for CS-grid); but problem remains
   at face corners.


Revision 1.858 - (view) (download) (annotate) - [select for diffs]
Thu Aug 16 02:34:16 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.857: +7 -1 lines
Diff to previous 1.857
o pkg/generic_advdiff:
 - define loop range indices for computing vertical advection tendency
  as parameters (iMinAdvR,iMaxAdvR,jMinAdvR,jMaxAdvR), in GAD.h
  and do the calculation in the interior (no overlap) only ;
  for now, only implemented for SOM advection (to save CPU time)
 - add argument "withSigns" to S/R FILL_CS_CORNER_TR_RL (needed for SOM_xy moment)


Revision 1.857 - (view) (download) (annotate) - [select for diffs]
Mon Aug 6 21:44:50 2007 UTC (16 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.856: +3 -1 lines
Diff to previous 1.856
o pkg/bulk_force: fix loading into Qsw of Short-Wave flux; and update
   output of global_ocean.cs32x15.thsice .


Revision 1.856 - (view) (download) (annotate) - [select for diffs]
Mon Aug 6 19:36:53 2007 UTC (16 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.855: +3 -1 lines
Diff to previous 1.855
Close southern and western boundaries for UICE/VICE when useOBCS=.TRUE.


Revision 1.855 - (view) (download) (annotate) - [select for diffs]
Fri Jul 27 22:22:37 2007 UTC (16 years, 7 months ago) by heimbach
Branch: MAIN
Changes since 1.854: +11 -1 lines
Diff to previous 1.854
Updating for exch2 adjoint


Revision 1.854 - (view) (download) (annotate) - [select for diffs]
Thu Jul 26 16:30:48 2007 UTC (16 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59e
Changes since 1.853: +2 -1 lines
Diff to previous 1.853
checkpoint59e


Revision 1.853 - (view) (download) (annotate) - [select for diffs]
Wed Jul 25 21:23:29 2007 UTC (16 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.852: +4 -1 lines
Diff to previous 1.852
o exch2: new S/R that only use the cube-tracer (center-position) exchange:
  for B-grid vector (not yet tested) and C-grid vector (<- only used
  when option W2_USE_R1_ONLY in W2_OPTIONS.h is defined).


Revision 1.852 - (view) (download) (annotate) - [select for diffs]
Sun Jul 22 23:51:15 2007 UTC (16 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.851: +3 -1 lines
Diff to previous 1.851
o starting implementation of Duffy et al. (GRL 1999) salt plume scheme
  (#ifdef ALLOW_SALT_PLUME)


Revision 1.851 - (view) (download) (annotate) - [select for diffs]
Thu Jul 19 15:34:50 2007 UTC (16 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.850: +2 -1 lines
Diff to previous 1.850
o gather_2d/scatter_2d: removed halo regions
This means that the overlap regions need to be initialized and/or exchanged
"outside" of these two routines as has generally been the case since revision
1.6 of scatter_2d.F


Revision 1.850 - (view) (download) (annotate) - [select for diffs]
Wed Jul 18 22:53:34 2007 UTC (16 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.849: +2 -1 lines
Diff to previous 1.849
applied OBCS T/S mask to HEFFM sea ice mask
This fixes pkg/seaice OBCS problem but in my
opinion this information should eventually be transferred
to the GRID.h arrays: hFacC, maskC, etc.


Revision 1.849 - (view) (download) (annotate) - [select for diffs]
Wed Jul 18 22:26:05 2007 UTC (16 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.848: +3 -1 lines
Diff to previous 1.848
  * commented out cap of HICE: it helps keep ice thinner
  * reintroduced cap of HEFF via MAX_HEFF and SEAICE_CAP_HEFF option


Revision 1.848 - (view) (download) (annotate) - [select for diffs]
Fri Jul 6 02:37:34 2007 UTC (16 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.847: +11 -7 lines
Diff to previous 1.847
  * replaced dRf(1) with dRf(kSurface)*hFacC(kSurface) in seaice_growth.F
  * added SEAICE_availHeatFrac, which specifies fraction of surface level
    heat content used to melt or grow ice (this is a placeholder until
    Ian checks in code meant to reduce adjoint sensitivities).


Revision 1.847 - (view) (download) (annotate) - [select for diffs]
Thu Jun 28 00:35:07 2007 UTC (16 years, 8 months ago) by heimbach
Branch: MAIN
Changes since 1.846: +3 -1 lines
Diff to previous 1.846
maybe GM/Redi adjoint is now broken


Revision 1.846 - (view) (download) (annotate) - [select for diffs]
Fri Jun 22 06:41:09 2007 UTC (16 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.845: +7 -1 lines
Diff to previous 1.845
o pkg/seaice: added computation of saltFlux in seaice_growth;
   For time being, sea ice salinity is assumed constant
   contribution of snow flooding to freshening of sea ice is neglected.
   SEAICE_salinity is set in SEAICE_PARM01 of data.seaice and it
   defaults to 0.0 in order to maintain backward compatibility.
   Typical values for SEAICE_salinity are 4 to 10 g/kg.


Revision 1.845 - (view) (download) (annotate) - [select for diffs]
Thu Jun 21 18:34:24 2007 UTC (16 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.844: +4 -1 lines
Diff to previous 1.844
o gmredi: add option (GM_taper_scheme='fm07') for Ferrari & McWilliams 2007
  scheme and the corresponding test case (under front_relax dir). For now,
  only available with Skew-flux form and not yet tested in realistic set-up.


Revision 1.844 - (view) (download) (annotate) - [select for diffs]
Thu Jun 21 04:16:36 2007 UTC (16 years, 8 months ago) by heimbach
Branch: MAIN
Changes since 1.843: +6 -1 lines
Diff to previous 1.843
Updating.


Revision 1.843 - (view) (download) (annotate) - [select for diffs]
Thu Jun 21 00:56:25 2007 UTC (16 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59d
Changes since 1.842: +2 -1 lines
Diff to previous 1.842
checkpoint59d


Revision 1.842 - (view) (download) (annotate) - [select for diffs]
Thu Jun 21 00:53:20 2007 UTC (16 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.841: +9 -2 lines
Diff to previous 1.841
o standard name: {PKG}_DIAGNOSTICS_STATE to fill diagnostics array
 for {PKG} state variables, and called from DO_STATEVARS_DIAGS.
 (keep {PKG}_DIAGNOSTICS_FILL for non-state variables diagnostics)
o pkg/gmredi (gmredi_readparms.F): add some missing "_d 0"
 and change default value of parameter "GM_Small_Number";
 update output of exp: lab_sea (x2), cfc_example, global_ocean.90x40x15,
   global_ocean.cs32x15 (x4), global_ocean_ebm, global_with_exf,
   tutorial_global_oce_biogeo, tutorial_global_oce_latlon


Revision 1.841 - (view) (download) (annotate) - [select for diffs]
Wed Jun 20 19:39:04 2007 UTC (16 years, 8 months ago) by gforget
Branch: MAIN
Changes since 1.840: +3 -1 lines
Diff to previous 1.840
*** empty log message ***


Revision 1.840 - (view) (download) (annotate) - [select for diffs]
Wed Jun 20 14:08:22 2007 UTC (16 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.839: +4 -1 lines
Diff to previous 1.839
 - fixed problem with HSNOW initialization to avoid thick snow when AREA
   is initilized with small values - does not change lab_sea results.
 - added HsnowFile initialization capability
Modified Files:
doc/tag-index pkg/seaice/SEAICE_PARAMS.h
pkg/seaice/seaice_init_varia.F pkg/seaice/seaice_readparms.F


Revision 1.839 - (view) (download) (annotate) - [select for diffs]
Tue Jun 19 12:39:54 2007 UTC (16 years, 8 months ago) by mlosch
Branch: MAIN
Changes since 1.838: +9 -1 lines
Diff to previous 1.838
- in dynsolver set zMin = 0. in anology to seaice_dynsolver

change a lot of things at the same time so we can never trace the
changes individually (should not affect the adjoint, as it is
generally not using the LSR solver, right?)
 - fix bug in metric terms of u-equation in LSR solver (implicit part),
   changes verification/lab_sea
 - rearrange implicit part of u-equation in LSR solver to make it easier to
   read, understand, and debug. This causes changes at the truncation level.
 - fix (serious) bug in the boundary conditions (sign error in the implicit
   part) of the LSR solver. Changes all LSR results


Revision 1.838 - (view) (download) (annotate) - [select for diffs]
Tue Jun 19 03:44:19 2007 UTC (16 years, 8 months ago) by gforget
Branch: MAIN
Changes since 1.837: +3 -1 lines
Diff to previous 1.837
pkg/smooth related calls


Revision 1.837 - (view) (download) (annotate) - [select for diffs]
Sun Jun 17 09:22:06 2007 UTC (16 years, 8 months ago) by mlosch
Branch: MAIN
Changes since 1.836: +2 -1 lines
Diff to previous 1.836
updating


Revision 1.836 - (view) (download) (annotate) - [select for diffs]
Fri Jun 15 20:49:59 2007 UTC (16 years, 8 months ago) by gforget
Branch: MAIN
Changes since 1.835: +2 -1 lines
Diff to previous 1.835
dependencies: pkg/profiles requires pkg/cal


Revision 1.835 - (view) (download) (annotate) - [select for diffs]
Fri Jun 15 05:09:24 2007 UTC (16 years, 8 months ago) by gforget
Branch: MAIN
Changes since 1.834: +11 -1 lines
Diff to previous 1.834
pkg/profiles upgrade


Revision 1.834 - (view) (download) (annotate) - [select for diffs]
Tue Jun 12 16:04:45 2007 UTC (16 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.833: +2 -1 lines
Diff to previous 1.833
o additional test (in global_ocean.cs32x15) using seaice+thsice pkgs.


Revision 1.833 - (view) (download) (annotate) - [select for diffs]
Thu Jun 7 14:02:06 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.832: +3 -1 lines
Diff to previous 1.832
updating


Revision 1.832 - (view) (download) (annotate) - [select for diffs]
Wed Jun 6 14:37:14 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.831: +3 -1 lines
Diff to previous 1.831
updating


Revision 1.831 - (view) (download) (annotate) - [select for diffs]
Tue Jun 5 16:01:45 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.830: +2 -1 lines
Diff to previous 1.830
updating


Revision 1.830 - (view) (download) (annotate) - [select for diffs]
Tue Jun 5 10:46:27 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.829: +6 -1 lines
Diff to previous 1.829
updating


Revision 1.829 - (view) (download) (annotate) - [select for diffs]
Mon Jun 4 00:51:28 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59c
Changes since 1.828: +2 -1 lines
Diff to previous 1.828
checkpoint59c


Revision 1.828 - (view) (download) (annotate) - [select for diffs]
Sun Jun 3 23:32:28 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.827: +9 -3 lines
Diff to previous 1.827
o add S/R and diagnostics for oceanic mixed-layer depth
o move GMRedi call after all vertical mixing schemes (including KPP)
o pkg/thsice:
 - ensure iceMask > iceMaskMin : this problem appeared after May-04 modifs
  (melt only laterally if thin ice): update output of global_ocean.cs32x15.thsice


Revision 1.827 - (view) (download) (annotate) - [select for diffs]
Fri Jun 1 23:31:38 2007 UTC (16 years, 9 months ago) by heimbach
Branch: MAIN
Changes since 1.826: +6 -1 lines
Diff to previous 1.826
Re-organized adjoint checkpointing according to Matt Mazloff
(but with modifs/completions/cleanups)
Storing is now bundled into large arrays to optimized I/O
(and second step in cleanup of the_main_loop)


Revision 1.826 - (view) (download) (annotate) - [select for diffs]
Fri Jun 1 12:57:48 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.825: +4 -2 lines
Diff to previous 1.825
updating


Revision 1.825 - (view) (download) (annotate) - [select for diffs]
Wed May 30 10:56:27 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.824: +4 -3 lines
Diff to previous 1.824
updating


Revision 1.824 - (view) (download) (annotate) - [select for diffs]
Wed May 30 09:27:05 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.823: +3 -1 lines
Diff to previous 1.823
updating


Revision 1.823 - (view) (download) (annotate) - [select for diffs]
Fri May 25 14:52:27 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.822: +3 -4 lines
Diff to previous 1.822
  - add code for no slip boundary conditions for lsr
  - fix the free slip code for lsr


Revision 1.822 - (view) (download) (annotate) - [select for diffs]
Fri May 25 12:53:44 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.821: +7 -1 lines
Diff to previous 1.821
updating


Revision 1.821 - (view) (download) (annotate) - [select for diffs]
Thu May 24 23:10:12 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.820: +8 -1 lines
Diff to previous 1.820
o change calculation of Visbeck K:
  - no longer depend on tapering scheme; instead, compute slope (limited
     by GM_maxSlope). this is equivalent to what was comuted before with
    clipping or linear tappering.
  - fix vertical averaging (wrong by 1 level)
  - leave the old version (but will not be maintained) within
    #ifdef OLD_VISBECK_CALC / #endif


Revision 1.820 - (view) (download) (annotate) - [select for diffs]
Tue May 22 11:34:32 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.819: +2 -1 lines
Diff to previous 1.819
updating


Revision 1.819 - (view) (download) (annotate) - [select for diffs]
Fri May 18 03:02:47 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.818: +4 -1 lines
Diff to previous 1.818
o exf runoff and seaice: remove ALLOW_SEAICE from exf pkg files and
  add #define ALLOW_RUNOFF in SEAICE_OPTIONS.h (when not using exf)


Revision 1.818 - (view) (download) (annotate) - [select for diffs]
Wed May 16 13:39:57 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59b
Changes since 1.817: +4 -1 lines
Diff to previous 1.817
checkpoint59b


Revision 1.817 - (view) (download) (annotate) - [select for diffs]
Tue May 15 14:34:44 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.816: +8 -1 lines
Diff to previous 1.816
updating


Revision 1.816 - (view) (download) (annotate) - [select for diffs]
Mon May 14 21:30:56 2007 UTC (16 years, 9 months ago) by dfer
Branch: MAIN
Changes since 1.815: +3 -1 lines
Diff to previous 1.815
o Refresh of tutorial_global_oce_latlon (includes changing salinity-like
  passive tracer to an Age Tracer) + update output.txt


Revision 1.815 - (view) (download) (annotate) - [select for diffs]
Mon May 14 20:44:45 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.814: +11 -1 lines
Diff to previous 1.814
o pkg/exf:
  - implement A-grid / C-grid selection for wind-stress input files.
  - clean-up exf_wind.F (remove us, use wspeed instead ; add wStress)
  for now, in exf_bulk_largeyeager04.F only :
  - change implementation for case where windspeed + 2. components wind-stress
    are read-in. AND use rhoConstFresh to convert evap.
o pkg/seaice:
  - use correct EXCH_UV for wind-forcing (on A-grid).
  - change SEAICE_OPTIONS.h to limit the number of option combinations (regarding
    SEAICE_EXTERNAL_FORCING & SEAICE_EXTERNAL_FLUXES); add corresponding stops.


Revision 1.814 - (view) (download) (annotate) - [select for diffs]
Fri May 11 14:32:32 2007 UTC (16 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.813: +11 -1 lines
Diff to previous 1.813
o pkg/exf:
  - default EXF options are now set in EXF_OPTIONS.h (ifndef ALLOW_AUTODIFF_TAMC)
  EXF_INTERPOLATION:
  - merge global_with_exf/code version of exf_interp_read.F
    to the main code ;
  - Add new option: EXF_INTERP_USE_DYNALLOC to use Dynamical Allocation when
    reading the file ; Important: This options needs to be defined to recover
    previous code.
    otherwise, use fixed size array to read in (size=exf_interp_bufferSize).
  - no longer loose real*8 precision along the way when using exf_iprec=64.


Revision 1.813 - (view) (download) (annotate) - [select for diffs]
Thu May 10 20:02:36 2007 UTC (16 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.812: +7 -1 lines
Diff to previous 1.812
updating


Revision 1.812 - (view) (download) (annotate) - [select for diffs]
Thu May 10 16:55:58 2007 UTC (16 years, 9 months ago) by heimbach
Branch: MAIN
Changes since 1.811: +3 -1 lines
Diff to previous 1.811
Update.


Revision 1.811 - (view) (download) (annotate) - [select for diffs]
Wed May 9 14:32:05 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.810: +2 -1 lines
Diff to previous 1.810
o rearrangement of common blocks (really needs more cleaning up)


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Wed May 9 13:00:47 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.809: +12 -2 lines
Diff to previous 1.809
o pkg/exf: some cleaning-up:
  - change various "constants" into runtime parameters
  - cleaned-up Large&Yeager04 routine which should eventually
    replace exf_bulkformulae.F (changed names of S/R and CPP)
    and merged various ALLOW_ATM_WIND options
 only used with thsice pkg (in thsice_get_exf.F):
  - implement fixed turbulent transfert Coeff over ice (as in Large&Yeager04)
    which are used when useStabilityFct_overIce=TRUE (= the default)
  - change default values of ice & snow emissivity and scale downward LW
    by ice & snow emissivity.


Revision 1.809 - (view) (download) (annotate) - [select for diffs]
Fri May 4 21:51:31 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.808: +14 -3 lines
Diff to previous 1.808
o pkg/thsice:
 fix few little problems, in thsice_calc_thickn.F & thsice_extend.F
 update output of test-exp: aim.5l_cs(thSI), global_ocean.cs32x15(thsice),
  and cpl_aim+ocn
o pkg/kpp
 - for now, fix conservation problem by exchanging KPPviscAz (may not
   be the best fix)


Revision 1.808 - (view) (download) (annotate) - [select for diffs]
Thu May 3 22:57:27 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.807: +3 -1 lines
Diff to previous 1.807
 - remove wrong (within bi,bj loops) EXCH calls.
 - little cleaning (add argument myThid in last position, cvs header ...)


Revision 1.807 - (view) (download) (annotate) - [select for diffs]
Thu May 3 14:51:33 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.806: +4 -1 lines
Diff to previous 1.806
 - document moving computation of surface related input fields to KPP
   into a new subroutine kpp_forcing_surf.F


Revision 1.806 - (view) (download) (annotate) - [select for diffs]
Tue May 1 21:41:11 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.805: +5 -1 lines
Diff to previous 1.805
updating


Revision 1.805 - (view) (download) (annotate) - [select for diffs]
Tue May 1 12:29:18 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59a
Changes since 1.804: +2 -1 lines
Diff to previous 1.804
checkpoint59a


Revision 1.804 - (view) (download) (annotate) - [select for diffs]
Tue May 1 04:10:31 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.803: +2 -1 lines
Diff to previous 1.803
updating (mythid in kpp-routines)


Revision 1.803 - (view) (download) (annotate) - [select for diffs]
Mon Apr 30 22:48:52 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.802: +2 -1 lines
Diff to previous 1.802
some parameter clarifications and a little bit of spring cleaning


Revision 1.802 - (view) (download) (annotate) - [select for diffs]
Mon Apr 30 16:03:40 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.801: +11 -1 lines
Diff to previous 1.801
o pkg/thsice: rename run-time parameters:
   himin       -> hIceMin
   himin0      -> hThinIce
   hihig       -> hThickIce
   i0          -> i0swFrac
   transCoef   -> bMeltCoef
   frac_energy -> fracMelting
  add new parameters: hNewIceMax, fracFreezing, dhSnowLin
   with default values (for now) that do not change the results.
  remove old version of thsice vars advection in pkg/seaicer.


Revision 1.801 - (view) (download) (annotate) - [select for diffs]
Fri Apr 27 16:33:53 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.800: +5 -1 lines
Diff to previous 1.800
o in FFIELDS.h:
  - replace #ifndef ALLOW_EXF  by #ifndef EXCLUDE_FFIELDS_LOAD
  - make pLoad & sIceLoad always available (but still only used if
     ATMOSPHERIC_LOADING is #define).


Revision 1.800 - (view) (download) (annotate) - [select for diffs]
Tue Apr 24 11:24:37 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.799: +7 -1 lines
Diff to previous 1.799
updating


Revision 1.799 - (view) (download) (annotate) - [select for diffs]
Mon Apr 23 21:09:19 2007 UTC (16 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.798: +2 -1 lines
Diff to previous 1.798
replaced _KPP_RL with _RL


Revision 1.798 - (view) (download) (annotate) - [select for diffs]
Mon Apr 23 20:46:48 2007 UTC (16 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.797: +3 -1 lines
Diff to previous 1.797
o bug fixes for vertical diffusivity computations when both KPP and
    3D diffusivity arrays are used.


Revision 1.797 - (view) (download) (annotate) - [select for diffs]
Sun Apr 22 23:08:39 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.796: +2 -1 lines
Diff to previous 1.796
updating


Revision 1.796 - (view) (download) (annotate) - [select for diffs]
Sun Apr 22 19:57:13 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.795: +8 -2 lines
Diff to previous 1.795
updating


Revision 1.795 - (view) (download) (annotate) - [select for diffs]
Fri Apr 20 18:30:39 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.794: +6 -1 lines
Diff to previous 1.794
updating


Revision 1.794 - (view) (download) (annotate) - [select for diffs]
Thu Apr 19 15:49:24 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.793: +3 -1 lines
Diff to previous 1.793
updating


Revision 1.793 - (view) (download) (annotate) - [select for diffs]
Thu Apr 19 14:58:37 2007 UTC (16 years, 10 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint59
Changes since 1.792: +10 -1 lines
Diff to previous 1.792
tagging checkpoint59


Revision 1.792 - (view) (download) (annotate) - [select for diffs]
Tue Apr 17 23:49:41 2007 UTC (16 years, 10 months ago) by heimbach
Branch: MAIN
Changes since 1.791: +9 -6 lines
Diff to previous 1.791
2nd set of modifs for thsice adjoint.


Revision 1.791 - (view) (download) (annotate) - [select for diffs]
Tue Apr 17 19:47:17 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.790: +3 -1 lines
Diff to previous 1.790
exf wind-stress: updated


Revision 1.790 - (view) (download) (annotate) - [select for diffs]
Tue Apr 17 16:15:27 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.789: +5 -1 lines
Diff to previous 1.789
updating


Revision 1.789 - (view) (download) (annotate) - [select for diffs]
Mon Apr 16 23:48:40 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.788: +4 -1 lines
Diff to previous 1.788
o pkg/exf:
  move exf header files from lower_case.h to UPPER_CASE.h ;
  add missing cvs Header & Name


Revision 1.788 - (view) (download) (annotate) - [select for diffs]
Mon Apr 16 22:43:12 2007 UTC (16 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.787: +6 -1 lines
Diff to previous 1.787
updating


Revision 1.787 - (view) (download) (annotate) - [select for diffs]
Sun Apr 15 22:04:51 2007 UTC (16 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58y_post
Changes since 1.786: +2 -1 lines
Diff to previous 1.786
checkpoint58y_post


Revision 1.786 - (view) (download) (annotate) - [select for diffs]
Sat Apr 14 18:32:32 2007 UTC (16 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.785: +4 -3 lines
Diff to previous 1.785
latitudinal dependence of Bryan and Lewis, 1979
fixed and reworked as per JM suggestions


Revision 1.785 - (view) (download) (annotate) - [select for diffs]
Wed Apr 11 00:00:47 2007 UTC (16 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.784: +4 -1 lines
Diff to previous 1.784
o Added capability for latitudinal dependence of Bryan and Lewis, 1979
  vertical diffusivity, similar to that in MOM4; vertical diffusivity is
  specified using diffKrBL79* diffKrBLEQ* and KbryanLewisLatTransition


Revision 1.784 - (view) (download) (annotate) - [select for diffs]
Fri Apr 6 15:58:23 2007 UTC (16 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.783: +7 -1 lines
Diff to previous 1.783
o ice dynamics (pkg/seaice) with thsice thermodynamics:
  - add code within pkg thsice to advect & diffuse sea-ice fields
  similar to (and will replace) what has been added in  seaice_advdiff.F,
  but: - conserving Mass, Heat & Salt.
       - better when using non-linear advection scheme (not yet fully tested)
       - can also be used in atmospheric set-up (for now, only the diffusion).


Revision 1.783 - (view) (download) (annotate) - [select for diffs]
Thu Apr 5 22:52:31 2007 UTC (16 years, 11 months ago) by dimitri
Branch: MAIN
Changes since 1.782: +2 -2 lines
Diff to previous 1.782
Modified tag-index


Revision 1.782 - (view) (download) (annotate) - [select for diffs]
Thu Apr 5 22:51:48 2007 UTC (16 years, 11 months ago) by dimitri
Branch: MAIN
Changes since 1.781: +6 -5 lines
Diff to previous 1.781
Modified capability for 3D specification of background vertical diffusion
coefficient as per JM requests.  3D diffusion is now specified by
(i) #define ALLOW_3D_DIFFKR in CPP_OPTIONS.h and
(ii) specifying file diffKrFile in runtime "data" file that contains
     the 3D vertical diffusivity coefficients.


Revision 1.781 - (view) (download) (annotate) - [select for diffs]
Thu Apr 5 00:02:49 2007 UTC (16 years, 11 months ago) by dimitri
Branch: MAIN
Changes since 1.780: +5 -1 lines
Diff to previous 1.780
o Added capability for 3D specification of vertical diffusion coefficient.
  This is done by specifying files diffKr3dSfile and diffKr3dTfile that
  contain the 3D vertical diffusivity coefficients.
Modified files: doc/tag-index model/inc/PARAMS.h
  model/src/calc_3d_diffusivity.F, calc_diffusivity.F, ini_mixing.F,
            ini_parms.F, and set_defaults.F
Added missing file verification/tutorial_global_oce_latlon/run/.cvsignore


Revision 1.780 - (view) (download) (annotate) - [select for diffs]
Wed Apr 4 01:27:57 2007 UTC (16 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58x_post
Changes since 1.779: +2 -1 lines
Diff to previous 1.779
checkpoint58x_post


Revision 1.779 - (view) (download) (annotate) - [select for diffs]
Wed Mar 21 15:31:33 2007 UTC (16 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.778: +6 -1 lines
Diff to previous 1.778
o IO option for global-file compact format:
  - add options when generating topology (utils/exch2/matlab-topology-generator)
  - add I/O capability (pkg/mdsio).
  - adapt utils/matlab/rdmds.m to read this format.
  for now long-line format not yet supported by pkg/mdsio (& exch2).


Revision 1.778 - (view) (download) (annotate) - [select for diffs]
Wed Mar 14 15:44:24 2007 UTC (16 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.777: +3 -1 lines
Diff to previous 1.777
add a few diagnostics


Revision 1.777 - (view) (download) (annotate) - [select for diffs]
Tue Mar 13 22:02:39 2007 UTC (16 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58w_post
Changes since 1.776: +2 -1 lines
Diff to previous 1.776
checkpoint58w_post


Revision 1.776 - (view) (download) (annotate) - [select for diffs]
Tue Mar 13 14:06:22 2007 UTC (16 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.775: +6 -1 lines
Diff to previous 1.775
o p-coord. non-hydrostatic using reference profile for w <-> omega conversion:
  rVel2wUnit & wUnit2rVel are computed from reference profile Tref,Sref
  (and replace horiVertRatio in NH code).
  Update output of exp.: tutorial_global_oce_in_p (useNHMTerms !)
                     and tutorial_plume_on_slope (sensitive to truncation)


Revision 1.775 - (view) (download) (annotate) - [select for diffs]
Thu Mar 8 14:46:12 2007 UTC (17 years ago) by mlosch
Branch: MAIN
Changes since 1.774: +2 -1 lines
Diff to previous 1.774
updating


Revision 1.774 - (view) (download) (annotate) - [select for diffs]
Thu Mar 8 11:22:31 2007 UTC (17 years ago) by mlosch
Branch: MAIN
Changes since 1.773: +8 -1 lines
Diff to previous 1.773
updating recent changes in exf and seaice


Revision 1.773 - (view) (download) (annotate) - [select for diffs]
Wed Feb 21 00:43:39 2007 UTC (17 years ago) by jmc
Branch: MAIN
Changes since 1.772: +4 -1 lines
Diff to previous 1.772
o rdmnc.m : some improvements in dealing with singleton dimension
  (tested on all testreport mnc output files).
o genmake2: disable pkg/profiles if netcdf test fails.


Revision 1.772 - (view) (download) (annotate) - [select for diffs]
Fri Feb 16 00:30:01 2007 UTC (17 years ago) by jmc
Branch: MAIN
Changes since 1.771: +2 -1 lines
Diff to previous 1.771
o cpl_aim+ocn exp.: use consistent rhoConstFresh in Atm & Ocn; update output.


Revision 1.771 - (view) (download) (annotate) - [select for diffs]
Thu Feb 15 14:57:36 2007 UTC (17 years ago) by mlosch
Branch: MAIN
Changes since 1.770: +4 -1 lines
Diff to previous 1.770
move call to cal_readparms up to make calendar parameters/variable available
to all packages


Revision 1.770 - (view) (download) (annotate) - [select for diffs]
Thu Feb 8 00:12:37 2007 UTC (17 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58v_post
Changes since 1.769: +4 -1 lines
Diff to previous 1.769
checkpoint58v_post
o change EOS (from POLY3 to JMD95P) in global_ocean.90x45x15 to get
  useDynP_inEos_Zc tested.


Revision 1.769 - (view) (download) (annotate) - [select for diffs]
Wed Feb 7 17:38:11 2007 UTC (17 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.768: +2 -1 lines
Diff to previous 1.768
pkg/exf: changes to properly interpolate/mask/scale initial fields


Revision 1.768 - (view) (download) (annotate) - [select for diffs]
Tue Feb 6 22:24:51 2007 UTC (17 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.767: +3 -1 lines
Diff to previous 1.767
Modified Files tag-index


Revision 1.767 - (view) (download) (annotate) - [select for diffs]
Tue Feb 6 22:19:51 2007 UTC (17 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.766: +6 -1 lines
Diff to previous 1.766
o utils/matlab/cs_grid/bk_line: to compute transport through passages,
  add a script (grt_circ_bkl.m) to generate broken-line between 2 points,
  following the great-circle arc between those 2 points.
o trap un-initialized variable with pathscale compiler on weddell.mit.edu
  (thanks to Constantinos): fix few problems and get (almost) all exp to pass.


Revision 1.766 - (view) (download) (annotate) - [select for diffs]
Tue Jan 16 19:45:13 2007 UTC (17 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.765: +9 -1 lines
Diff to previous 1.765
o 2nd-Order Moment Advection Scheme (Prather, 1986): first check-in
 - enable by setting #define GAD_ALLOW_SOM_ADVECT (in GAD_OPTIONS.h)
 - used without limiter (AdvScheme=80) or with Prather limiter (AdvScheme=81)
 - still needs work (not working with some options ; efficiency to improve)
   and serious testing.
 - use this scheme for temperature & salinity in 2 advection test exp.:
   advect_xy & advect_xz, respectively.


Revision 1.765 - (view) (download) (annotate) - [select for diffs]
Fri Jan 12 19:18:24 2007 UTC (17 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58u_post
Changes since 1.764: +3 -1 lines
Diff to previous 1.764
checkpoint58u_post
o new test-exp: fizhi-cs-32x32x40 (40 levels) to replace the 10 levels.


Revision 1.764 - (view) (download) (annotate) - [select for diffs]
Thu Jan 11 00:29:41 2007 UTC (17 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.763: +11 -1 lines
Diff to previous 1.763
o move call to INI_FORCING from PACKAGES_INIT_VARIABLES to INITIALISE_VARIA.
o testreport: add option "-skipdir" to skip some tests.
o exf: when input wind-stress (#undef ALLOW_ATM_WIND), by-pass turbulent
  momentum calculation.
o gad_advection: fix vertAdvecScheme (if different from advectionScheme)
o some cleaning: usePickupBeforeC35 no longer supported; remove this option;
  remove checkpoint.F and the_correction_step.F (no longer used);
  do the k loop inside CYCLE_TRACER (supposed to be more efficient).


Revision 1.763 - (view) (download) (annotate) - [select for diffs]
Tue Jan 9 13:36:19 2007 UTC (17 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.762: +5 -2 lines
Diff to previous 1.762
 updating


Revision 1.762 - (view) (download) (annotate) - [select for diffs]
Sat Dec 30 22:15:37 2006 UTC (17 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58t_post
Changes since 1.761: +2 -1 lines
Diff to previous 1.761
checkpoint58t_post (the last one of the year)


Revision 1.761 - (view) (download) (annotate) - [select for diffs]
Sat Dec 30 00:18:09 2006 UTC (17 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.760: +12 -1 lines
Diff to previous 1.760
o pkg/diagnostics: fix multi-threaded output (when singleCpuIO=F)
o pkg/mdsio:
 - clean-up mdsio_readfield.F & mdsio_writefield_new.F and
   move to new files: mdsio_read_field.F (S/R MDS_READ_FIELD) &
   mdsio_write_field.F (S/R MDS_WRITE_FIELD);
 - fix multi-threaded singleCpuIO option in MDS_WRITE_FIELD
 - collect old S/R  in one file: mdsio_rw_field.F (now just a call to
   either MDS_READ_FIELD or MDS_WRITE_FIELD )
 - new S/R (to replace MDSWRITEMETA), which allows to write more
   informations (variable names, time ...) to meta files.
 - modify rdmds.m to give back the meta file content.


Revision 1.760 - (view) (download) (annotate) - [select for diffs]
Sun Dec 24 22:30:57 2006 UTC (17 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.759: +5 -1 lines
Diff to previous 1.759
o pkg/diagnostics: change vertical interpolation to be safer, and more
   flexible (define p-levels to interpolate to in data.diagnostics);
  add argument to S/R DIAGNOSTICS_GET_POINTERS to catch the right
   diagnostic pointer.


Revision 1.759 - (view) (download) (annotate) - [select for diffs]
Thu Dec 21 10:50:56 2006 UTC (17 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.758: +3 -1 lines
Diff to previous 1.758
updating


Revision 1.758 - (view) (download) (annotate) - [select for diffs]
Wed Dec 20 20:47:30 2006 UTC (17 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.757: +4 -1 lines
Diff to previous 1.757
o pkg/seaice: change default (SEAICE_OPTIONS.h): use C-grid dynamics
   and allow to use EVP solver. Change forward lab_sea: test both EVP
   solver and LSR solver, and use C-grid dynamics (like lab_sea adjoint)


Revision 1.757 - (view) (download) (annotate) - [select for diffs]
Wed Dec 20 12:27:02 2006 UTC (17 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.756: +5 -1 lines
Diff to previous 1.756
updating


Revision 1.756 - (view) (download) (annotate) - [select for diffs]
Fri Dec 15 18:58:13 2006 UTC (17 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.755: +10 -1 lines
Diff to previous 1.755
updating


Revision 1.755 - (view) (download) (annotate) - [select for diffs]
Thu Dec 14 08:39:57 2006 UTC (17 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.754: +11 -1 lines
Diff to previous 1.754
updating


Revision 1.754 - (view) (download) (annotate) - [select for diffs]
Thu Dec 14 08:23:13 2006 UTC (17 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.753: +2 -1 lines
Diff to previous 1.753
tagging checkpoint58s_post before changing the thermodynamics of seaice


Revision 1.753 - (view) (download) (annotate) - [select for diffs]
Mon Dec 11 16:19:19 2006 UTC (17 years, 2 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint58s_post
Changes since 1.752: +5 -2 lines
Diff to previous 1.752
o pkg/exf: removed exf_init_runoff.F and placed functionality in
  exf_init.F and exf_set_gen.F; changed exf_set_gen.F so that
    genperiod=0 means input file is one time-constant field and
    genperiod=-12 means input file contains 12 monthly means
Note 1: need to complete ALLOW_RUNOFF_CONTROL in exf_getffields.F
Note 2: exf_set_gen.F now includes functionality of exf_set_climsss.F
        and exf_set_climsst.F, which can evetually be removed


Revision 1.752 - (view) (download) (annotate) - [select for diffs]
Tue Dec 5 22:15:47 2006 UTC (17 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.751: +9 -1 lines
Diff to previous 1.751
o CG2D: use pre-computed solver main-diagonal (stored in common block);
  this affects truncation error ; generate new output file for exp. which
  fails: exp4(12d), fizhi-cs-aqualev20(12d), front_relax(10d),
    global_ocean.90x40x15(10d), global_ocean.cs32x15(10d).thsice(11d).viscA4(10d),
    ideal_2D_oce(10d), internal_wave(09d), isomip.htd(11d), matrix_example(07d),
    MLAdjust(4x11d,12d), natl_box(11d), rotating_tank(12d),
    tutorial_global_oce_in_p(10d), tutorial_plume_on_slope(11d),
    vermix(12d).ggl90(12d).my82(11d).opps(12d).pp81(11d)


Revision 1.751 - (view) (download) (annotate) - [select for diffs]
Tue Dec 5 05:32:59 2006 UTC (17 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.750: +2 -1 lines
Diff to previous 1.750
o start implementation of deep-atmosphere and anelastic formulation


Revision 1.750 - (view) (download) (annotate) - [select for diffs]
Fri Nov 24 00:13:37 2006 UTC (17 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.749: +3 -1 lines
Diff to previous 1.749
o verification: remove 2nd copy of input files and use script "prepare_run"
  to make a symbolic link to the 1rst copy (reduce downloaded size by ~81.M)


Revision 1.749 - (view) (download) (annotate) - [select for diffs]
Thu Nov 23 10:03:44 2006 UTC (17 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.748: +2 -1 lines
Diff to previous 1.748
updating


Revision 1.748 - (view) (download) (annotate) - [select for diffs]
Thu Nov 23 00:06:21 2006 UTC (17 years, 3 months ago) by gforget
Branch: MAIN
Changes since 1.747: +3 -1 lines
Diff to previous 1.747
profiles: fix for multithreaded case


Revision 1.747 - (view) (download) (annotate) - [select for diffs]
Mon Nov 20 20:06:43 2006 UTC (17 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.746: +5 -1 lines
Diff to previous 1.746
o modifications to pkg/seaice/growth.F and budget.F, which change results of
  lab_sea experiment: HSNOW was sometimes treated as effective and sometimes
  as actual snow thickness.  It now refers everywhere to effective snow
  thickness, meaning that for non-zero AREA, actual thickness is HEFF/AREA.


Revision 1.746 - (view) (download) (annotate) - [select for diffs]
Mon Nov 20 05:19:43 2006 UTC (17 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.745: +12 -1 lines
Diff to previous 1.745
rename few diagnostics and add few ocean-forcing diagnostics


Revision 1.745 - (view) (download) (annotate) - [select for diffs]
Fri Nov 17 20:01:26 2006 UTC (17 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58r_post
Changes since 1.744: +3 -1 lines
Diff to previous 1.744
checkpoint58r_post


Revision 1.744 - (view) (download) (annotate) - [select for diffs]
Mon Nov 6 20:37:25 2006 UTC (17 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.743: +5 -1 lines
Diff to previous 1.743
o modifications to pkg/seaice/growth.F, which change results of
  lab_sea experiment: fixes pertain to melting snow over open water, to
  masking EVAP under sea ice, and to using the correct AREA variable for
  computations of EVAP, PRECIP, HSNOW, and GHEFF


Revision 1.743 - (view) (download) (annotate) - [select for diffs]
Sun Nov 5 18:36:05 2006 UTC (17 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.742: +2 -1 lines
Diff to previous 1.742
add ability to read bathy, salt, and theta using MNC (off by def)
  -- and this can be readily extended to most of the other files
  in PARM05 of the main "data" namelist file


Revision 1.742 - (view) (download) (annotate) - [select for diffs]
Wed Nov 1 09:50:43 2006 UTC (17 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.741: +3 -2 lines
Diff to previous 1.741
o add flooding algorithm and advection of HSNOW; both are turned off
  by default and do not fix any of the observed problems.


Revision 1.741 - (view) (download) (annotate) - [select for diffs]
Wed Nov 1 02:01:15 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.740: +3 -1 lines
Diff to previous 1.740
o seaice advection with pkg/thsice: a step toward the use of non-linear
  advection scheme, but #ifdef or commented out for now (requires more EXCH).


Revision 1.740 - (view) (download) (annotate) - [select for diffs]
Fri Oct 27 05:19:42 2006 UTC (17 years, 4 months ago) by heimbach
Branch: MAIN
Changes since 1.739: +3 -1 lines
Diff to previous 1.739
Adding new control variables:
lwflux, lwdown, evap, snowprecip, apressure, runoff.


Revision 1.739 - (view) (download) (annotate) - [select for diffs]
Thu Oct 26 19:11:09 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.738: +5 -2 lines
Diff to previous 1.738
o use standard version of PTRACERS_INI_VARIA in tutorial_tracer_adjsens
  (identical results) and the standard version of EXTERNAL_FIELDS_LOAD
  in natl_box (affects results @ truncation level: update output.txt)


Revision 1.738 - (view) (download) (annotate) - [select for diffs]
Thu Oct 26 00:50:48 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.737: +5 -1 lines
Diff to previous 1.737
o multi-threading and IO:
  - replace some call to MDSIO S/R by the corresponding READ/WRITE_FLD S/R.
  - remove most of BEGIN_MASTER/ END_MASTER around READ/WRITE_FLD S/R calls
    (needed to work with SingleCpuIO): tested in all verif. exp.


Revision 1.737 - (view) (download) (annotate) - [select for diffs]
Sun Oct 22 02:02:07 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.736: +3 -1 lines
Diff to previous 1.736
o GAD: use simpler DST3 formulation as default (old version left within #ifdef)
  affects the results (but none of the verification test uses this scheme).


Revision 1.736 - (view) (download) (annotate) - [select for diffs]
Sun Oct 22 01:26:36 2006 UTC (17 years, 4 months ago) by heimbach
Branch: MAIN
Changes since 1.735: +4 -1 lines
Diff to previous 1.735
Update


Revision 1.735 - (view) (download) (annotate) - [select for diffs]
Fri Oct 20 19:24:08 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58q_post
Changes since 1.734: +3 -1 lines
Diff to previous 1.734
checkpoint58q_post


Revision 1.734 - (view) (download) (annotate) - [select for diffs]
Thu Oct 19 06:54:23 2006 UTC (17 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.733: +4 -2 lines
Diff to previous 1.733
Added CPP_EEOPTIONS.h flag DISABLE_MPI_READY_TO_RECEIVE, which disables
MPI_SEND ready_to_receive polling in the gather_* subroutines.


Revision 1.733 - (view) (download) (annotate) - [select for diffs]
Tue Oct 17 19:08:57 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.732: +6 -2 lines
Diff to previous 1.732
o clean-up multi-threaded problems (reported by debugger tcheck on ACES);
  add (in global_with_exf/code) a version of EXF_INTERP_READ without
  dynamical allocation (seems to work in multi-threaded).
o new function "MASTER_CPU_IO" (=T if master thread & master CPU, if using
  single CPU io) so that TAF does not have to see EESUPPORT.h


Revision 1.732 - (view) (download) (annotate) - [select for diffs]
Thu Oct 12 01:14:05 2006 UTC (17 years, 4 months ago) by cnh
Branch: MAIN
Changes since 1.731: +2 -1 lines
Diff to previous 1.731
Test 2


Revision 1.731 - (view) (download) (annotate) - [select for diffs]
Wed Oct 11 23:26:13 2006 UTC (17 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.730: +1 -2 lines
Diff to previous 1.730
test


Revision 1.730 - (view) (download) (annotate) - [select for diffs]
Wed Oct 11 19:30:01 2006 UTC (17 years, 4 months ago) by cnh
Branch: MAIN
Changes since 1.729: +2 -1 lines
Diff to previous 1.729
A test


Revision 1.729 - (view) (download) (annotate) - [select for diffs]
Fri Oct 6 19:44:51 2006 UTC (17 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.728: +1 -2 lines
Diff to previous 1.728
test-2


Revision 1.728 - (view) (download) (annotate) - [select for diffs]
Fri Oct 6 19:39:03 2006 UTC (17 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.727: +2 -1 lines
Diff to previous 1.727
test


Revision 1.727 - (view) (download) (annotate) - [select for diffs]
Thu Oct 5 18:44:20 2006 UTC (17 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.726: +3 -1 lines
Diff to previous 1.726
o pkg/seaice: implement sea-ice loading (when using RealFreshWaterFlux)


Revision 1.726 - (view) (download) (annotate) - [select for diffs]
Wed Sep 27 11:32:31 2006 UTC (17 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.725: +2 -1 lines
Diff to previous 1.725
stop if obcs is used with useCDscheme = .true.


Revision 1.725 - (view) (download) (annotate) - [select for diffs]
Fri Sep 8 23:41:17 2006 UTC (17 years, 5 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint58p_post
Changes since 1.724: +2 -2 lines
Diff to previous 1.724
The Pre-India tag.


Revision 1.724 - (view) (download) (annotate) - [select for diffs]
Wed Sep 6 18:31:32 2006 UTC (17 years, 6 months ago) by heimbach
Branch: MAIN
Changes since 1.723: +3 -1 lines
Diff to previous 1.723
Updating


Revision 1.723 - (view) (download) (annotate) - [select for diffs]
Fri Sep 1 10:17:39 2006 UTC (17 years, 6 months ago) by mlosch
Branch: MAIN
Changes since 1.722: +6 -1 lines
Diff to previous 1.722
document recent changes


Revision 1.722 - (view) (download) (annotate) - [select for diffs]
Thu Aug 31 15:33:43 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.721: +2 -1 lines
Diff to previous 1.721
just to test


Revision 1.721 - (view) (download) (annotate) - [select for diffs]
Tue Aug 29 18:10:03 2006 UTC (17 years, 6 months ago) by dfer
Branch: MAIN
Changes since 1.720: +3 -1 lines
Diff to previous 1.720
*** empty log message ***


Revision 1.720 - (view) (download) (annotate) - [select for diffs]
Mon Aug 28 15:33:37 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58o_post
Changes since 1.719: +4 -1 lines
Diff to previous 1.719
checkpoint58o_post
o replace calls to EXCH_Z & EXCH_UV_AGRID: use the new _3D_ version ;
  remove old subroutines (_XY_ & _XYZ_); update the adjoint version.


Revision 1.719 - (view) (download) (annotate) - [select for diffs]
Thu Aug 24 20:41:53 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.718: +4 -1 lines
Diff to previous 1.718
o change controling S/R for writing pickup file (new S/R do_write_pickup)
  and clean-up reading/writing of pickup files.
o fix local version of read/write pickup (NH part) in rotating_tank/code


Revision 1.718 - (view) (download) (annotate) - [select for diffs]
Wed Aug 23 15:26:17 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.717: +5 -1 lines
Diff to previous 1.717
o simplify EXCH interface:
 - change _XYZ_ interface to _3D_ subroutine (with 3rd dim in argument list)
 - not often used EXCH S/R (exch_z, exch_uv_agrid): keep only the _3D_ version


Revision 1.717 - (view) (download) (annotate) - [select for diffs]
Tue Aug 15 04:30:53 2006 UTC (17 years, 6 months ago) by edhill
Branch: MAIN
Changes since 1.716: +2 -1 lines
Diff to previous 1.716
created regrid package


Revision 1.716 - (view) (download) (annotate) - [select for diffs]
Mon Aug 14 17:29:53 2006 UTC (17 years, 6 months ago) by mlosch
Branch: MAIN
Changes since 1.715: +4 -3 lines
Diff to previous 1.715
updating


Revision 1.715 - (view) (download) (annotate) - [select for diffs]
Mon Aug 14 16:53:08 2006 UTC (17 years, 6 months ago) by mlosch
Branch: MAIN
Changes since 1.714: +3 -1 lines
Diff to previous 1.714
updating


Revision 1.714 - (view) (download) (annotate) - [select for diffs]
Mon Aug 14 01:11:08 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58n_post
Changes since 1.713: +2 -1 lines
Diff to previous 1.713
checkpoint58n_post


Revision 1.713 - (view) (download) (annotate) - [select for diffs]
Mon Aug 14 00:43:23 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.712: +3 -1 lines
Diff to previous 1.712
o fix globalArea multi-threaded calculation: need to apply GLOBAL_SUM to
   local variable (not in common block).


Revision 1.712 - (view) (download) (annotate) - [select for diffs]
Wed Aug 9 16:02:19 2006 UTC (17 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.711: +7 -2 lines
Diff to previous 1.711
o lot of small changes for multi-threaded. Most tests (using OMP & ifort) pass.
  - still problems with pkgs: mnc, exp2, dic, cal, exf (and probably more);
  - still BEGIN_MASTER/END_MASTER to remove around READ/WRITE_FLD S/R calls
    to work with SingleCpuIO.


Revision 1.711 - (view) (download) (annotate) - [select for diffs]
Sun Aug 6 01:46:46 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.710: +3 -2 lines
Diff to previous 1.710
o add "_d 0" to real constant of pkg/cfc subroutines ;
  update exp. cfc_exemple & tutorial_cfc_offline output files.


Revision 1.710 - (view) (download) (annotate) - [select for diffs]
Fri Aug 4 23:36:17 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.709: +9 -1 lines
Diff to previous 1.709
o multi-threading and IO:
  - all threads call READ_FLD S/R (needed if using SingleCpuIO):
    (no BEGIN_MASTER/ END_MASTER around the call, but inside MDSIO S/R.
  - barrier before and after reading.
  - stop if other than master is calling MDS_WRITELOCAL (if #undef IO_THREAD_SAFE)
  - avoid using MDS_WRITELOCAL for LAND pkg output.
  - new S/R AIM_WRITE_PHYS (replaces AIM_WRITE_LOCAL) to write AIM physics
    common-block variables ; Allows multi-threading with master-thread IO.


Revision 1.709 - (view) (download) (annotate) - [select for diffs]
Sun Jul 30 01:04:07 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.708: +5 -1 lines
Diff to previous 1.708
o change default MAX_NO_THREADS from 32 to 4 ;
  and stop cleanly when MAX_NO_THREADS is too small.
o add S/R BAR_CHECK to check multi-threaded barrier synchronization


Revision 1.708 - (view) (download) (annotate) - [select for diffs]
Mon Jul 17 01:54:55 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58m_post
Changes since 1.707: +2 -1 lines
Diff to previous 1.707
tag checkpoint58m_post


Revision 1.707 - (view) (download) (annotate) - [select for diffs]
Sun Jul 16 03:59:39 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.706: +3 -1 lines
Diff to previous 1.706
o add a Non-Hydroatatic test (with 3-D Coriolis, NHMTerms, biharmonic Visc.
   and side-drag) on CS-grid : global_ocean.cs32x15.viscA4


Revision 1.706 - (view) (download) (annotate) - [select for diffs]
Sun Jul 16 00:27:38 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.705: +6 -1 lines
Diff to previous 1.705
o make "tutorial_global_oce_latlon" from standard "global_ocean.90x40x15" exp.
   keep global_ocean.90x40x15 (for AD testing) with former secondary test
   (".qshyd") as the main test (mv output.qshyd.txt to output.txt)
o CVS modules: update MITgcm_verif_basic; remove MITgcm_verif_ocean & _verif_atmos;
    add MITgcm_tutorials (= code + all the tutorials)


Revision 1.705 - (view) (download) (annotate) - [select for diffs]
Sat Jul 15 01:23:19 2006 UTC (17 years, 7 months ago) by gforget
Branch: MAIN
Changes since 1.704: +2 -1 lines
Diff to previous 1.704
update


Revision 1.704 - (view) (download) (annotate) - [select for diffs]
Fri Jul 14 22:34:57 2006 UTC (17 years, 7 months ago) by gforget
Branch: MAIN
Changes since 1.703: +2 -1 lines
Diff to previous 1.703
update


Revision 1.703 - (view) (download) (annotate) - [select for diffs]
Fri Jul 14 22:14:28 2006 UTC (17 years, 7 months ago) by gforget
Branch: MAIN
Changes since 1.702: +2 -1 lines
Diff to previous 1.702
update


Revision 1.702 - (view) (download) (annotate) - [select for diffs]
Fri Jul 14 22:06:33 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.701: +3 -1 lines
Diff to previous 1.701
o testreport: change multi-test output-file name
  (from output.txt.{name} to output.{name}.txt)


Revision 1.701 - (view) (download) (annotate) - [select for diffs]
Fri Jul 14 20:20:36 2006 UTC (17 years, 7 months ago) by gforget
Branch: MAIN
Changes since 1.700: +2 -1 lines
Diff to previous 1.700
update


Revision 1.700 - (view) (download) (annotate) - [select for diffs]
Fri Jul 14 13:01:31 2006 UTC (17 years, 7 months ago) by mlosch
Branch: MAIN
Changes since 1.699: +4 -1 lines
Diff to previous 1.699
updating


Revision 1.699 - (view) (download) (annotate) - [select for diffs]
Thu Jul 13 22:23:32 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.698: +6 -1 lines
Diff to previous 1.698
o calc_gw:
 - add cosFacU in zonal viscous flux (harmonic.visc.).
 - put back side-drag (call new S/R MOM_W_SIDEDRAG) and output.txt.
   of tutorial_plume_on_slope.
o obcs_calc.F : fix index Pb in OBSeta & OBNeta (Thanks to Gianmaria).


Revision 1.698 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 14:29:07 2006 UTC (17 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.697: +9 -2 lines
Diff to previous 1.697
o calc_gw: true flux-form, account for horizontal grid spacing.
  update rotating_tank results, but not plume_on_slope (affected at
  truncation level, 11 digits).


Revision 1.697 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 00:01:53 2006 UTC (17 years, 7 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint58l_post
Changes since 1.696: +4 -1 lines
Diff to previous 1.696
Updating and tagging for rbcs adjoint


Revision 1.696 - (view) (download) (annotate) - [select for diffs]
Sat Jul 8 00:29:20 2006 UTC (17 years, 8 months ago) by heimbach
Branch: MAIN
Changes since 1.695: +9 -3 lines
Diff to previous 1.695
Updating


Revision 1.695 - (view) (download) (annotate) - [select for diffs]
Fri Jul 7 21:56:15 2006 UTC (17 years, 8 months ago) by heimbach
Branch: MAIN
Changes since 1.694: +5 -1 lines
Diff to previous 1.694
Updating.


Revision 1.694 - (view) (download) (annotate) - [select for diffs]
Fri Jul 7 20:17:38 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.693: +3 -1 lines
Diff to previous 1.693
o take bi,bj loops outside calc_gw to fix Pb with local array KappaRU,V


Revision 1.693 - (view) (download) (annotate) - [select for diffs]
Thu Jul 6 00:33:33 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58k_post
Changes since 1.692: +2 -1 lines
Diff to previous 1.692
checkpoint58k_post


Revision 1.692 - (view) (download) (annotate) - [select for diffs]
Thu Jul 6 00:29:49 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.691: +7 -1 lines
Diff to previous 1.691
o testreport:
 - always build in dir. "build" (if not there, mkdir build instead of building
   & running in input)
 - run in dir run (if it exists), in build otherwise.
 - call prepare_run (if input/prepare_run exists)
 - run multi-threaded test (with new option: "-mth") using input/eedata.mth
   (if it exists).


Revision 1.691 - (view) (download) (annotate) - [select for diffs]
Fri Jun 30 12:05:42 2006 UTC (17 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.690: +5 -1 lines
Diff to previous 1.690
o pkg/exf modifications to interpolation and rotation routines for more
   reasonable treatment of North Pole singularity: for tracers North Pole
   value is set to northernmost zonal-mean value, for zonal velocity it is
   set to zero, and for meridional velocity it is set to northernmost value.


Revision 1.690 - (view) (download) (annotate) - [select for diffs]
Thu Jun 29 15:42:14 2006 UTC (17 years, 8 months ago) by mlosch
Branch: MAIN
Changes since 1.689: +4 -1 lines
Diff to previous 1.689
updating


Revision 1.689 - (view) (download) (annotate) - [select for diffs]
Mon Jun 26 00:16:54 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.688: +3 -1 lines
Diff to previous 1.688
o pkg/diagnostics: (diagnostics_main_init.F)
  define title of isomorphic variables according to the current config.


Revision 1.688 - (view) (download) (annotate) - [select for diffs]
Sun Jun 25 22:48:19 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.687: +3 -2 lines
Diff to previous 1.687
- seaice-dynamics forcing: add atmospheric and seaice loading to SSH gradient


Revision 1.687 - (view) (download) (annotate) - [select for diffs]
Sun Jun 25 22:42:10 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.686: +3 -1 lines
Diff to previous 1.686
o pkg/thsice with pkg/seaice dynamics:
  fix domain of computation (interior only, required for exf) and do exchanges


Revision 1.686 - (view) (download) (annotate) - [select for diffs]
Fri Jun 23 04:36:25 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.685: +3 -1 lines
Diff to previous 1.685
o towards a standard way of dealing with multi-threading in MONITOR
  and ${PKG}_MONITOR subroutines (all except ptracers_monitor).


Revision 1.685 - (view) (download) (annotate) - [select for diffs]
Thu Jun 22 19:39:21 2006 UTC (17 years, 8 months ago) by baylor
Branch: MAIN
Changes since 1.684: +3 -1 lines
Diff to previous 1.684
Variable viscosities seem to work in nonhydrostatic calculations, so add tag.


Revision 1.684 - (view) (download) (annotate) - [select for diffs]
Tue Jun 20 21:20:25 2006 UTC (17 years, 8 months ago) by jmc
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Changes since 1.683: +2 -1 lines
Diff to previous 1.683
o make exf_monitor & seaice_monitor independant of the main (dynamics) monitor


Revision 1.683 - (view) (download) (annotate) - [select for diffs]
Mon Jun 19 15:56:42 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.682: +4 -1 lines
Diff to previous 1.682
o pkg/seaice: fix SEAICEuseEVPpickup parameter (put it in a commom block)
o generic_advdiff: DST advection S/R : use local copy of velocity to compute CFL
   (problems ? with gradient check in bottom_ctrl_5x5)


Revision 1.682 - (view) (download) (annotate) - [select for diffs]
Mon Jun 19 01:06:57 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.681: +5 -1 lines
Diff to previous 1.681
o tracer advection:
 - clean-up and simplify calc_common_factors.F
 - make a local copy of velocity and pass it (as u,v,r_Trans) to DST tracer
   advection subroutine (but still not used within DST advection S/R)


Revision 1.681 - (view) (download) (annotate) - [select for diffs]
Thu Jun 15 23:36:48 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58j_post
Changes since 1.680: +3 -1 lines
Diff to previous 1.680
o rename pkg aim_ocn_coupler to atm_ocn_coupler (later on, will be used without aim)


Revision 1.680 - (view) (download) (annotate) - [select for diffs]
Thu Jun 15 20:04:31 2006 UTC (17 years, 8 months ago) by heimbach
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Changes since 1.679: +7 -4 lines
Diff to previous 1.679
Tagging


Revision 1.679 - (view) (download) (annotate) - [select for diffs]
Thu Jun 15 17:03:16 2006 UTC (17 years, 8 months ago) by heimbach
Branch: MAIN
Changes since 1.678: +6 -1 lines
Diff to previous 1.678
Updating.


Revision 1.678 - (view) (download) (annotate) - [select for diffs]
Wed Jun 14 18:14:14 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58i_post
Changes since 1.677: +2 -1 lines
Diff to previous 1.677
checkpoint58i_post


Revision 1.677 - (view) (download) (annotate) - [select for diffs]
Wed Jun 14 16:09:00 2006 UTC (17 years, 8 months ago) by mlosch
Branch: MAIN
Changes since 1.676: +3 -1 lines
Diff to previous 1.676
updating


Revision 1.676 - (view) (download) (annotate) - [select for diffs]
Tue Jun 13 21:22:05 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.675: +3 -1 lines
Diff to previous 1.675
o Total number of Timers is finite (<=40): comment out 2 non-essential one
  in the_main_loop.F to avoid Pb (e.g., when running fizhi test)


Revision 1.675 - (view) (download) (annotate) - [select for diffs]
Mon Jun 12 22:25:38 2006 UTC (17 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.674: +3 -1 lines
Diff to previous 1.674
o vector_invariant: fix highOrderVorticity(=4.th.Order) advection
  on CS-grid: no longer loosing mass.


Revision 1.674 - (view) (download) (annotate) - [select for diffs]
Fri Jun 9 16:59:16 2006 UTC (17 years, 9 months ago) by jmc
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Changes since 1.673: +2 -1 lines
Diff to previous 1.673
o exf & curvilinear-grid: no longer modify longitude xC & xG.


Revision 1.673 - (view) (download) (annotate) - [select for diffs]
Fri Jun 9 00:20:30 2006 UTC (17 years, 9 months ago) by mlosch
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Changes since 1.672: +2 -1 lines
Diff to previous 1.672
o updating


Revision 1.672 - (view) (download) (annotate) - [select for diffs]
Thu Jun 8 23:09:55 2006 UTC (17 years, 9 months ago) by dimitri
Branch: MAIN
Changes since 1.671: +4 -1 lines
Diff to previous 1.671
o pkg/seaice: added SEAICEuseEVPpickup parameter
  - Set to false in order to start EVP solver with
    non-EVP pickup files when using SEAICEuseEVP


Revision 1.671 - (view) (download) (annotate) - [select for diffs]
Thu Jun 8 01:13:52 2006 UTC (17 years, 9 months ago) by jmc
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Changes since 1.670: +4 -1 lines
Diff to previous 1.670
o pkg/diagnostics: implement "periodic averaging diagnostics" (e.g.,
   used for mean seasonal cycle, mean diurnal cycle); add an example
   in verification/global_ocean.cs32x15/input.thsice/data.diagnostics


Revision 1.670 - (view) (download) (annotate) - [select for diffs]
Thu Jun 8 00:13:15 2006 UTC (17 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.669: +3 -1 lines
Diff to previous 1.669
 updating


Revision 1.669 - (view) (download) (annotate) - [select for diffs]
Wed Jun 7 02:02:52 2006 UTC (17 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint58h_post
Changes since 1.668: +11 -1 lines
Diff to previous 1.668
Tagging after bottom topography control code


Revision 1.668 - (view) (download) (annotate) - [select for diffs]
Wed Jun 7 01:43:54 2006 UTC (17 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint58g_post
Changes since 1.667: +2 -1 lines
Diff to previous 1.667
Tagging before bottom topog. control code


Revision 1.667 - (view) (download) (annotate) - [select for diffs]
Tue Jun 6 22:17:27 2006 UTC (17 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.666: +4 -2 lines
Diff to previous 1.666
updating


Revision 1.666 - (view) (download) (annotate) - [select for diffs]
Tue Jun 6 16:40:44 2006 UTC (17 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.665: +2 -1 lines
Diff to previous 1.665
updating


Revision 1.665 - (view) (download) (annotate) - [select for diffs]
Mon Jun 5 22:54:54 2006 UTC (17 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.664: +10 -1 lines
Diff to previous 1.664
updating


Revision 1.664 - (view) (download) (annotate) - [select for diffs]
Mon Jun 5 15:06:51 2006 UTC (17 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58f_post
Changes since 1.663: +2 -1 lines
Diff to previous 1.663
tag checkpoint58f_post


Revision 1.663 - (view) (download) (annotate) - [select for diffs]
Sat Jun 3 21:40:08 2006 UTC (17 years, 9 months ago) by mlosch
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Changes since 1.662: +3 -1 lines
Diff to previous 1.662
updating


Revision 1.662 - (view) (download) (annotate) - [select for diffs]
Tue May 30 22:49:21 2006 UTC (17 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.661: +7 -1 lines
Diff to previous 1.661
updating


Revision 1.661 - (view) (download) (annotate) - [select for diffs]
Thu May 25 18:37:35 2006 UTC (17 years, 9 months ago) by heimbach
Branch: MAIN
Changes since 1.660: +8 -2 lines
Diff to previous 1.660
updating


Revision 1.660 - (view) (download) (annotate) - [select for diffs]
Thu May 25 18:25:13 2006 UTC (17 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.659: +12 -1 lines
Diff to previous 1.659
 pkg/thSIce:
- split thsice_step_fwd.F in 2 S/R: thsice_step_temp.F & thsice_step_fwd.F
- put i,j loops inside S/R: THSICE_ALBEDO, THSICE_SOLVE4TEMP, THSICE_EXTEND
   and THSICE_CALC_THICKN
- for now, call to THSICE_GET_BULKF remains inside i,j loops.
- add CPP option: ALLOW_DBUG_THSICE and header file THSICE_DEBUG.h
  to make debugging easier.
- affects results (@ truncation level) of global_ocean.cs32x15.thsice: update output
o pkg/bulk_force:
  - clean-up comments and parameters ;
  - add new Bulk-Formulae from Large and Yeager, 2004, NCAR/TN-460+STR ;


Revision 1.659 - (view) (download) (annotate) - [select for diffs]
Tue May 23 16:49:22 2006 UTC (17 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.658: +3 -1 lines
Diff to previous 1.658
o fix bug in aim+thsice albedo: snow & ice thickness arguments were switched;
  generate new output for test-experiment: aim.5l_cs.thSI


Revision 1.658 - (view) (download) (annotate) - [select for diffs]
Mon May 22 00:25:20 2006 UTC (17 years, 9 months ago) by jmc
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Changes since 1.657: +4 -1 lines
Diff to previous 1.657
o results_ad : rename "output.txt_adm" to "output_adm.txt" and change
 testreport accordingly


Revision 1.657 - (view) (download) (annotate) - [select for diffs]
Wed May 17 00:02:22 2006 UTC (17 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58e_post
Changes since 1.656: +2 -1 lines
Diff to previous 1.656
tag checkpoint58e_post


Revision 1.656 - (view) (download) (annotate) - [select for diffs]
Sat May 6 18:14:15 2006 UTC (17 years, 10 months ago) by heimbach
Branch: MAIN
Changes since 1.655: +2 -3 lines
Diff to previous 1.655
updating


Revision 1.655 - (view) (download) (annotate) - [select for diffs]
Sat May 6 14:36:10 2006 UTC (17 years, 10 months ago) by heimbach
Branch: MAIN
Changes since 1.654: +3 -1 lines
Diff to previous 1.654
Updating


Revision 1.654 - (view) (download) (annotate) - [select for diffs]
Wed May 3 23:46:07 2006 UTC (17 years, 10 months ago) by heimbach
Branch: MAIN
Changes since 1.653: +4 -1 lines
Diff to previous 1.653
Updating.


Revision 1.653 - (view) (download) (annotate) - [select for diffs]
Fri Apr 28 22:54:02 2006 UTC (17 years, 10 months ago) by heimbach
Branch: MAIN
Changes since 1.652: +4 -1 lines
Diff to previous 1.652
update


Revision 1.652 - (view) (download) (annotate) - [select for diffs]
Fri Apr 21 14:29:57 2006 UTC (17 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58d_post
Changes since 1.651: +2 -2 lines
Diff to previous 1.651
tag checkpoint58d_post


Revision 1.651 - (view) (download) (annotate) - [select for diffs]
Thu Apr 20 21:30:02 2006 UTC (17 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.650: +14 -1 lines
Diff to previous 1.650
o upgrade simple test-experiment to tutorial example:
 step.1: duplicate the experiment and (step.2) will remove the old copy.
  tutorial_barotropic_gyre      <- copy of exp0     (R1:barotropic_gyre_in_a_box)
  tutorial_baroclinic_gyre      <- copy of exp1     (R1:baroclinic_gyre_on_a_sphere)
  tutorial_global_oce_latlon    <- empty for now    (R1:global_ocean_circulation)
  tutorial_global_oce_biogeo    <- copy of dic_example
  tutorial_deep_convection      <- almost like exp5 (R1:nonhydrostatic_deep_convection)  tutorial_plume_on_slope       <- copy of plume_on_slope
  tutorial_tracer_adjsens       <- copy of carbon   (R1:tracer_adjoint_sensitivity)
  tutorial_global_oce_optim     <- empty for now (David ?)
  tutorial_global_oce_in_p      <- copy of global_ocean_pressure
 some tutorials (R1) were already checked-in under tutorial_examples in release1_branch


Revision 1.650 - (view) (download) (annotate) - [select for diffs]
Wed Apr 19 19:43:10 2006 UTC (17 years, 10 months ago) by gforget
Branch: MAIN
Changes since 1.649: +2 -1 lines
Diff to previous 1.649
correct a problem of sign in cost_scat.F


Revision 1.649 - (view) (download) (annotate) - [select for diffs]
Tue Apr 18 13:47:40 2006 UTC (17 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.648: +3 -1 lines
Diff to previous 1.648
updating


Revision 1.648 - (view) (download) (annotate) - [select for diffs]
Sun Apr 9 17:36:48 2006 UTC (17 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.647: +2 -1 lines
Diff to previous 1.647
updating


Revision 1.647 - (view) (download) (annotate) - [select for diffs]
Wed Apr 5 21:27:19 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.646: +3 -1 lines
Diff to previous 1.646
updating


Revision 1.646 - (view) (download) (annotate) - [select for diffs]
Wed Apr 5 15:44:47 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.645: +3 -1 lines
Diff to previous 1.645
updating


Revision 1.645 - (view) (download) (annotate) - [select for diffs]
Tue Apr 4 14:59:10 2006 UTC (17 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.644: +4 -1 lines
Diff to previous 1.644
Updating.


Revision 1.644 - (view) (download) (annotate) - [select for diffs]
Tue Apr 4 07:47:32 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.643: +3 -1 lines
Diff to previous 1.643
updating


Revision 1.643 - (view) (download) (annotate) - [select for diffs]
Thu Mar 30 20:59:21 2006 UTC (17 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.642: +4 -1 lines
Diff to previous 1.642
o move NH metric terms & 3.D Coriolis S/R to pkg/mom_common
  and add those terms in Vector-Invariant formulation.


Revision 1.642 - (view) (download) (annotate) - [select for diffs]
Wed Mar 29 22:11:08 2006 UTC (17 years, 11 months ago) by gforget
Branch: MAIN
Changes since 1.641: +6 -2 lines
Diff to previous 1.641
some modifications in ecco, ctrl and profiles pkgs


Revision 1.641 - (view) (download) (annotate) - [select for diffs]
Fri Mar 24 23:01:39 2006 UTC (17 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.640: +5 -3 lines
Diff to previous 1.640
Updating


Revision 1.640 - (view) (download) (annotate) - [select for diffs]
Fri Mar 24 11:43:19 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.639: +2 -1 lines
Diff to previous 1.639
updating


Revision 1.639 - (view) (download) (annotate) - [select for diffs]
Thu Mar 23 23:08:09 2006 UTC (17 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.638: +5 -1 lines
Diff to previous 1.638
Updating


Revision 1.638 - (view) (download) (annotate) - [select for diffs]
Thu Mar 23 19:59:59 2006 UTC (17 years, 11 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint58c_post
Changes since 1.637: +4 -1 lines
Diff to previous 1.637
Updating


Revision 1.637 - (view) (download) (annotate) - [select for diffs]
Tue Mar 21 13:00:33 2006 UTC (17 years, 11 months ago) by mlosch
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Changes since 1.636: +5 -1 lines
Diff to previous 1.636
document EVP-seaice


Revision 1.636 - (view) (download) (annotate) - [select for diffs]
Mon Mar 20 21:54:37 2006 UTC (17 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.635: +4 -1 lines
Diff to previous 1.635
o move calendarDumps from "data" to "data.cal" and clean-up the code
  with a simple call to pkg/cal S/R: CAL_TIME2WRITE
o add useEXF & useCAL flags (for now, set in hard-coded way)


Revision 1.635 - (view) (download) (annotate) - [select for diffs]
Mon Mar 20 14:49:24 2006 UTC (17 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.634: +6 -1 lines
Diff to previous 1.634
o add S/R to compute NH-metrics terms & Coriolis f' in vertical momentum
  (were missing in NH mode, and wrong in quasihydrostatic mode).
  waiting for Chris updated version of calc_gw to add those CALLs.
o fix bug in quasihydrostatic S/R ;
  add a test for this option: global_ocean.90x40x15.qshyd


Revision 1.634 - (view) (download) (annotate) - [select for diffs]
Fri Mar 17 16:24:23 2006 UTC (17 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.633: +4 -1 lines
Diff to previous 1.633
o new S/R "SET_PARMS": set parameters that might depend on the use of some pkgs.
  (called from INITIALISE_FIXED, after INI_PARMS & PACKAGES_READPARAMS)
o add on/off flag useOffLine for package OFFLINE


Revision 1.633 - (view) (download) (annotate) - [select for diffs]
Wed Mar 15 21:13:01 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.632: +2 -2 lines
Diff to previous 1.632
updating


Revision 1.632 - (view) (download) (annotate) - [select for diffs]
Wed Mar 15 19:52:16 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.631: +9 -1 lines
Diff to previous 1.631
updating


Revision 1.631 - (view) (download) (annotate) - [select for diffs]
Wed Mar 15 15:05:53 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.630: +3 -1 lines
Diff to previous 1.630
updating


Revision 1.630 - (view) (download) (annotate) - [select for diffs]
Wed Mar 15 13:06:14 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.629: +6 -2 lines
Diff to previous 1.629
updating
the noise in the seaice C-grid solver remains )o:


Revision 1.629 - (view) (download) (annotate) - [select for diffs]
Tue Mar 14 11:41:17 2006 UTC (17 years, 11 months ago) by mlosch
Branch: MAIN
Changes since 1.628: +3 -1 lines
Diff to previous 1.628
updating


Revision 1.628 - (view) (download) (annotate) - [select for diffs]
Mon Mar 13 04:44:25 2006 UTC (17 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58b_post
Changes since 1.627: +2 -1 lines
Diff to previous 1.627
checkpoint58b_post


Revision 1.627 - (view) (download) (annotate) - [select for diffs]
Mon Mar 13 04:36:59 2006 UTC (17 years, 11 months ago) by jmc
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Changes since 1.626: +3 -1 lines
Diff to previous 1.626
o AIM+thSIce: fix sign of Short-Wave through the Ice ;
  update output.txt of exp. aim.5l_cs.thSI


Revision 1.626 - (view) (download) (annotate) - [select for diffs]
Fri Mar 10 05:50:22 2006 UTC (18 years ago) by edhill
Branch: MAIN
Changes since 1.625: +5 -1 lines
Diff to previous 1.625
various mnc cleanups and improvements:
 + shrink lookup tables by factor of ~4
 + better error reporting when running out of lookup space
 + able to handle longer path/file names (up to 500 chars)


Revision 1.625 - (view) (download) (annotate) - [select for diffs]
Wed Mar 8 06:43:37 2006 UTC (18 years ago) by heimbach
Branch: MAIN
Changes since 1.624: +4 -1 lines
Diff to previous 1.624
o Another overhaul of store dirs. for NLFS to eliminate  "hidden" recomputations.
o TBD: "hidden" mom_vecinv recomp. in dynamics


Revision 1.624 - (view) (download) (annotate) - [select for diffs]
Tue Mar 7 17:31:03 2006 UTC (18 years ago) by jmc
Branch: MAIN
Changes since 1.623: +5 -1 lines
Diff to previous 1.623
change forcing_In_AB to affects both T,S forcing and Momentum forcing
and add new flag to put Dissipation tendency out of Adams-Bashforth.


Revision 1.623 - (view) (download) (annotate) - [select for diffs]
Mon Mar 6 19:19:59 2006 UTC (18 years ago) by heimbach
Branch: MAIN
Changes since 1.622: +8 -1 lines
Diff to previous 1.622
updating


Revision 1.622 - (view) (download) (annotate) - [select for diffs]
Mon Mar 6 13:18:16 2006 UTC (18 years ago) by mlosch
Branch: MAIN
Changes since 1.621: +13 -1 lines
Diff to previous 1.621
o updating


Revision 1.621 - (view) (download) (annotate) - [select for diffs]
Fri Mar 3 18:36:53 2006 UTC (18 years ago) by edhill
Branch: MAIN
Changes since 1.620: +3 -1 lines
Diff to previous 1.620
remove the BUILD_INFO.h include from CPP_EEOPTIONS.h


Revision 1.620 - (view) (download) (annotate) - [select for diffs]
Fri Mar 3 10:21:29 2006 UTC (18 years ago) by mlosch
Branch: MAIN
Changes since 1.619: +2 -1 lines
Diff to previous 1.619
updating


Revision 1.619 - (view) (download) (annotate) - [select for diffs]
Fri Mar 3 07:52:57 2006 UTC (18 years ago) by mlosch
Branch: MAIN
Changes since 1.618: +6 -2 lines
Diff to previous 1.618
updating


Revision 1.618 - (view) (download) (annotate) - [select for diffs]
Thu Mar 2 22:52:09 2006 UTC (18 years ago) by jmc
Branch: MAIN
Changes since 1.617: +3 -1 lines
Diff to previous 1.617
o Apply mask on Fresh-Water flux (needed for SSH forcing).
  update output.txt of exp. global_ocean_ebm & cpl_aim+ocn (affects cg2d residual)


Revision 1.617 - (view) (download) (annotate) - [select for diffs]
Thu Mar 2 16:10:08 2006 UTC (18 years ago) by mlosch
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Changes since 1.616: +2 -1 lines
Diff to previous 1.616
updating


Revision 1.616 - (view) (download) (annotate) - [select for diffs]
Thu Mar 2 02:56:54 2006 UTC (18 years ago) by heimbach
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Changes since 1.615: +5 -1 lines
Diff to previous 1.615
Adding parameter to remove on-the-fly global mean and trend from
exf forcing and ctrl control adjustments


Revision 1.615 - (view) (download) (annotate) - [select for diffs]
Thu Mar 2 02:03:39 2006 UTC (18 years ago) by jmc
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Changes since 1.614: +2 -1 lines
Diff to previous 1.614
o change the default rotation period to 86164.s = the Earth rotation


Revision 1.614 - (view) (download) (annotate) - [select for diffs]
Fri Feb 24 00:57:55 2006 UTC (18 years ago) by jmc
Branch: MAIN
Changes since 1.613: +3 -1 lines
Diff to previous 1.613
o 1rst implementation of Implicit IGW using the 3-D solver (use3Dsolver=T)
  and based on a reference stratification. Tested within hs94.cs-32x32x5.


Revision 1.613 - (view) (download) (annotate) - [select for diffs]
Thu Feb 16 10:42:31 2006 UTC (18 years ago) by mlosch
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Changes since 1.612: +7 -4 lines
Diff to previous 1.612
 updating


Revision 1.612 - (view) (download) (annotate) - [select for diffs]
Wed Feb 15 09:25:25 2006 UTC (18 years ago) by mlosch
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Changes since 1.611: +4 -1 lines
Diff to previous 1.611
 forgot to commit an earlier comment, sorry


Revision 1.611 - (view) (download) (annotate) - [select for diffs]
Wed Feb 15 09:06:20 2006 UTC (18 years ago) by mlosch
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Changes since 1.610: +10 -1 lines
Diff to previous 1.610
updating


Revision 1.610 - (view) (download) (annotate) - [select for diffs]
Wed Feb 15 08:59:48 2006 UTC (18 years ago) by mlosch
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Changes since 1.609: +2 -1 lines
Diff to previous 1.609
taggin before I commit seaice changes


Revision 1.609 - (view) (download) (annotate) - [select for diffs]
Mon Feb 13 13:11:31 2006 UTC (18 years ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint58a_post
Changes since 1.608: +5 -2 lines
Diff to previous 1.608
updating


Revision 1.608 - (view) (download) (annotate) - [select for diffs]
Fri Feb 10 10:01:03 2006 UTC (18 years ago) by mlosch
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Changes since 1.607: +11 -1 lines
Diff to previous 1.607
updating


Revision 1.607 - (view) (download) (annotate) - [select for diffs]
Fri Feb 10 07:56:43 2006 UTC (18 years ago) by mlosch
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Changes since 1.606: +6 -1 lines
Diff to previous 1.606
updating


Revision 1.606 - (view) (download) (annotate) - [select for diffs]
Fri Feb 10 00:33:31 2006 UTC (18 years ago) by jmc
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Changes since 1.605: +2 -1 lines
Diff to previous 1.605
o fix bug (typo) in obcs_apply_eta.F


Revision 1.605 - (view) (download) (annotate) - [select for diffs]
Tue Feb 7 11:48:22 2006 UTC (18 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.604: +10 -1 lines
Diff to previous 1.604
o updating


Revision 1.604 - (view) (download) (annotate) - [select for diffs]
Tue Feb 7 08:09:34 2006 UTC (18 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.603: +6 -3 lines
Diff to previous 1.603
updating


Revision 1.603 - (view) (download) (annotate) - [select for diffs]
Fri Jan 27 20:19:12 2006 UTC (18 years, 1 month ago) by mlosch
Branch: MAIN
Changes since 1.602: +3 -1 lines
Diff to previous 1.602
updating


Revision 1.602 - (view) (download) (annotate) - [select for diffs]
Thu Jan 26 01:57:44 2006 UTC (18 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.601: +4 -1 lines
Diff to previous 1.601
o AIM pkg: change threshold on large-scale condensation to conserve Heat.


Revision 1.601 - (view) (download) (annotate) - [select for diffs]
Tue Jan 24 03:17:38 2006 UTC (18 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.600: +4 -1 lines
Diff to previous 1.600
o pkg/diagnostics: add options and parameters for regional-statistics
   diagnostics ; define regions by reading a region-mask from a file
   (might add other options later)


Revision 1.600 - (view) (download) (annotate) - [select for diffs]
Sun Jan 22 16:49:26 2006 UTC (18 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.599: +12 -1 lines
Diff to previous 1.599
o pkg/bulk_force:
 - add option and parameters to use AIM surface-flux formulae.
 + some cleaning.


Revision 1.599 - (view) (download) (annotate) - [select for diffs]
Thu Jan 12 16:49:07 2006 UTC (18 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58
Changes since 1.598: +2 -1 lines
Diff to previous 1.598
checkpoint58


Revision 1.598 - (view) (download) (annotate) - [select for diffs]
Wed Jan 11 06:04:11 2006 UTC (18 years, 1 month ago) by edhill
Branch: MAIN
Changes since 1.597: +8 -1 lines
Diff to previous 1.597
add "--embed-source"


Revision 1.597 - (view) (download) (annotate) - [select for diffs]
Mon Jan 2 21:19:06 2006 UTC (18 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.596: +6 -1 lines
Diff to previous 1.596
Updating


Revision 1.596 - (view) (download) (annotate) - [select for diffs]
Sat Dec 31 01:21:41 2005 UTC (18 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57z_post
Changes since 1.595: +2 -1 lines
Diff to previous 1.595
tag checkpoint57z_post


Revision 1.595 - (view) (download) (annotate) - [select for diffs]
Thu Dec 22 21:16:17 2005 UTC (18 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.594: +6 -4 lines
Diff to previous 1.594
Updating


Revision 1.594 - (view) (download) (annotate) - [select for diffs]
Thu Dec 22 16:01:45 2005 UTC (18 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.593: +6 -1 lines
Diff to previous 1.593
Updating


Revision 1.593 - (view) (download) (annotate) - [select for diffs]
Tue Dec 20 20:55:05 2005 UTC (18 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.592: +3 -1 lines
Diff to previous 1.592
o make CG3D solver compatible with Free-surface at k > 1 (p-coordinate):
  affects output (@ truncation level) of exp. plume_on_slope ; updated.


Revision 1.592 - (view) (download) (annotate) - [select for diffs]
Wed Dec 14 16:47:12 2005 UTC (18 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.591: +6 -4 lines
Diff to previous 1.591
o updating


Revision 1.591 - (view) (download) (annotate) - [select for diffs]
Tue Dec 13 23:29:25 2005 UTC (18 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.590: +4 -1 lines
Diff to previous 1.590
o no AB-2 on Gw at the first iteration (consistent with Gu,Gv,Gt,Gs ...)
  affect results of NH experiments (but all our NH tests have Gw[it=1]==0 !!)
o transfert surface NH pressure to eta field (if exactConserv).


Revision 1.590 - (view) (download) (annotate) - [select for diffs]
Tue Dec 13 19:53:52 2005 UTC (18 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.589: +14 -1 lines
Diff to previous 1.589
Adding unfinished 3-dim. relaxation code.


Revision 1.589 - (view) (download) (annotate) - [select for diffs]
Thu Dec 8 22:25:07 2005 UTC (18 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.588: +4 -1 lines
Diff to previous 1.588
o gmredi: fix bugs in slope tapering ldd97 (depthZ had the wrong sign)
     and update lab_sea output.txt file.


Revision 1.588 - (view) (download) (annotate) - [select for diffs]
Thu Dec 8 15:47:40 2005 UTC (18 years, 3 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57y_post
Changes since 1.587: +7 -1 lines
Diff to previous 1.587
Updating


Revision 1.587 - (view) (download) (annotate) - [select for diffs]
Thu Dec 8 15:34:24 2005 UTC (18 years, 3 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57y_pre
Changes since 1.586: +3 -1 lines
Diff to previous 1.586
Update


Revision 1.586 - (view) (download) (annotate) - [select for diffs]
Thu Dec 8 15:09:31 2005 UTC (18 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.585: +2 -1 lines
Diff to previous 1.585
o obcs: always reset wVel & eta (to zero or prescribe it) at the OBs.


Revision 1.585 - (view) (download) (annotate) - [select for diffs]
Thu Dec 8 00:18:08 2005 UTC (18 years, 3 months ago) by stephd
Branch: MAIN
Changes since 1.584: +2 -1 lines
Diff to previous 1.584
o adding new package rbcs


Revision 1.584 - (view) (download) (annotate) - [select for diffs]
Tue Dec 6 17:57:40 2005 UTC (18 years, 3 months ago) by stephd
Branch: MAIN
Changes since 1.583: +6 -1 lines
Diff to previous 1.583
o gchem/dic/cfc/offline changes


Revision 1.583 - (view) (download) (annotate) - [select for diffs]
Sun Dec 4 22:14:06 2005 UTC (18 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57x_post
Changes since 1.582: +3 -1 lines
Diff to previous 1.582
checkpoint57x_post


Revision 1.582 - (view) (download) (annotate) - [select for diffs]
Fri Nov 25 06:07:19 2005 UTC (18 years, 3 months ago) by edhill
Branch: MAIN
Changes since 1.581: +4 -1 lines
Diff to previous 1.581
 o cleanup our namelist syntax in verification:
   - make it more F95 standards compliant (some work still needed)
   - allows the vast majority of our tests to work with gfortran


Revision 1.581 - (view) (download) (annotate) - [select for diffs]
Thu Nov 24 00:07:29 2005 UTC (18 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.580: +5 -1 lines
Diff to previous 1.580
o Disable useVariableViscosity for adjoint for time being
  (there are a number of extensive recomputations)
o Initialize certain variables needed for adjoint


Revision 1.580 - (view) (download) (annotate) - [select for diffs]
Tue Nov 8 06:27:15 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.579: +4 -1 lines
Diff to previous 1.579
o Non-Hydrostatic:
 - put all NH variables (formerly in DYNVARS.h & GW.h) in NH_VARS.h
 - fix exchange calls for CS-grid using the new EXCH_S3D_RL.


Revision 1.579 - (view) (download) (annotate) - [select for diffs]
Sun Nov 6 23:04:38 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.578: +6 -1 lines
Diff to previous 1.578
o Allow to apply AB on T,S rather than on AB(gT,gS):
 - implemented within #ifdef ALLOW_ADAMSBASHFORTH_3
 - use the same arrays (gtNm,gsNm) to hold tracer field at previous
   time-steps (if AB(T,S)) and tendencies (if AB(gT,gS)).
 - need a "clever" read_pickup to restart from the other AB formulation


Revision 1.578 - (view) (download) (annotate) - [select for diffs]
Sat Nov 5 01:10:21 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.577: +4 -1 lines
Diff to previous 1.577
o move local commom bloc /GlobalLo/ (used for singleCpuIO) in EESUPPORT.h
o remove some unused variables (reduces number of compiler warnings)


Revision 1.577 - (view) (download) (annotate) - [select for diffs]
Thu Nov 3 19:06:51 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57w_post
Changes since 1.576: +2 -1 lines
Diff to previous 1.576
checkpoint57w_post


Revision 1.576 - (view) (download) (annotate) - [select for diffs]
Thu Nov 3 17:34:32 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.575: +5 -2 lines
Diff to previous 1.575
pkg/mdsio: use MAX_LEN_FNAM (instead of hard coded 80) for file-names
           fix the singleCpuIO RS version of MDSWRITEFIELD
 and add a WARNING if using globalFiles=T with multi-processors.


Revision 1.575 - (view) (download) (annotate) - [select for diffs]
Mon Oct 24 18:20:11 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.574: +3 -1 lines
Diff to previous 1.574
o write grid-file(s) in only one format (MDS or MNC): default=MNC (if
  using MNC); can force MDS output by setting writegrid_mnc=F in data.mnc


Revision 1.574 - (view) (download) (annotate) - [select for diffs]
Sat Oct 22 22:42:07 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.573: +7 -1 lines
Diff to previous 1.573
o tracer advection scheme:
  add DST-2 (=Lax-Wendroff) & 1rst order upwind schemes (the way to get
   those 2 schemes before, changing GAD_FLUX_LIMITER.h + to recompile,
   was not very convenient).
  add implicit version for DST-3 & DST3_Flux_Limit vertical advection;
   (further tests needed for the implicit DST & Flux-Limiter schemes)


Revision 1.573 - (view) (download) (annotate) - [select for diffs]
Fri Oct 14 12:45:43 2005 UTC (18 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.572: +7 -2 lines
Diff to previous 1.572
o updating: add namelist parameter PTRACERS_ref in analogy to tRef
  and sRef for convenience, handy, when you want to initialize
  ptracers in a large domain with a constant non-zero value. Also,
  untangle ptracers_init.F a little.


Revision 1.572 - (view) (download) (annotate) - [select for diffs]
Thu Oct 13 16:35:52 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57v_post
Changes since 1.571: +3 -1 lines
Diff to previous 1.571
checkpoint57v_post
 o change dome exp. to use variable viscosity in side-drag terms.


Revision 1.571 - (view) (download) (annotate) - [select for diffs]
Thu Oct 13 01:28:24 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.570: +6 -1 lines
Diff to previous 1.570
o add new parameter: sideDragFactor to enable half-slip-side BC
  and change side-drag S/R to use viscosity from mom_calc_visc
  (can switch back by setting sideDragFactor=0.); affects results at
  truncation level; regenerate output for exp.: global_ocean.cs32x10(x3),
   global_ocean_ebm, global_ocean_pressure, matrix_example & MLAdjust(x5).


Revision 1.570 - (view) (download) (annotate) - [select for diffs]
Wed Oct 12 16:08:16 2005 UTC (18 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.569: +4 -1 lines
Diff to previous 1.569
 o remove all the files from the cfc_offline test since they are now
   incorporated into tutorial_cfc_offline which has been producing
   identical results for a few days of testing


Revision 1.569 - (view) (download) (annotate) - [select for diffs]
Wed Oct 12 02:13:40 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.568: +4 -1 lines
Diff to previous 1.568
o vorticity & strain are now computed without masking, to account for
  no-slip-side BC in variable viscosity calculation ; mask is applied
  anyway later on, before computing advection/coriolis terms.


Revision 1.568 - (view) (download) (annotate) - [select for diffs]
Tue Oct 11 13:18:17 2005 UTC (18 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.567: +3 -1 lines
Diff to previous 1.567
 updating


Revision 1.567 - (view) (download) (annotate) - [select for diffs]
Tue Oct 11 08:36:29 2005 UTC (18 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.566: +4 -1 lines
Diff to previous 1.566
o Updating:
  fix behavior of ptracers_monitor when monitor output is written to a
  netcdf-file; still not independent of monitor.F (writes in the same
  file).


Revision 1.566 - (view) (download) (annotate) - [select for diffs]
Tue Oct 11 01:34:15 2005 UTC (18 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.565: +3 -1 lines
Diff to previous 1.565
o change default value of tRef (put a uniform, meaningful value for ocean
  & atmos) and initialize sRef (was missing, as Martin mentioned).


Revision 1.565 - (view) (download) (annotate) - [select for diffs]
Mon Oct 10 19:49:48 2005 UTC (18 years, 4 months ago) by baylor
Branch: MAIN
Changes since 1.564: +6 -1 lines
Diff to previous 1.564
Fix bug and add to tag_index.


Revision 1.564 - (view) (download) (annotate) - [select for diffs]
Mon Oct 10 05:59:06 2005 UTC (18 years, 4 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpint57u_post
Changes since 1.563: +2 -2 lines
Diff to previous 1.563
fix typo (oh, well)


Revision 1.563 - (view) (download) (annotate) - [select for diffs]
Mon Oct 10 05:57:48 2005 UTC (18 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.562: +2 -1 lines
Diff to previous 1.562
Updating: new tag


Revision 1.562 - (view) (download) (annotate) - [select for diffs]
Mon Oct 10 05:55:52 2005 UTC (18 years, 4 months ago) by mlosch
Branch: MAIN
Changes since 1.561: +12 -1 lines
Diff to previous 1.561
Updating:
o OBCS and PTRACERS: add open boundary support for passive tracers
  - either use homogenous (pseudo) v.Neumann conditions or prescribe
    OB-values from file; this is not different from the way theta and salinity
    are treated
  - however, Orlanski-radiation conditions are not supported, and the model
    will stop if you use pTracers and Orlanski at the same time.
  - beefed up the rountine obcs_external_fields_load: now only those open
    boundary values are overwritten with values from files for which there
    are really files, otherwise the OB-fields remain untouched. This makes
    it possible to use different OBs at different ends of the domain (as
    with EXF)
  - TODO: add support for OB?w and OB?eta, which can currently not be read
    from a file.


Revision 1.561 - (view) (download) (annotate) - [select for diffs]
Fri Oct 7 00:36:29 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.560: +2 -1 lines
Diff to previous 1.560
o reduce number of exch calls in shap_filt (s2).


Revision 1.560 - (view) (download) (annotate) - [select for diffs]
Tue Oct 4 03:43:30 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.559: +4 -1 lines
Diff to previous 1.559
o CS-grid: fix divergence contribution to Leith viscosity. Affects (@
  truncation level) 4/5 MLAdjust test results (11&12 digits match).


Revision 1.559 - (view) (download) (annotate) - [select for diffs]
Mon Oct 3 12:57:47 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57t_post
Changes since 1.558: +2 -1 lines
Diff to previous 1.558
checkpoint57t_post


Revision 1.558 - (view) (download) (annotate) - [select for diffs]
Mon Oct 3 02:06:33 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.557: +6 -2 lines
Diff to previous 1.557
o new test: global_ocean.cs32x15.viscA4
o finish adding brackets (coriolis S/R, vecinv) in multi-terms sum.


Revision 1.557 - (view) (download) (annotate) - [select for diffs]
Fri Sep 30 00:15:18 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.556: +3 -1 lines
Diff to previous 1.556
o fix bug in mom_v_sidedrag (biharmonic viscosity was counted 2 times);
  note that biharmonic viscosity + no-slip is not tested in any experiment.


Revision 1.556 - (view) (download) (annotate) - [select for diffs]
Thu Sep 29 20:05:33 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.555: +3 -1 lines
Diff to previous 1.555
o fix bug in non-linear free-surf side-drag ; generate new output for
  global_ocean.cs32x15(+.thsice) & global_ocean_pressure.


Revision 1.555 - (view) (download) (annotate) - [select for diffs]
Thu Sep 29 12:19:52 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.554: +2 -1 lines
Diff to previous 1.554
 o make mnc honor the writeBinaryPrec flag for all the non-pickup and
   non-diagnostics output types


Revision 1.554 - (view) (download) (annotate) - [select for diffs]
Wed Sep 28 01:59:58 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.553: +2 -1 lines
Diff to previous 1.553
 o mention eesupp changes


Revision 1.553 - (view) (download) (annotate) - [select for diffs]
Wed Sep 28 00:20:52 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.552: +3 -1 lines
Diff to previous 1.552
o minor change in averaging W (mom_vi_?_vertshear.F) that affects truncation
  error; update output from global_ocean.cs32x15(+.thsice) & MLAdjust (all 5).


Revision 1.552 - (view) (download) (annotate) - [select for diffs]
Sat Sep 24 00:43:02 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.551: +5 -1 lines
Diff to previous 1.551
o add brackets in multi-terms sum to get same truncation, independent of
  the face number (manage to get exactly same value of gU,gV at the cs-edge)
  affects several test. exp. Update global_ocean.cs32x15 (+.thsice).


Revision 1.551 - (view) (download) (annotate) - [select for diffs]
Tue Sep 20 21:01:29 2005 UTC (18 years, 5 months ago) by baylor
Branch: MAIN
Changes since 1.550: +7 -1 lines
Diff to previous 1.550
Adding clean version of mom_calc_visc and viscAhRemax and viscA4Remax params.


Revision 1.550 - (view) (download) (annotate) - [select for diffs]
Tue Sep 20 18:09:04 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57s_post
Changes since 1.549: +4 -2 lines
Diff to previous 1.549
checkpoint57s_post


Revision 1.549 - (view) (download) (annotate) - [select for diffs]
Tue Sep 20 16:04:26 2005 UTC (18 years, 5 months ago) by baylor
Branch: MAIN
Changes since 1.548: +9 -2 lines
Diff to previous 1.548
Update tags to reflect corrections to viscosity calculations.


Revision 1.548 - (view) (download) (annotate) - [select for diffs]
Mon Sep 19 01:27:43 2005 UTC (18 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.547: +2 -1 lines
Diff to previous 1.547
o  diagnostics "VISCAHD" & "VISCA4D" replace "VISCAH" & "VISCA4".


Revision 1.547 - (view) (download) (annotate) - [select for diffs]
Wed Sep 14 17:57:54 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.546: +5 -1 lines
Diff to previous 1.546
 o In response to JMC's bug report, genmake2 now ignores any soft-links
   that it finds in the *current* directory when searching for files.
   Soft-links found in any other source directories will still work as
   they did before.  And regular (non-soft-link) files will also work as
   before.


Revision 1.546 - (view) (download) (annotate) - [select for diffs]
Sun Sep 11 18:52:25 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.545: +3 -1 lines
Diff to previous 1.545
 o add HAVE_SETRLSTK define and useSETRLSTK flag (eedata) which calls
   a C routine to unlimit the stack size
   - very helpful on clusters of workstations since the ulimit/limit
     behavior can (otherwise) only be inherited from parent processes
     which is difficult with some MPI-over-ssh/rsh implementations


Revision 1.545 - (view) (download) (annotate) - [select for diffs]
Sun Sep 11 04:37:01 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.544: +2 -1 lines
Diff to previous 1.544
 o mention aim


Revision 1.544 - (view) (download) (annotate) - [select for diffs]
Sat Sep 10 20:40:26 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.543: +2 -1 lines
Diff to previous 1.543
 o mnc-ify pkg/land as requested by Daniel


Revision 1.543 - (view) (download) (annotate) - [select for diffs]
Sat Sep 10 18:30:05 2005 UTC (18 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.542: +9 -1 lines
Diff to previous 1.542
 o various changes to mnc including:
   - all files use the new "BASENAME[[.ITER].{t|f}NUM].nc" format
   - output can now be grouped so that all files within a group
       change the ITER portion of their names in lock-step together
   - can now read ("global") PER-FACE (in addition to PER-TILE) files
       and works with both EXCH1 and EXCH2 (but needs more testing)
   - writing works for all verification test cases w/ g77 on Linux


Revision 1.542 - (view) (download) (annotate) - [select for diffs]
Wed Sep 7 15:24:03 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57r_post
Changes since 1.541: +2 -1 lines
Diff to previous 1.541
checkpoint57r_post


Revision 1.541 - (view) (download) (annotate) - [select for diffs]
Tue Sep 6 02:16:09 2005 UTC (18 years, 6 months ago) by edhill
Branch: MAIN
Changes since 1.540: +2 -1 lines
Diff to previous 1.540
 o make MNC variable initialization happen earlier


Revision 1.540 - (view) (download) (annotate) - [select for diffs]
Sun Sep 4 19:38:48 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.539: +2 -1 lines
Diff to previous 1.539
o add diagnostics for (almost) each term of the momentum Eq.


Revision 1.539 - (view) (download) (annotate) - [select for diffs]
Thu Sep 1 06:08:55 2005 UTC (18 years, 6 months ago) by heimbach
Branch: MAIN
Changes since 1.538: +9 -1 lines
Diff to previous 1.538
Updating


Revision 1.538 - (view) (download) (annotate) - [select for diffs]
Wed Aug 31 00:10:22 2005 UTC (18 years, 6 months ago) by heimbach
Branch: MAIN
Changes since 1.537: +3 -1 lines
Diff to previous 1.537
Updating.


Revision 1.537 - (view) (download) (annotate) - [select for diffs]
Thu Aug 25 22:21:43 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.536: +2 -1 lines
Diff to previous 1.536
o remove SST,SSS,UVEL_k2,VVEL_k2 diagnostics.


Revision 1.536 - (view) (download) (annotate) - [select for diffs]
Wed Aug 24 23:36:01 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.535: +4 -1 lines
Diff to previous 1.535
o move pkg timeave out of pkg-groups "oceanic" & "atmospheric" (pkg/pkg_groups)
o remove MINIMAL_TAVE_OUTPUT option ;
  add "dumpInitAndLast" to replace "nodumps" (and MINIMAL_TAVE_OUTPUT).


Revision 1.535 - (view) (download) (annotate) - [select for diffs]
Tue Aug 23 13:43:44 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.534: +4 -1 lines
Diff to previous 1.534
o move some basic S/R (used elsewhere in the code) from pkg/mdsio to eesupp/src
  allows to compile without pkg/mdsio (& test successfully hs94.1x64x5)


Revision 1.534 - (view) (download) (annotate) - [select for diffs]
Fri Aug 19 23:49:45 2005 UTC (18 years, 6 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57q_post
Changes since 1.533: +5 -1 lines
Diff to previous 1.533
Updating


Revision 1.533 - (view) (download) (annotate) - [select for diffs]
Tue Aug 16 22:50:56 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.532: +2 -1 lines
Diff to previous 1.532
o fix initialisation Pb in calc_gw (get NANs in exp5 with g77)


Revision 1.532 - (view) (download) (annotate) - [select for diffs]
Sat Aug 13 19:08:16 2005 UTC (18 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.531: +3 -1 lines
Diff to previous 1.531
o fix initialization Pb in AIM-Ocean coupled model (aim_sice2aim.F)
  update exp. cpl_aim+ocn output.


Revision 1.531 - (view) (download) (annotate) - [select for diffs]
Thu Aug 11 03:03:43 2005 UTC (18 years, 6 months ago) by edhill
Branch: MAIN
Changes since 1.530: +3 -1 lines
Diff to previous 1.530
 o mention seaice mnc/mdsio bug


Revision 1.530 - (view) (download) (annotate) - [select for diffs]
Wed Aug 10 03:41:44 2005 UTC (18 years, 6 months ago) by heimbach
Branch: MAIN
Changes since 1.529: +9 -1 lines
Diff to previous 1.529
Updating


Revision 1.529 - (view) (download) (annotate) - [select for diffs]
Mon Aug 1 13:31:57 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57p_post
Changes since 1.528: +6 -4 lines
Diff to previous 1.528
checkpoint57p_post


Revision 1.528 - (view) (download) (annotate) - [select for diffs]
Sun Jul 31 00:03:27 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.527: +4 -1 lines
Diff to previous 1.527
o move ${PKG}_MNC_INIT from ${PKG}_READ_PARAMS to ${PKG}_INIT_FIXED
  (already the case for some pkgs, including recent MNC_init, e.g. thsice)
o call CALC_GW from DYNAMICS (instead of from FORWARD_STEP)


Revision 1.527 - (view) (download) (annotate) - [select for diffs]
Sat Jul 30 23:33:23 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.526: +10 -1 lines
Diff to previous 1.526
o Dissipation & phiHyd gradient are always added to gU,gV in timestep.F
  (was already the case for dissipation with mom_vecinv,
   and also the case for grad.PhiHyd when staggered-timeStep)
  This will allow to put dissipation out-off the AB time-stepping.
 Unfortunately, affects truncation error. Update output of exp. that "fails"
  (cg2d matching number) and leave the others for later: front_relax(10),
  global_ocean_pressure(10),ideal_2D_oce(10),internal_wave(9),lab_sea(12),
  matrix_example(7!),natl_box(12),plume_on_slope(11),vermix(12x3,11x2).


Revision 1.526 - (view) (download) (annotate) - [select for diffs]
Sat Jul 30 11:47:39 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57o_post
Changes since 1.525: +5 -1 lines
Diff to previous 1.525
Updating & tagging


Revision 1.525 - (view) (download) (annotate) - [select for diffs]
Sat Jul 30 00:58:40 2005 UTC (18 years, 7 months ago) by edhill
Branch: MAIN
Changes since 1.524: +3 -1 lines
Diff to previous 1.524
 o fix MNC/MDSIO flags in PTRACERS so that (1) it works, and
   (2) its ready to be documented during the 20050801 DocFest


Revision 1.524 - (view) (download) (annotate) - [select for diffs]
Fri Jul 29 18:24:35 2005 UTC (18 years, 7 months ago) by edhill
Branch: MAIN
Changes since 1.523: +4 -1 lines
Diff to previous 1.523
 o MNC-ify the gmredi package -- tested and works w/ and w/o mnc
   for ideal_2D_oce and lab_sea on linux_ia32_g77


Revision 1.523 - (view) (download) (annotate) - [select for diffs]
Fri Jul 29 17:57:47 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57n_post
Changes since 1.522: +4 -3 lines
Diff to previous 1.522
Updating & tagging


Revision 1.522 - (view) (download) (annotate) - [select for diffs]
Fri Jul 29 05:25:55 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
Changes since 1.521: +9 -2 lines
Diff to previous 1.521
Updating


Revision 1.521 - (view) (download) (annotate) - [select for diffs]
Thu Jul 28 21:21:19 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
Changes since 1.520: +4 -5 lines
Diff to previous 1.520
Updating


Revision 1.520 - (view) (download) (annotate) - [select for diffs]
Thu Jul 28 15:13:59 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
Changes since 1.519: +4 -1 lines
Diff to previous 1.519
Updating


Revision 1.519 - (view) (download) (annotate) - [select for diffs]
Thu Jul 28 14:35:47 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
Changes since 1.518: +4 -2 lines
Diff to previous 1.518
Updating


Revision 1.518 - (view) (download) (annotate) - [select for diffs]
Thu Jul 28 14:34:11 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
Changes since 1.517: +5 -1 lines
Diff to previous 1.517
Adding precip control


Revision 1.517 - (view) (download) (annotate) - [select for diffs]
Thu Jul 28 13:43:14 2005 UTC (18 years, 7 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57m_post
Changes since 1.516: +2 -1 lines
Diff to previous 1.516
Tagging for pre-checkin


Revision 1.516 - (view) (download) (annotate) - [select for diffs]
Wed Jul 27 21:16:47 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.515: +3 -1 lines
Diff to previous 1.515
o re-arrange exp. adjustment.cs-32x32x1 (adjust_nlfs.cs-32x32x1 merge into)
  and advect_cs (use EXCH-2 and standard cs-32 grid files).


Revision 1.515 - (view) (download) (annotate) - [select for diffs]
Sun Jul 24 01:48:04 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.514: +4 -1 lines
Diff to previous 1.514
o pkg/exch2: filling of face-corner halo regions is optional
  (ifdef W2_FILL_NULL_REGIONS) and is turned off by default.


Revision 1.514 - (view) (download) (annotate) - [select for diffs]
Thu Jul 14 15:34:00 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57l_post
Changes since 1.513: +3 -1 lines
Diff to previous 1.513
checkpoint57l_post
 tag before updating tutorials (pre-release-2)


Revision 1.513 - (view) (download) (annotate) - [select for diffs]
Wed Jul 13 00:50:58 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.512: +5 -1 lines
Diff to previous 1.512
o add cos & sin of grid-direction orientation angle (curvilinear grid only,
   for output and interpolation of input fields onto model grid)
o fix radius in mom_v_metric_cylinder.F (wrong by dy/2).
   Affects results of exp. rotating_tank ; update output.txt.


Revision 1.512 - (view) (download) (annotate) - [select for diffs]
Mon Jul 11 20:32:19 2005 UTC (18 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.511: +2 -2 lines
Diff to previous 1.511
update the previous comment.


Revision 1.511 - (view) (download) (annotate) - [select for diffs]
Sun Jul 10 01:30:46 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.510: +5 -2 lines
Diff to previous 1.510
o pkg/diagnostics: 2 new S/R to fill a diagnostics using a scaling factor
      and/or using a fraction-weight field.


Revision 1.510 - (view) (download) (annotate) - [select for diffs]
Wed Jul 6 02:13:52 2005 UTC (18 years, 8 months ago) by edhill
Branch: MAIN
Changes since 1.509: +4 -1 lines
Diff to previous 1.509
 o add mnc output capability to diagnostics/diagstat and update
   our cvsignore files for the ACSII output generated


Revision 1.509 - (view) (download) (annotate) - [select for diffs]
Sat Jul 2 16:13:50 2005 UTC (18 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57k_post
Changes since 1.508: +5 -1 lines
Diff to previous 1.508
Tagging c57k_post to provide tag for lab_sea with diagnostics


Revision 1.508 - (view) (download) (annotate) - [select for diffs]
Thu Jun 30 19:55:41 2005 UTC (18 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57j_post
Changes since 1.507: +15 -1 lines
Diff to previous 1.507
tagging checkpoint57j_post


Revision 1.507 - (view) (download) (annotate) - [select for diffs]
Tue Jun 28 02:40:01 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.506: +2 -1 lines
Diff to previous 1.506
o add matlab scripts for CS-grid vectors (in utils/cs_grid)


Revision 1.506 - (view) (download) (annotate) - [select for diffs]
Sun Jun 26 16:54:38 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.505: +3 -1 lines
Diff to previous 1.505
o diagnostics pkg: change pointers so that 1 diagnostic can be used
  several times with different frequencies.


Revision 1.505 - (view) (download) (annotate) - [select for diffs]
Fri Jun 24 04:36:53 2005 UTC (18 years, 8 months ago) by edhill
Branch: MAIN
Changes since 1.504: +6 -2 lines
Diff to previous 1.504
 o mnc-ify the thsice package as requested by Daniel Enderton
   - the monitor--MNC output needs work
   - many attributes need to be added (most are currently blank)
   - does not break testreport (at least on IA32)


Revision 1.504 - (view) (download) (annotate) - [select for diffs]
Thu Jun 23 20:02:49 2005 UTC (18 years, 8 months ago) by edhill
Branch: MAIN
Changes since 1.503: +2 -1 lines
Diff to previous 1.503
 o mnc-ify aim_v23 as requested by Daniel Enderton
   - sets sane default flags (unchanged behavior)
   - does not break aim.5l_cs or aim.5l_LatLon verification tests


Revision 1.503 - (view) (download) (annotate) - [select for diffs]
Wed Jun 22 00:51:05 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.502: +2 -1 lines
Diff to previous 1.502
o remove "groundAtK1" & "rkFac" (replaced by usingPCoords & -rkSign)


Revision 1.502 - (view) (download) (annotate) - [select for diffs]
Mon Jun 20 23:23:33 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.501: +2 -1 lines
Diff to previous 1.501
o add Sadourny like discretization to the 4th.O vorticity advection scheme


Revision 1.501 - (view) (download) (annotate) - [select for diffs]
Mon Jun 20 00:32:18 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.500: +3 -3 lines
Diff to previous 1.500
updated.


Revision 1.500 - (view) (download) (annotate) - [select for diffs]
Mon Jun 20 00:01:03 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.499: +4 -1 lines
Diff to previous 1.499
o fix bug in rStar code (calc_r_star.F) when used with topo/bathy.
  update output.txt from: aim.5l_cs (& .thSI), fizhi-gridalt-hs
     and global_ocean.cs32x15 (& .thsice).


Revision 1.499 - (view) (download) (annotate) - [select for diffs]
Sun Jun 19 22:22:41 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.498: +4 -1 lines
Diff to previous 1.498
o fix few little things to avoid floating error with -ftrapuv (ifort v9)
 (ini_spherical_polar_grid.F, calc_r_star.F, monitor/mon_surfcor.F)


Revision 1.498 - (view) (download) (annotate) - [select for diffs]
Sun Jun 19 19:43:16 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57i_post
Changes since 1.497: +2 -1 lines
Diff to previous 1.497
tag checkpoint57i_post


Revision 1.497 - (view) (download) (annotate) - [select for diffs]
Wed Jun 15 16:01:14 2005 UTC (18 years, 8 months ago) by molod
Branch: MAIN
Changes since 1.496: +3 -1 lines
Diff to previous 1.496
Changes in diagnostics package behavior


Revision 1.496 - (view) (download) (annotate) - [select for diffs]
Thu Jun 9 17:51:34 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.495: +3 -1 lines
Diff to previous 1.495
o momentum advection (VI form) options: activate 4th.O vorticity Coriolis ;
  add 1rst Order upwind vertical Shear.


Revision 1.495 - (view) (download) (annotate) - [select for diffs]
Thu Jun 9 16:38:24 2005 UTC (18 years, 9 months ago) by edhill
Branch: MAIN
Changes since 1.494: +2 -1 lines
Diff to previous 1.494
 o add a quick fix for A/B checkpointing in OFFLINE mode


Revision 1.494 - (view) (download) (annotate) - [select for diffs]
Tue Jun 7 20:52:42 2005 UTC (18 years, 9 months ago) by edhill
Branch: MAIN
Changes since 1.493: +3 -1 lines
Diff to previous 1.493
 o add IGNORE_TIME define and -ignore_time option to genmake2 as an
   end-run around the C/Fortran linking horror in eesup/src/timers.F


Revision 1.493 - (view) (download) (annotate) - [select for diffs]
Tue May 31 18:27:24 2005 UTC (18 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.492: +3 -1 lines
Diff to previous 1.492
Logged addition of pkg/runclock and nh_am2


Revision 1.492 - (view) (download) (annotate) - [select for diffs]
Mon May 30 07:41:45 2005 UTC (18 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.491: +3 -1 lines
Diff to previous 1.491
added a few "_d 0" and D0 (in PARAMETER statements) in a desperate
effort to make vermix.my82 pass on a Sun, unfortunately no success;
but for cleaner code I check it in anyway.


Revision 1.491 - (view) (download) (annotate) - [select for diffs]
Wed May 25 04:03:09 2005 UTC (18 years, 9 months ago) by edhill
Branch: MAIN
Changes since 1.490: +3 -1 lines
Diff to previous 1.490
 o for mnc output, fill the 'T' coordinate var with myTime and create a
   separate 'iter' variable for iteration count


Revision 1.490 - (view) (download) (annotate) - [select for diffs]
Mon May 23 03:08:58 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.489: +4 -2 lines
Diff to previous 1.489
o pkg/diagnostics: Global statistics tested against monitor output.
o make seaice-pkg I/O type flags (MNC/MDS) more standard.


Revision 1.489 - (view) (download) (annotate) - [select for diffs]
Fri May 20 07:53:21 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.488: +4 -1 lines
Diff to previous 1.488
o pkg/diagnostics:
  add new capability: output of Global/Regional & per-level statistics


Revision 1.488 - (view) (download) (annotate) - [select for diffs]
Thu May 19 16:26:36 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57h_done
Changes since 1.487: +5 -1 lines
Diff to previous 1.487
checkpoint57h_done
  tag after changing user customized files (DIAGNOSTICS_SIZE.h,
  data.diagnostics, data.gchem, data.ptracers) is done.


Revision 1.487 - (view) (download) (annotate) - [select for diffs]
Thu May 19 04:10:44 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.486: +3 -1 lines
Diff to previous 1.486
o pkg/diagnostics: prepare for Global/Regional statistics.
  add 2nd namelist in data.diagnostics and update DIAGNOSTICS_SIZE.h


Revision 1.486 - (view) (download) (annotate) - [select for diffs]
Sun May 15 04:00:56 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.485: +4 -1 lines
Diff to previous 1.485
o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE
  and rename it: DIFFERENT_MULTIPLE


Revision 1.485 - (view) (download) (annotate) - [select for diffs]
Sat May 14 23:44:59 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57h_post
Changes since 1.484: +3 -1 lines
Diff to previous 1.484
checkpoint57h_post
o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers


Revision 1.484 - (view) (download) (annotate) - [select for diffs]
Sat May 14 21:15:47 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.483: +3 -1 lines
Diff to previous 1.483
o pkg/diagnostics: change output frequency, now in seconds (instead
  of Nb of iterations). This requires to change data.diagnostics.


Revision 1.483 - (view) (download) (annotate) - [select for diffs]
Thu May 12 21:59:51 2005 UTC (18 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57h_pre
Changes since 1.482: +3 -1 lines
Diff to previous 1.482
make a tag before changing diagnostic frequency.


Revision 1.482 - (view) (download) (annotate) - [select for diffs]
Wed May 11 00:43:04 2005 UTC (18 years, 9 months ago) by edhill
Branch: MAIN
Changes since 1.481: +3 -1 lines
Diff to previous 1.481
 o in mnc, let the user create the output dir if both mnc_outdir_date
   and mnc_outdir_num are false


Revision 1.481 - (view) (download) (annotate) - [select for diffs]
Mon May 2 21:24:12 2005 UTC (18 years, 10 months ago) by edhill
Branch: MAIN
Changes since 1.480: +3 -1 lines
Diff to previous 1.480
 o add fflags() to pkg/diagnostics which allows one to specify, on a
   per-file basis, the file precision [default behavior is unchanged]


Revision 1.480 - (view) (download) (annotate) - [select for diffs]
Fri Apr 29 18:47:02 2005 UTC (18 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.479: +4 -1 lines
Diff to previous 1.479
o added diagnostics to pkg/kpp, including computation of mixed layer
  depth based on a temperature/density criterion
o updated verification/natl_box to test the new pkg/kpp diagnostics


Revision 1.479 - (view) (download) (annotate) - [select for diffs]
Thu Apr 28 15:03:34 2005 UTC (18 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.478: +2 -1 lines
Diff to previous 1.478
o bugs fixed (with useAbsVorticity=T & with useJamartMomAdv=T)


Revision 1.478 - (view) (download) (annotate) - [select for diffs]
Mon Apr 25 23:25:54 2005 UTC (18 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.477: +2 -1 lines
Diff to previous 1.477
o test AB-3 code with 4th.Order advection scheme (advect_xy/input.ab3_c4)


Revision 1.477 - (view) (download) (annotate) - [select for diffs]
Sun Apr 17 00:25:45 2005 UTC (18 years, 10 months ago) by edhill
Branch: MAIN
Changes since 1.476: +4 -1 lines
Diff to previous 1.476
 o fix mnc flags in pkg/seaice so that they are "owned" by seaice,
   not mnc -- this mistake was found by JMC and is now corrected


Revision 1.476 - (view) (download) (annotate) - [select for diffs]
Fri Apr 15 16:10:59 2005 UTC (18 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57g_post
Changes since 1.475: +5 -1 lines
Diff to previous 1.475
checkpoint57g_post
o add Adams-Bashforth 3rd Order time stepping:
  - default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3)
  - not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ...


Revision 1.475 - (view) (download) (annotate) - [select for diffs]
Fri Apr 15 13:09:21 2005 UTC (18 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57g_pre
Changes since 1.474: +4 -1 lines
Diff to previous 1.474
tag checkpoint57g_pre before Adams-Bashforth-3


Revision 1.474 - (view) (download) (annotate) - [select for diffs]
Fri Apr 8 18:31:46 2005 UTC (18 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.473: +2 -2 lines
Diff to previous 1.473
checkpoint57e_pre (actually was tagged: eckpoint57e_pre)


Revision 1.473 - (view) (download) (annotate) - [select for diffs]
Thu Apr 7 23:40:07 2005 UTC (18 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.472: +6 -1 lines
Diff to previous 1.472
updating


Revision 1.472 - (view) (download) (annotate) - [select for diffs]
Wed Apr 6 20:19:34 2005 UTC (18 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.471: +4 -1 lines
Diff to previous 1.471
updating


Revision 1.471 - (view) (download) (annotate) - [select for diffs]
Wed Apr 6 19:52:57 2005 UTC (18 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57f_post
Changes since 1.470: +6 -1 lines
Diff to previous 1.470
checkpoint57f_post
o add parameter "baseTime" = model base time = time at iteration zero
  new function DIFF_BASE_MULTIPLE (replace DIFFERENT_MULTIPLE) to
  account for baseTime shift
o move Coriolis arrays from PARAMS.h to GRID.h


Revision 1.470 - (view) (download) (annotate) - [select for diffs]
Wed Apr 6 17:36:42 2005 UTC (18 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57f_pre
Changes since 1.469: +3 -1 lines
Diff to previous 1.469
checkpoint57f_pre


Revision 1.469 - (view) (download) (annotate) - [select for diffs]
Sun Apr 3 16:11:00 2005 UTC (18 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.468: +5 -1 lines
Diff to previous 1.468
updating


Revision 1.468 - (view) (download) (annotate) - [select for diffs]
Sun Apr 3 05:16:43 2005 UTC (18 years, 11 months ago) by edhill
Branch: MAIN
Changes since 1.467: +2 -1 lines
Diff to previous 1.467
 o mnc-ifying the seaice package


Revision 1.467 - (view) (download) (annotate) - [select for diffs]
Mon Mar 28 15:48:14 2005 UTC (18 years, 11 months ago) by adcroft
Branch: MAIN
Changes since 1.466: +3 -1 lines
Diff to previous 1.466
Alternative length scale calculation in mom_vi_hdissip.F


Revision 1.466 - (view) (download) (annotate) - [select for diffs]
Fri Mar 25 00:30:46 2005 UTC (18 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.465: +2 -1 lines
Diff to previous 1.465
updating


Revision 1.465 - (view) (download) (annotate) - [select for diffs]
Thu Mar 24 14:51:34 2005 UTC (18 years, 11 months ago) by baylor
Branch: MAIN
Changes since 1.464: +5 -1 lines
Diff to previous 1.464
Add tag on LeithD.


Revision 1.464 - (view) (download) (annotate) - [select for diffs]
Thu Mar 3 15:16:28 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.463: +3 -1 lines
Diff to previous 1.463
o add "d0" in getcon.F to reduce differences between compilers/platforms
  update output.txt of exp. fizhi-gridalt-hs


Revision 1.463 - (view) (download) (annotate) - [select for diffs]
Tue Mar 1 16:54:32 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.462: +2 -1 lines
Diff to previous 1.462
o change port_rand funtion to allow to set the seed.


Revision 1.462 - (view) (download) (annotate) - [select for diffs]
Mon Feb 28 17:53:29 2005 UTC (19 years ago) by edhill
Branch: MAIN
CVS Tags: checkpoint57e_post
Changes since 1.461: +5 -1 lines
Diff to previous 1.461
 o fix obscure MNC bug involving conversion between reals and integers
   - it caused no problems with certain (eg. gcc, ifc) compilers but the
     new version is now more standards-compliant


Revision 1.461 - (view) (download) (annotate) - [select for diffs]
Mon Feb 28 17:47:35 2005 UTC (19 years ago) by heimbach
Branch: MAIN
Changes since 1.460: +4 -3 lines
Diff to previous 1.460
updating


Revision 1.460 - (view) (download) (annotate) - [select for diffs]
Mon Feb 28 17:19:47 2005 UTC (19 years ago) by heimbach
Branch: MAIN
CVS Tags: eckpoint57e_pre
Changes since 1.459: +4 -1 lines
Diff to previous 1.459
updating


Revision 1.459 - (view) (download) (annotate) - [select for diffs]
Thu Feb 24 16:57:42 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.458: +3 -1 lines
Diff to previous 1.458
o fizhi pkg: fix AtoC and CtoA when called with same input & output array
  update output.txt of exp. fizhi-gridalt-hs


Revision 1.458 - (view) (download) (annotate) - [select for diffs]
Wed Feb 23 05:17:36 2005 UTC (19 years ago) by edhill
Branch: MAIN
Changes since 1.457: +3 -1 lines
Diff to previous 1.457
 o add more "Z" dimensions and associated coordinate vars to MNC


Revision 1.457 - (view) (download) (annotate) - [select for diffs]
Mon Feb 21 05:34:17 2005 UTC (19 years ago) by dimitri
Branch: MAIN
Changes since 1.456: +2 -1 lines
Diff to previous 1.456
o pkg/exf: added twoDigitYear capability for option useExfYearlyFields


Revision 1.456 - (view) (download) (annotate) - [select for diffs]
Sun Feb 20 11:46:24 2005 UTC (19 years ago) by dimitri
Branch: MAIN
Changes since 1.455: +5 -2 lines
Diff to previous 1.455
o parameter calendarDumps: when set, approximate months (30-31 days) and years
  (360-372 days) for parameters chkPtFreq, pChkPtFreq, taveFreq, SEAICE_taveFreq,
  KPP_taveFreq, and freq in pkg/diagnostics are converted to exact calendar
  months and years.  Requires pkg/cal.


Revision 1.455 - (view) (download) (annotate) - [select for diffs]
Sun Feb 20 04:31:54 2005 UTC (19 years ago) by edhill
Branch: MAIN
Changes since 1.454: +4 -1 lines
Diff to previous 1.454
 o diagnostics: add pickup functionality
   - off by default for backwards compatibility
   - current version only uses MDSIO -- MNC will be added


Revision 1.454 - (view) (download) (annotate) - [select for diffs]
Tue Feb 15 02:24:27 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.453: +2 -2 lines
Diff to previous 1.453
updated (Shapiro tendency diagnostics)


Revision 1.453 - (view) (download) (annotate) - [select for diffs]
Mon Feb 14 01:03:06 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.452: +2 -1 lines
Diff to previous 1.452
o allow to use pkg diagnostics for LAND pkg output.


Revision 1.452 - (view) (download) (annotate) - [select for diffs]
Sat Feb 12 23:13:27 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.451: +3 -1 lines
Diff to previous 1.451
o pkg/shap_filt: fix for multi-tiles per face (CS-grid with EXCH2)


Revision 1.451 - (view) (download) (annotate) - [select for diffs]
Fri Feb 11 20:41:30 2005 UTC (19 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57d_post
Changes since 1.450: +3 -1 lines
Diff to previous 1.450
checkpoint57d_post
o pkg/thsice used in the ocean: fix tile Pb related to sIceLoad forcing


Revision 1.450 - (view) (download) (annotate) - [select for diffs]
Thu Feb 10 16:45:53 2005 UTC (19 years ago) by edhill
Branch: MAIN
Changes since 1.449: +3 -1 lines
Diff to previous 1.449
 o modify verification/ideal_2D_oce so that it tests the creation of mnc
   output from the diagnostics package


Revision 1.449 - (view) (download) (annotate) - [select for diffs]
Wed Feb 9 23:45:41 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.448: +2 -1 lines
Diff to previous 1.448
o temporary fix in EXCH2_UV: add a 3rd call to fix the 24.tiles CS-grid set-up


Revision 1.448 - (view) (download) (annotate) - [select for diffs]
Wed Feb 9 17:34:19 2005 UTC (19 years ago) by edhill
Branch: MAIN
Changes since 1.447: +3 -1 lines
Diff to previous 1.447
 o make genmake2 more portable by using ".$FS" instead of ".f" for more
   of the test compilations (eg. IBM xlf on Mac OSX w/HFS filesys)


Revision 1.447 - (view) (download) (annotate) - [select for diffs]
Tue Feb 8 20:39:58 2005 UTC (19 years ago) by edhill
Branch: MAIN
Changes since 1.446: +2 -1 lines
Diff to previous 1.446
 o add coordinate variables to the MNC output from the diagnostics package


Revision 1.446 - (view) (download) (annotate) - [select for diffs]
Tue Feb 8 18:07:26 2005 UTC (19 years ago) by jmc
Branch: MAIN
Changes since 1.445: +2 -1 lines
Diff to previous 1.445
o change MNC-flags default value: true when useMNC=TRUE


Revision 1.445 - (view) (download) (annotate) - [select for diffs]
Mon Feb 7 19:42:04 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.444: +2 -1 lines
Diff to previous 1.444
o lab_sea: use LSR_ERROR=1.E-12 for testing ; update output.txt


Revision 1.444 - (view) (download) (annotate) - [select for diffs]
Mon Feb 7 18:37:19 2005 UTC (19 years, 1 month ago) by edhill
Branch: MAIN
Changes since 1.443: +3 -1 lines
Diff to previous 1.443
 o add a "readgrid_mnc" flag to MNC and give model/src/ini_curvilinear_grid.F
   the ability (off by default) to read the grid information using MNC


Revision 1.443 - (view) (download) (annotate) - [select for diffs]
Mon Feb 7 03:49:59 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.442: +2 -1 lines
Diff to previous 1.442
o diagnostics: fix a bug (sub-set of levels); keep full precision when averaging


Revision 1.442 - (view) (download) (annotate) - [select for diffs]
Sun Feb 6 23:23:00 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.441: +3 -1 lines
Diff to previous 1.441
o do snap-shot diagnostics at the middle of the time-interval (instead of
  at the end).


Revision 1.441 - (view) (download) (annotate) - [select for diffs]
Wed Feb 2 20:20:09 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.440: +3 -1 lines
Diff to previous 1.440
o update exp. aim.5l_cs (use default LAND_OPTIONS.h file) and add
  new test for AIM with thSIce + slab-ocean


Revision 1.440 - (view) (download) (annotate) - [select for diffs]
Tue Feb 1 23:27:34 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.439: +2 -1 lines
Diff to previous 1.439
o cpl_aim+ocn test: update output (optfile & default GMREDI_OPTIONS.h)


Revision 1.439 - (view) (download) (annotate) - [select for diffs]
Fri Jan 28 01:32:09 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.438: +5 -1 lines
Diff to previous 1.438
o move state variable diagnostics to the beginning of the time step ;
  (note: still needs some work specially for snap-shot diagnostics)
  duplicate & replace UVELVVEL diagnostics with UV_VEL_C & UV_VEL_Z


Revision 1.438 - (view) (download) (annotate) - [select for diffs]
Thu Jan 27 17:37:28 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57c_post
Changes since 1.437: +4 -1 lines
Diff to previous 1.437
checkpoint57c_post
o Change testing option (-ieee) to get closer agreement between g77 & ifort
o generate new output.txt files on faulks with g77 & the new -ieee option


Revision 1.437 - (view) (download) (annotate) - [select for diffs]
Thu Jan 27 14:11:44 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57c_pre
Changes since 1.436: +4 -2 lines
Diff to previous 1.436
tag before changing default testing option with g77


Revision 1.436 - (view) (download) (annotate) - [select for diffs]
Wed Jan 26 00:20:49 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.435: +3 -1 lines
Diff to previous 1.435
o add "_d 0" in freeze ; change some "FLOAT" to "DFLOAT";
  update output.txt of exp. global_ocean.90x40x15


Revision 1.435 - (view) (download) (annotate) - [select for diffs]
Wed Jan 19 02:21:28 2005 UTC (19 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.434: +3 -1 lines
Diff to previous 1.434
o fix in ini_eos.F (one "_d 0" was missing): now g77 & ifc give much closer
  results; update global_ocean_pressure & global_ocean.cs32x15 output.txt


Revision 1.434 - (view) (download) (annotate) - [select for diffs]
Thu Jan 13 00:59:53 2005 UTC (19 years, 1 month ago) by heimbach
Branch: MAIN
Changes since 1.433: +10 -3 lines
Diff to previous 1.433
updating


Revision 1.433 - (view) (download) (annotate) - [select for diffs]
Tue Jan 4 22:08:07 2005 UTC (19 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.432: +3 -1 lines
Diff to previous 1.432
updating


Revision 1.432 - (view) (download) (annotate) - [select for diffs]
Tue Jan 4 17:20:17 2005 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.431: +2 -1 lines
Diff to previous 1.431
add saltFlux(+File) forcing capability with periodicExternalForcing


Revision 1.431 - (view) (download) (annotate) - [select for diffs]
Tue Jan 4 02:27:36 2005 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.430: +3 -1 lines
Diff to previous 1.430
o allow to use pkg diagnostics for GM-Redi & ThSIce output
o diagnostics_fill: fill-in up to sNx+1 or sNy+1 (if U,V or Z pt) for mnc.


Revision 1.430 - (view) (download) (annotate) - [select for diffs]
Wed Dec 29 02:13:38 2004 UTC (19 years, 2 months ago) by edhill
Branch: MAIN
Changes since 1.429: +7 -1 lines
Diff to previous 1.429
o improvements for the MNC output from DIAGNOSTICS:
  - correct handling of the unlimitied dimension
  - all dims now have associated coordinate variables
  - variables located at U, V, and Corner ("Z") points are now written
    with the correct horzontal dimensions (eg. 'Xp1', 'Yp1') so that
    *all* data points are output


Revision 1.429 - (view) (download) (annotate) - [select for diffs]
Mon Dec 27 20:34:11 2004 UTC (19 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.428: +2 -1 lines
Diff to previous 1.428
o added seaice_summary.F and removed obsolete ALLOW_SEAICE's from pkg/seaice


Revision 1.428 - (view) (download) (annotate) - [select for diffs]
Thu Dec 23 21:28:47 2004 UTC (19 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.427: +2 -1 lines
Diff to previous 1.427
o added pkg/seaice/seaice_monitor.F


Revision 1.427 - (view) (download) (annotate) - [select for diffs]
Wed Dec 22 07:27:07 2004 UTC (19 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.426: +2 -1 lines
Diff to previous 1.426
o mdsio_readfield.F can now read files visible only to master process


Revision 1.426 - (view) (download) (annotate) - [select for diffs]
Wed Dec 22 00:49:36 2004 UTC (19 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.425: +2 -1 lines
Diff to previous 1.425
o pkg/seaice: some test code for ice-modified ocean stress


Revision 1.425 - (view) (download) (annotate) - [select for diffs]
Mon Dec 20 23:32:52 2004 UTC (19 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.424: +6 -1 lines
Diff to previous 1.424
o exf_getffields interpolation defaults to bilinear for all scalar forcing
  fields (remains bicubic for wind velocity and stress).  This avoids, e.g.,
  spurious negative numbers for precipitation and humidity.  Will cause
  some small numerical differences for integrations using
  pkg/exf/exf_interp.F.


Revision 1.424 - (view) (download) (annotate) - [select for diffs]
Mon Dec 20 19:56:15 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57b_post
Changes since 1.423: +3 -1 lines
Diff to previous 1.423
checkpoint57b_post
o simplify options in diagnostics_fill arguments (remove weird combinations)


Revision 1.423 - (view) (download) (annotate) - [select for diffs]
Mon Dec 20 17:10:27 2004 UTC (19 years, 2 months ago) by edhill
Branch: MAIN
Changes since 1.422: +4 -1 lines
Diff to previous 1.422
o fix MNC coordinate variables so that they now contain per-face index
  values (instead of xC,xG,yC,yG values) when run with EXCH2 since, in
  general, EXCH2 grids are only aligned to a "local" coordinate system


Revision 1.422 - (view) (download) (annotate) - [select for diffs]
Mon Dec 20 02:42:42 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.421: +5 -1 lines
Diff to previous 1.421
o test diagnostics pkg in dic_example (no output) and ideal_2D_oce (with ouput)
o Implement instantaneous output within pkg diagnostics:
  setting a negative frequency in data.diagnostics produces
 "snap-shot" output (as opposed to time-average if freq > 0)


Revision 1.421 - (view) (download) (annotate) - [select for diffs]
Sun Dec 19 00:59:16 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.420: +4 -1 lines
Diff to previous 1.420
o move out off EQUIVALENCE all diagnostics that fizhi does not use ;
  NOTE: change ptracer diagnostics name: use 2 characters to work with
        more than 9 tracers. Add also diagnostics of advect & diffus flux.


Revision 1.420 - (view) (download) (annotate) - [select for diffs]
Sat Dec 18 02:18:59 2004 UTC (19 years, 2 months ago) by edhill
Branch: MAIN
Changes since 1.419: +3 -1 lines
Diff to previous 1.419
o more CF compliance: convert all MNC 'iter' variables to 'T' so that it
  becomes the coordinate variable for the 'T' dimension


Revision 1.419 - (view) (download) (annotate) - [select for diffs]
Fri Dec 17 21:28:26 2004 UTC (19 years, 2 months ago) by edhill
Branch: MAIN
Changes since 1.418: +4 -1 lines
Diff to previous 1.418
 o add CF-style coordinate variables to MNC
   - just a first cut:  numbers are meaningless on the cubesphere and
     missing along the T axis but otherwise it works!


Revision 1.418 - (view) (download) (annotate) - [select for diffs]
Fri Dec 17 19:17:56 2004 UTC (19 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.417: +2 -1 lines
Diff to previous 1.417
o add surface flux diagnostics: TAUX, TAUY, TFLUX, TRELAX, TICE, SFLUX, SRELAX


Revision 1.417 - (view) (download) (annotate) - [select for diffs]
Fri Dec 17 05:03:43 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.416: +2 -1 lines
Diff to previous 1.416
o pkg/thSIce: read initial state from 6 files ; allow monitor to use MNC.


Revision 1.416 - (view) (download) (annotate) - [select for diffs]
Fri Dec 17 00:52:42 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.415: +5 -1 lines
Diff to previous 1.415
o add diagnostics of advective & diffusive flux for T & S (pTracers coming soon)
  this is based directly on what the model compute, so that the content of
  each diagnostics might be affected by switching options (e.g., implicitDiffusion)
o small changes for diagnostics (gad_biharm_?.F, arguments of S/R impldiff.F)


Revision 1.415 - (view) (download) (annotate) - [select for diffs]
Thu Dec 16 14:27:40 2004 UTC (19 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.414: +6 -3 lines
Diff to previous 1.414
o updating


Revision 1.414 - (view) (download) (annotate) - [select for diffs]
Thu Dec 16 08:31:42 2004 UTC (19 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.413: +3 -1 lines
Diff to previous 1.413
o updating


Revision 1.413 - (view) (download) (annotate) - [select for diffs]
Tue Dec 14 23:00:53 2004 UTC (19 years, 2 months ago) by edhill
Branch: MAIN
Changes since 1.412: +9 -1 lines
Diff to previous 1.412
o changes per discussion of AM, JMC, & EH3 today:
  - move redundant "grid" variables out of "state" -- in preparation of
    creating proper CF-style coordinate variables and in recognition
    that any/all grid variables can be easily copied (eg. w/NCO) from
    the grid files into any of the other NetCDF files
  - *always* output grid variables with MDSIO (this will eventually be
    changed)
  - output MNC grid file if useMNC is true


Revision 1.412 - (view) (download) (annotate) - [select for diffs]
Tue Dec 14 16:54:08 2004 UTC (19 years, 2 months ago) by edhill
Branch: MAIN
Changes since 1.411: +5 -1 lines
Diff to previous 1.411
 o every instance of _END_MASTER() has been found and replaced with
   _END_MASTER( myThid ) in order to satisfy certain picky Sun
   preprocessors


Revision 1.411 - (view) (download) (annotate) - [select for diffs]
Mon Dec 13 23:12:03 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.410: +7 -1 lines
Diff to previous 1.410
 re-arrange diagnostics pkg initialisation:
 - allow each package to extend the available diagnostics list
 - add some checking and fix small problems (multi-threaded, ...)
 - new S/R diagnostics_fill (replace fill_diagnostics):
   look through the short list of active diag. (instead of the long list)
   create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active


Revision 1.410 - (view) (download) (annotate) - [select for diffs]
Fri Dec 10 20:17:38 2004 UTC (19 years, 2 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57a_post
Changes since 1.409: +6 -1 lines
Diff to previous 1.409
close bracket


Revision 1.409 - (view) (download) (annotate) - [select for diffs]
Fri Dec 10 20:10:46 2004 UTC (19 years, 2 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint57a_pre
Changes since 1.408: +5 -1 lines
Diff to previous 1.408
Open bracket for TAMC-related changes


Revision 1.408 - (view) (download) (annotate) - [select for diffs]
Thu Dec 9 17:41:09 2004 UTC (19 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint57
Changes since 1.407: +2 -1 lines
Diff to previous 1.407
checkpoint57


Revision 1.407 - (view) (download) (annotate) - [select for diffs]
Thu Dec 9 15:37:25 2004 UTC (19 years, 2 months ago) by heimbach
Branch: MAIN
Changes since 1.406: +3 -1 lines
Diff to previous 1.406
updating


Revision 1.406 - (view) (download) (annotate) - [select for diffs]
Thu Dec 9 09:03:32 2004 UTC (19 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.405: +5 -1 lines
Diff to previous 1.405
o updating


Revision 1.405 - (view) (download) (annotate) - [select for diffs]
Mon Dec 6 06:08:24 2004 UTC (19 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.404: +2 -1 lines
Diff to previous 1.404
- switch back to "sflux = sflux - runoff" in exf_getforcing.F
- use bilinear instead of bicubic interpolation for runoff, to
  avoid negative numbers.


Revision 1.404 - (view) (download) (annotate) - [select for diffs]
Sun Dec 5 23:29:56 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.403: +2 -1 lines
Diff to previous 1.403
o implement Implicit Vertical advection for pTracers


Revision 1.403 - (view) (download) (annotate) - [select for diffs]
Sat Dec 4 23:26:49 2004 UTC (19 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.402: +5 -1 lines
Diff to previous 1.402
updating


Revision 1.402 - (view) (download) (annotate) - [select for diffs]
Sat Dec 4 18:52:28 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.401: +2 -2 lines
Diff to previous 1.401
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k)
  (implemented also for implicit vertical diffusion & advection)


Revision 1.401 - (view) (download) (annotate) - [select for diffs]
Sat Dec 4 00:24:17 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.400: +3 -1 lines
Diff to previous 1.400
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k)
  (not yet implemented for implicit vertical diffusion & advection)


Revision 1.400 - (view) (download) (annotate) - [select for diffs]
Fri Dec 3 16:47:45 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.399: +4 -1 lines
Diff to previous 1.399
o updating


Revision 1.399 - (view) (download) (annotate) - [select for diffs]
Fri Dec 3 01:09:51 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint56c_post
Changes since 1.398: +19 -1 lines
Diff to previous 1.398
o updating


Revision 1.398 - (view) (download) (annotate) - [select for diffs]
Wed Dec 1 23:11:21 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint56b_post
Changes since 1.397: +2 -1 lines
Diff to previous 1.397
o updating


Revision 1.397 - (view) (download) (annotate) - [select for diffs]
Wed Dec 1 22:54:42 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.396: +6 -1 lines
Diff to previous 1.396
o updating


Revision 1.396 - (view) (download) (annotate) - [select for diffs]
Mon Nov 29 22:50:47 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.395: +4 -1 lines
Diff to previous 1.395
o updating


Revision 1.395 - (view) (download) (annotate) - [select for diffs]
Mon Nov 29 20:30:52 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.394: +7 -1 lines
Diff to previous 1.394
o updating


Revision 1.394 - (view) (download) (annotate) - [select for diffs]
Sun Nov 28 23:54:20 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint56a_post
Changes since 1.393: +20 -2 lines
Diff to previous 1.393
o document changes (hopefully), to be done: regenerate dic_example
  output, because it was wrong, and check in an example that test the cfc-pkg.


Revision 1.393 - (view) (download) (annotate) - [select for diffs]
Tue Nov 23 21:25:24 2004 UTC (19 years, 3 months ago) by edhill
Branch: MAIN
Changes since 1.392: +2 -1 lines
Diff to previous 1.392
 o add PTRACERS (PTR0[1-5]) to testreport output


Revision 1.392 - (view) (download) (annotate) - [select for diffs]
Tue Nov 23 20:22:12 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.391: +10 -1 lines
Diff to previous 1.391
o updating


Revision 1.391 - (view) (download) (annotate) - [select for diffs]
Mon Nov 22 21:12:48 2004 UTC (19 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.390: +8 -1 lines
Diff to previous 1.390
updating


Revision 1.390 - (view) (download) (annotate) - [select for diffs]
Sun Nov 21 22:22:31 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.389: +5 -1 lines
Diff to previous 1.389
o GMredi:
  - fix ldd97 slope limit ; extend valid domain of Psi-Bolus ;
  - change S/R GRAD_SIGMA to be valid in the overlap on CS-grid.
  - change the default GMREDI_OPTIONS.h: compile everything except Visbeck


Revision 1.389 - (view) (download) (annotate) - [select for diffs]
Fri Nov 19 13:55:26 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.388: +2 -1 lines
Diff to previous 1.388
o small cleaning of exch2: remove files that are also in eesupp/src


Revision 1.388 - (view) (download) (annotate) - [select for diffs]
Fri Nov 19 01:35:33 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.387: +5 -3 lines
Diff to previous 1.387
o updating


Revision 1.387 - (view) (download) (annotate) - [select for diffs]
Thu Nov 18 23:30:46 2004 UTC (19 years, 3 months ago) by mlosch
Branch: MAIN
Changes since 1.386: +4 -1 lines
Diff to previous 1.386
o GCHEM: move call to GCHEM_FORCING_SEP, so that it is now called before
  the blocking exchanges to avoid computing halos in GCHEM_FORCING_SEP


Revision 1.386 - (view) (download) (annotate) - [select for diffs]
Wed Nov 17 04:18:45 2004 UTC (19 years, 3 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint56
Changes since 1.385: +28 -1 lines
Diff to previous 1.385
updating and tagging


Revision 1.385 - (view) (download) (annotate) - [select for diffs]
Tue Nov 16 14:33:11 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.384: +2 -1 lines
Diff to previous 1.384
o AIM: read land-Fraction earlier (from ini-fixed) and monitor land at nIter0


Revision 1.384 - (view) (download) (annotate) - [select for diffs]
Sun Nov 14 03:36:51 2004 UTC (19 years, 3 months ago) by edhill
Branch: MAIN
Changes since 1.383: +3 -1 lines
Diff to previous 1.383
 o cleanup full files


Revision 1.383 - (view) (download) (annotate) - [select for diffs]
Wed Nov 10 19:36:30 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint55j_post
Changes since 1.382: +2 -1 lines
Diff to previous 1.382
checkpoint55j_post


Revision 1.382 - (view) (download) (annotate) - [select for diffs]
Wed Nov 10 03:10:00 2004 UTC (19 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.381: +3 -1 lines
Diff to previous 1.381
o isolate dissipation tendency (allow to keep it out off AB) in V.I form.
  affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice)


Revision 1.381 - (view) (download) (annotate) - [select for diffs]
Thu Nov 4 20:19:17 2004 UTC (19 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.380: +3 -1 lines
Diff to previous 1.380
 o add build dirs


Revision 1.380 - (view) (download) (annotate) - [select for diffs]
Tue Nov 2 23:57:29 2004 UTC (19 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.379: +2 -2 lines
Diff to previous 1.379
o added viscA4GridMin and viscA4GridMax for more control on biharmonic viscosity


Revision 1.379 - (view) (download) (annotate) - [select for diffs]
Tue Nov 2 19:09:55 2004 UTC (19 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.378: +4 -1 lines
Diff to previous 1.378
 o make all subroutines 30 or less characters in length for certain older
   compilers to work


Revision 1.378 - (view) (download) (annotate) - [select for diffs]
Tue Nov 2 01:20:04 2004 UTC (19 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.377: +4 -1 lines
Diff to previous 1.377
o allow (vecinv only) a different horiz. viscosity for Divergence and Vorticity;
  affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice)


Revision 1.377 - (view) (download) (annotate) - [select for diffs]
Thu Oct 28 01:23:50 2004 UTC (19 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint55i_post
Changes since 1.376: +2 -2 lines
Diff to previous 1.376
was supposed to be checkpoint55i_post (instead of g)


Revision 1.376 - (view) (download) (annotate) - [select for diffs]
Thu Oct 28 01:22:02 2004 UTC (19 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.375: +4 -1 lines
Diff to previous 1.375
checkpoint55g_post
o change arrays for total vertical diffusivity (2.D if explicit,
  3.D if implicit) ; each ptracer uses its own background value.


Revision 1.375 - (view) (download) (annotate) - [select for diffs]
Wed Oct 27 23:33:33 2004 UTC (19 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.374: +5 -1 lines
Diff to previous 1.374
 o add comments about ocn_compon_interf, mnc, and ITRDA


Revision 1.374 - (view) (download) (annotate) - [select for diffs]
Thu Oct 21 21:14:02 2004 UTC (19 years, 4 months ago) by afe
Branch: MAIN
Changes since 1.373: +3 -2 lines
Diff to previous 1.373
fixed wayward endif in mom_fluxform that messed up cyclindrical configuration


Revision 1.373 - (view) (download) (annotate) - [select for diffs]
Thu Oct 21 13:38:45 2004 UTC (19 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.372: +6 -1 lines
Diff to previous 1.372
 o give MNC the ability to create additional files rather than
   exceeding a specified file size limit
   - run-time configurable (in data.mnc) as "MNC_MAX_FSIZE"
   - the default is just less than 2GB which is a practical limit
     on many systems (eg. Baylor's and Helen's recent problems)
   - tested and works on Linux/g77 -- needs testing elsewhere


Revision 1.372 - (view) (download) (annotate) - [select for diffs]
Wed Oct 20 21:59:35 2004 UTC (19 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.371: +3 -1 lines
Diff to previous 1.371
Compute the non-local term using either KPP vertical diffusivity (default)
         or the total vertical diffusivity (when KPP_ghatUseTotalDiffus=T)


Revision 1.371 - (view) (download) (annotate) - [select for diffs]
Wed Oct 20 14:59:23 2004 UTC (19 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint55h_post
Changes since 1.370: +5 -1 lines
Diff to previous 1.370
checkpoint55h_post
 o add verification test "vermix"
 o call PACKAGE_BOOT & PACKAGES_READPARMS just after INI_PARMS
 o useMNC moved from data.mnc to data.pkg


Revision 1.370 - (view) (download) (annotate) - [select for diffs]
Mon Oct 18 16:04:19 2004 UTC (19 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.369: +3 -1 lines
Diff to previous 1.369
 o remove all the *_ioinc flags and replace them with the single global
   outputTypesInclusive flag


Revision 1.369 - (view) (download) (annotate) - [select for diffs]
Sun Oct 17 23:29:14 2004 UTC (19 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.368: +3 -1 lines
Diff to previous 1.368
o allow to set a vertical profile of vertical diffusivity for T & S


Revision 1.368 - (view) (download) (annotate) - [select for diffs]
Thu Oct 14 06:00:06 2004 UTC (19 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint55g_post
Changes since 1.367: +11 -1 lines
Diff to previous 1.367
sorry, yet another tag, checkpoint55g_post


Revision 1.367 - (view) (download) (annotate) - [select for diffs]
Wed Oct 13 21:49:05 2004 UTC (19 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint55f_post
Changes since 1.366: +4 -1 lines
Diff to previous 1.366
 o checkpoint55f_post


Revision 1.366 - (view) (download) (annotate) - [select for diffs]
Wed Oct 13 07:09:15 2004 UTC (19 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint55e_post
Changes since 1.365: +9 -1 lines
Diff to previous 1.365
o some delicate re-shuffle of store directives to avoid one
  extra call of do_oceanic_physics
o NB: this may break global_ocean adjoint temporarily,
  but it is clear how to fix it. Will do later, need this now.


Revision 1.365 - (view) (download) (annotate) - [select for diffs]
Mon Oct 11 16:42:30 2004 UTC (19 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint55d_post
Changes since 1.364: +11 -1 lines
Diff to previous 1.364
updating


Revision 1.364 - (view) (download) (annotate) - [select for diffs]
Fri Oct 8 17:03:43 2004 UTC (19 years, 5 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint55d_pre
Changes since 1.363: +7 -1 lines
Diff to previous 1.363
 o add ability of MNC to write local and "partial" (eg. 2D slices where
   the full 3D field is never actually stored) arrays to NetCDF files
   with the correct (that is, the complete multi-dimensional) set of
   array indicies
   - used in mom_vecinv() to write the diagFreq output
   - tested (demonstrated) in verification/aim.5l_cs


Revision 1.363 - (view) (download) (annotate) - [select for diffs]
Thu Oct 7 19:31:14 2004 UTC (19 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.362: +5 -1 lines
Diff to previous 1.362
 o further mnc-ification
   - add kpp to mnc output (both snapshot and timeave)
   - add verification/lab_sea to the list with mnc setups
 o reformat files for ProTeX


Revision 1.362 - (view) (download) (annotate) - [select for diffs]
Fri Oct 1 16:15:29 2004 UTC (19 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.361: +8 -1 lines
Diff to previous 1.361
o non-hydrostatic code:
  - add new parameter viscAhW, replaces viscAh in calc_gw, defaults to
    viscAh. Useful when viscAh=0 in non-hydrostatic simulations


Revision 1.361 - (view) (download) (annotate) - [select for diffs]
Wed Sep 29 12:27:09 2004 UTC (19 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.360: +2 -1 lines
Diff to previous 1.360
o fixed about 35 bugs


Revision 1.360 - (view) (download) (annotate) - [select for diffs]
Mon Sep 27 18:01:22 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
Changes since 1.359: +4 -1 lines
Diff to previous 1.359
extend simple cost functions to treat time mean quantities
o cost_tile called from forward_step
o cost_accumulate_state called from cost_tile


Revision 1.359 - (view) (download) (annotate) - [select for diffs]
Mon Sep 27 14:56:42 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
Changes since 1.358: +2 -1 lines
Diff to previous 1.358
modified argument list of CALL OBCS_CALC to myTime+deltaTclock


Revision 1.358 - (view) (download) (annotate) - [select for diffs]
Mon Sep 27 14:54:35 2004 UTC (19 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.357: +4 -1 lines
Diff to previous 1.357
o multidimAdvection on CS-grid: implement the full 3 pass ; overlap needs to
    be 2 times larger than the minimum size the advection scheme requires.
    now get a perfect conservation of salt in advect_cs test-exp (updated)


Revision 1.357 - (view) (download) (annotate) - [select for diffs]
Mon Sep 27 09:01:16 2004 UTC (19 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.356: +3 -1 lines
Diff to previous 1.356
o updating


Revision 1.356 - (view) (download) (annotate) - [select for diffs]
Mon Sep 27 08:02:05 2004 UTC (19 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.355: +11 -1 lines
Diff to previous 1.355
  - add horizontal diffusion of TKE, requires exchanges in
    do_fields_blocking_exchanges, horizontal diffusivity is zero by
    default. In OPA there is no horizontal diffusion of TKE but the
    mixing coefficients are computed from a horizontal average of TKE of
    6 points or so. I think that diffusion has a little more physical
    justification.
  - clean up ggl90_calc in the hope of reducing memory usage (this hope
    was in vain)
  - mask tke-variable in ggl90_init


Revision 1.355 - (view) (download) (annotate) - [select for diffs]
Fri Sep 24 17:10:22 2004 UTC (19 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.354: +3 -1 lines
Diff to previous 1.354
o fix mask Pb in multidimAdvection on CS-grid (still a small Pb with ipass)
o fix biharmonic diffusion on CS-grid.


Revision 1.354 - (view) (download) (annotate) - [select for diffs]
Fri Sep 24 12:38:00 2004 UTC (19 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.353: +7 -1 lines
Diff to previous 1.353
o updating


Revision 1.353 - (view) (download) (annotate) - [select for diffs]
Thu Sep 23 17:48:23 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint55c_post
Changes since 1.352: +5 -1 lines
Diff to previous 1.352
Adding obcs exchanges for useOBCSprescribe


Revision 1.352 - (view) (download) (annotate) - [select for diffs]
Wed Sep 22 21:31:35 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
Changes since 1.351: +8 -1 lines
Diff to previous 1.351
updating obcs


Revision 1.351 - (view) (download) (annotate) - [select for diffs]
Wed Sep 22 21:19:44 2004 UTC (19 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.350: +4 -1 lines
Diff to previous 1.350
 o make the MNC_CW_ADD_VATTR_* subroutines all take scalar arguments
   which simplifies the calls and passes the ifc check-bounds test


Revision 1.350 - (view) (download) (annotate) - [select for diffs]
Wed Sep 22 15:55:24 2004 UTC (19 years, 5 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint55b_post
Changes since 1.349: +3 -1 lines
Diff to previous 1.349
checkpoint55b_post
o add a 2D scalar, Z location, exchange_2 routine.


Revision 1.349 - (view) (download) (annotate) - [select for diffs]
Tue Sep 21 23:20:17 2004 UTC (19 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.348: +5 -1 lines
Diff to previous 1.348
o EXCH_UV for CS-grid: add one u,v in the corner-halo region, allows
  to compute vorticity on a wider stencil [e.g., vort3(0,1)&(1,0)]
  affects advect_cs results (for the wrong reason): update output.txt


Revision 1.348 - (view) (download) (annotate) - [select for diffs]
Tue Sep 21 15:47:59 2004 UTC (19 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.347: +6 -1 lines
Diff to previous 1.347
o use a more standard discretization for biharmonic viscosity ;
 (original version still available with #define MOM_VI_ORIGINAL_VISCA4 )
  affects results of dome set-up: update output.txt
o fix gad_advection.F (CubedSphere part), back to version 1.23
o fix bug in mom_vi_del2uv.F (CubedSphere part).


Revision 1.347 - (view) (download) (annotate) - [select for diffs]
Mon Sep 20 23:22:57 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint55a_post
Changes since 1.346: +9 -1 lines
Diff to previous 1.346
o merged code to
  * prescribe/read time-dependent open boundaries
    (works in conjunction with exf, cal)
  * sponge layer code for open boundaries
  * each boundary N/S/E/W now has its own CPP option
    (healthy for the adjoint)


Revision 1.346 - (view) (download) (annotate) - [select for diffs]
Fri Sep 17 23:19:12 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint55
Changes since 1.345: +11 -1 lines
Diff to previous 1.345
sheduling c55 so that john can write more adjoint papers
without crediting the developers!


Revision 1.345 - (view) (download) (annotate) - [select for diffs]
Thu Sep 16 22:25:23 2004 UTC (19 years, 5 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint54f_post
Changes since 1.344: +6 -1 lines
Diff to previous 1.344
tagging checkpoint54f_post


Revision 1.344 - (view) (download) (annotate) - [select for diffs]
Thu Sep 16 12:40:37 2004 UTC (19 years, 5 months ago) by mlosch
Branch: MAIN
Changes since 1.343: +10 -1 lines
Diff to previous 1.343
o updating tag-index


Revision 1.343 - (view) (download) (annotate) - [select for diffs]
Fri Sep 10 12:26:41 2004 UTC (19 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.342: +11 -1 lines
Diff to previous 1.342
 o add comments about IO


Revision 1.342 - (view) (download) (annotate) - [select for diffs]
Wed Sep 8 18:02:29 2004 UTC (19 years, 6 months ago) by edhill
Branch: MAIN
Changes since 1.341: +3 -1 lines
Diff to previous 1.341
 o BUILD_INFO.h comment


Revision 1.341 - (view) (download) (annotate) - [select for diffs]
Thu Sep 2 09:21:55 2004 UTC (19 years, 6 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint54e_post
Changes since 1.340: +10 -1 lines
Diff to previous 1.340
o added two new packages
o create a new tag


Revision 1.340 - (view) (download) (annotate) - [select for diffs]
Wed Sep 1 16:57:12 2004 UTC (19 years, 6 months ago) by stephd
Branch: MAIN
Changes since 1.339: +2 -2 lines
Diff to previous 1.339
o add offline package


Revision 1.339 - (view) (download) (annotate) - [select for diffs]
Wed Sep 1 12:41:50 2004 UTC (19 years, 6 months ago) by edhill
Branch: MAIN
Changes since 1.338: +3 -1 lines
Diff to previous 1.338
 o add dic_example


Revision 1.338 - (view) (download) (annotate) - [select for diffs]
Fri Jul 30 14:31:40 2004 UTC (19 years, 7 months ago) by edhill
Branch: MAIN
Changes since 1.337: +4 -1 lines
Diff to previous 1.337
o genmake2: add ability to search for C compilers and cleanup test output
  - fixes recent SX-6 problems and should help with others (eg. HP-UX)


Revision 1.337 - (view) (download) (annotate) - [select for diffs]
Tue Jul 27 15:56:13 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint54d_post
Changes since 1.336: +5 -1 lines
Diff to previous 1.336
checkpoint54d_post
o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong,
  leading to additional shift by 5 days each year of integration
   (i.e. leading to considerable offset over the years)


Revision 1.336 - (view) (download) (annotate) - [select for diffs]
Tue Jul 27 14:55:23 2004 UTC (19 years, 7 months ago) by adcroft
Branch: MAIN
Changes since 1.335: +2 -1 lines
Diff to previous 1.335
Added feature:
 - if levels() is ommitted from namelists in data.diagnostics then ALL
   levels are diagnosed instead of none


Revision 1.335 - (view) (download) (annotate) - [select for diffs]
Tue Jul 27 00:44:10 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.334: +8 -1 lines
Diff to previous 1.334
o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep
o start with no AB and no initial filtering (staggerTimeStep):
  change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5
o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F
  (external loading & cpl import/export stay in forward_step.F)
o update coupling interface to work with new staggerTimeStep
o change MDSIO ptracers_pickup.


Revision 1.334 - (view) (download) (annotate) - [select for diffs]
Sat Jul 24 02:47:35 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.333: +3 -1 lines
Diff to previous 1.333
update (few bugs fixed)


Revision 1.333 - (view) (download) (annotate) - [select for diffs]
Wed Jul 21 16:34:46 2004 UTC (19 years, 7 months ago) by edhill
Branch: MAIN
Changes since 1.332: +3 -1 lines
Diff to previous 1.332
 o netcdf (mnc) now compiles and runs on halem


Revision 1.332 - (view) (download) (annotate) - [select for diffs]
Sun Jul 18 14:20:17 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint54c_post
Changes since 1.331: +2 -1 lines
Diff to previous 1.331
checkpoint54c_post


Revision 1.331 - (view) (download) (annotate) - [select for diffs]
Sun Jul 18 01:57:02 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.330: +5 -1 lines
Diff to previous 1.330
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr
  this affects (truncation error) output.txt of test-exp:
   global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box
o pkg/kpp: replace pMask by maskC to reduce memory size (one 3.D array)


Revision 1.330 - (view) (download) (annotate) - [select for diffs]
Fri Jul 16 01:38:50 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.329: +3 -1 lines
Diff to previous 1.329
o change Qnet to always be the net heat flux, (+upward).
  affects (truncation error) output of natl_box exp.: updated


Revision 1.329 - (view) (download) (annotate) - [select for diffs]
Tue Jul 13 18:26:12 2004 UTC (19 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.328: +5 -1 lines
Diff to previous 1.328
o define the max number of passive tracers in PTRACERS_SIZE.h
o start to test routinely pkg/mnc in exp0
o add sea-ice loading (sIceLoad) as a new forcing field.


Revision 1.328 - (view) (download) (annotate) - [select for diffs]
Fri Jul 9 14:40:35 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.327: +2 -1 lines
Diff to previous 1.327
add "checkpoint54b_post", created yesterday but missing in tag-index


Revision 1.327 - (view) (download) (annotate) - [select for diffs]
Thu Jul 8 20:58:24 2004 UTC (19 years, 8 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint54b_post
Changes since 1.326: +3 -1 lines
Diff to previous 1.326
 o add testreport "-j JOBS" for parallel builds -- gives impressive
   speedup on Altix, Opteron, and other SMP machines


Revision 1.326 - (view) (download) (annotate) - [select for diffs]
Thu Jul 8 16:27:31 2004 UTC (19 years, 8 months ago) by edhill
Branch: MAIN
Changes since 1.325: +2 -1 lines
Diff to previous 1.325
 o add diagnostics/mnc


Revision 1.325 - (view) (download) (annotate) - [select for diffs]
Thu Jul 8 16:15:20 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.324: +2 -1 lines
Diff to previous 1.324
o staggerTimeStep & NLFS: update pkg aim_v23 & thsice; update aim.5l_cs output


Revision 1.324 - (view) (download) (annotate) - [select for diffs]
Wed Jul 7 22:47:13 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.323: +2 -1 lines
Diff to previous 1.323
o staggerTimeStep & multi-Dim-Advec: Exch(U,V) added


Revision 1.323 - (view) (download) (annotate) - [select for diffs]
Wed Jul 7 02:12:08 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.322: +5 -1 lines
Diff to previous 1.322
o staggerTimeStep & NLFS: rescale T & S surface tendencies.
  affects (truncation error) output of lab_sea & natl_box exp.: updated
o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.)


Revision 1.322 - (view) (download) (annotate) - [select for diffs]
Tue Jul 6 02:44:27 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint54a_post
Changes since 1.321: +7 -2 lines
Diff to previous 1.321
checkpoint54a_post
o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order).
o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.)
o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished)
o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D)
  + internal_wave (shift in writing cg2d_ini_res)


Revision 1.321 - (view) (download) (annotate) - [select for diffs]
Mon Jul 5 23:56:43 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint54a_pre
Changes since 1.320: +4 -1 lines
Diff to previous 1.320
o tag before changing staggerTimeStep : checkpoint54a_pre


Revision 1.320 - (view) (download) (annotate) - [select for diffs]
Mon Jul 5 20:05:07 2004 UTC (19 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.319: +4 -1 lines
Diff to previous 1.319
o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice
  - modified verification/lab_sea and natl_box_adjoint accordingly


Revision 1.319 - (view) (download) (annotate) - [select for diffs]
Fri Jul 2 17:59:46 2004 UTC (19 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint54
Changes since 1.318: +2 -1 lines
Diff to previous 1.318
updating


Revision 1.318 - (view) (download) (annotate) - [select for diffs]
Fri Jul 2 16:00:06 2004 UTC (19 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint53g_post
Changes since 1.317: +3 -1 lines
Diff to previous 1.317
update


Revision 1.317 - (view) (download) (annotate) - [select for diffs]
Thu Jul 1 21:46:48 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.316: +2 -1 lines
Diff to previous 1.316
o prepare splitting of thermodynamics: store convect.counter in common block


Revision 1.316 - (view) (download) (annotate) - [select for diffs]
Tue Jun 29 23:24:26 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.315: +3 -1 lines
Diff to previous 1.315
o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error)
  output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave


Revision 1.315 - (view) (download) (annotate) - [select for diffs]
Mon Jun 28 21:10:55 2004 UTC (19 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.314: +2 -1 lines
Diff to previous 1.314
o cnh's modifs to gad_advection.F for cube-sphere multi-dim advection


Revision 1.314 - (view) (download) (annotate) - [select for diffs]
Sat Jun 26 02:41:46 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.313: +4 -1 lines
Diff to previous 1.313
o new parameter "nShapS": allow to treat differently S from T (nShapT)
o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S)


Revision 1.313 - (view) (download) (annotate) - [select for diffs]
Fri Jun 25 19:49:14 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint53f_post
Changes since 1.312: +6 -2 lines
Diff to previous 1.312
checkpoint53f_post
o modifications that affect AIM experiment results (update output.txt):
  - no advection of S at top interface Nr (pkg/generic_advdiff)
  - air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F)


Revision 1.312 - (view) (download) (annotate) - [select for diffs]
Fri Jun 25 00:28:53 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.311: +5 -1 lines
Diff to previous 1.311
o AIM pkg:
  - include stability function into surf.Flux derivative relative to Tsurf
  - calculate clear-sky radiation & surface temp. change (for diagnostics)


Revision 1.311 - (view) (download) (annotate) - [select for diffs]
Thu Jun 24 20:27:32 2004 UTC (19 years, 8 months ago) by afe
Branch: MAIN
Changes since 1.310: +4 -2 lines
Diff to previous 1.310
added checkpoint53e_post notes


Revision 1.310 - (view) (download) (annotate) - [select for diffs]
Thu Jun 24 20:22:02 2004 UTC (19 years, 8 months ago) by afe
Branch: MAIN
Changes since 1.309: +4 -1 lines
Diff to previous 1.309
o about to check in some rotating tank merges


Revision 1.309 - (view) (download) (annotate) - [select for diffs]
Mon Jun 14 19:05:36 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint53d_post
Changes since 1.308: +4 -2 lines
Diff to previous 1.308
checkpoint53d_post


Revision 1.308 - (view) (download) (annotate) - [select for diffs]
Sat Jun 12 21:18:11 2004 UTC (19 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.307: +3 -2 lines
Diff to previous 1.307
o faulks upgraded: re-generate output.txt that has changed:
   global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box


Revision 1.307 - (view) (download) (annotate) - [select for diffs]
Wed Jun 9 14:03:30 2004 UTC (19 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.306: +2 -1 lines
Diff to previous 1.306
Added vertical diffusivity profile (T/S) due to Bryan and Lewis, 1979.
New parameters:
 diffKrBL79surf - surface diffusivity
 diffKrBL79deep - deep diffusivity
 diffKrBL79Ho   - turning depth for arctan function
 diffKrBL79scl  - depth scale for arctan function
This diffusivity is added to all other diffusivities. The defaults are
set so as to give zero diffusivity.


Revision 1.306 - (view) (download) (annotate) - [select for diffs]
Thu Jun 3 16:49:35 2004 UTC (19 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.305: +2 -1 lines
Diff to previous 1.305
o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing.


Revision 1.305 - (view) (download) (annotate) - [select for diffs]
Wed Jun 2 13:23:55 2004 UTC (19 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.304: +4 -2 lines
Diff to previous 1.304
Added Sadourny discretization of Coriolis in V.I. mode
 - moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h
 - re-enabled use of omega3 in mom_vecinv.F


Revision 1.304 - (view) (download) (annotate) - [select for diffs]
Wed May 26 14:50:09 2004 UTC (19 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.303: +4 -1 lines
Diff to previous 1.303
Added variable viscosity for the vector invariant equations
based on Leith, 1968, Phys. Fluids (10) 1409-1416
 - the use of the variable viscosty in the no-slip boundary conditions
   has not been implemented (but should be)
 - new parameters viscC2leith and viscC4leith are non-dimensional
 - I decided to modulate the variable viscosuty with the same viscAhMax
   and viscA4max; ideally we should have another maximum based on dx^2/dt etc.


Revision 1.303 - (view) (download) (annotate) - [select for diffs]
Tue May 25 07:48:47 2004 UTC (19 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.302: +4 -1 lines
Diff to previous 1.302
o add comment


Revision 1.302 - (view) (download) (annotate) - [select for diffs]
Mon May 24 15:37:59 2004 UTC (19 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.301: +3 -1 lines
Diff to previous 1.301
Bug fix for mom_*_sidedrag.F


Revision 1.301 - (view) (download) (annotate) - [select for diffs]
Mon May 24 14:10:02 2004 UTC (19 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.300: +7 -1 lines
Diff to previous 1.300
Fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation
  of mom_common/
  - simple re-arrangement of instructions within computing loop


Revision 1.300 - (view) (download) (annotate) - [select for diffs]
Fri May 21 21:48:53 2004 UTC (19 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint53c_post, checkpoint53d_pre
Changes since 1.299: +5 -1 lines
Diff to previous 1.299
updating


Revision 1.299 - (view) (download) (annotate) - [select for diffs]
Fri May 21 21:13:34 2004 UTC (19 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.298: +5 -1 lines
Diff to previous 1.298
o new version of coupler for AIM+thSIce and Ocean models
 - new fields (SSS,h_MixLayer ...) are exchanged through the coupler
 - land: change Evaporation of snow
 - aim with thSIce: fix bug in snow-precip.


Revision 1.298 - (view) (download) (annotate) - [select for diffs]
Wed May 19 20:38:53 2004 UTC (19 years, 9 months ago) by heimbach
Branch: MAIN
Changes since 1.297: +2 -1 lines
Diff to previous 1.297
ebm package wasnt quite up to the parallel task.
Fixed that.


Revision 1.297 - (view) (download) (annotate) - [select for diffs]
Wed May 19 08:43:38 2004 UTC (19 years, 9 months ago) by mlosch
Branch: MAIN
Changes since 1.296: +9 -1 lines
Diff to previous 1.296
o updating


Revision 1.296 - (view) (download) (annotate) - [select for diffs]
Fri May 14 21:15:08 2004 UTC (19 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint53b_post
Changes since 1.295: +19 -1 lines
Diff to previous 1.295
tagging


Revision 1.295 - (view) (download) (annotate) - [select for diffs]
Fri May 14 21:04:01 2004 UTC (19 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint53b_pre
Changes since 1.294: +3 -1 lines
Diff to previous 1.294
updating


Revision 1.294 - (view) (download) (annotate) - [select for diffs]
Fri May 14 17:43:06 2004 UTC (19 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.293: +3 -1 lines
Diff to previous 1.293
Created pkg/mom_common/
 o changed pkg_groups and pkg_depend
 o moved duplicate files in mom_vecinv and mom_fluxform to mom_common/
This is in preparation for checking in Smagorinsky and Leith type variable
viscosities.


Revision 1.293 - (view) (download) (annotate) - [select for diffs]
Fri May 14 16:31:58 2004 UTC (19 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.292: +3 -1 lines
Diff to previous 1.292
o pkg/land: only liquid water can diffuse or run-off
o AIM with land: soil wetness availability account for snow


Revision 1.292 - (view) (download) (annotate) - [select for diffs]
Thu May 13 21:44:59 2004 UTC (19 years, 9 months ago) by dimitri
Branch: MAIN
Changes since 1.291: +3 -1 lines
Diff to previous 1.291
o added printMapIncludesZeros to EEPARMS namelist


Revision 1.291 - (view) (download) (annotate) - [select for diffs]
Wed May 12 18:45:44 2004 UTC (19 years, 9 months ago) by dimitri
Branch: MAIN
Changes since 1.290: +6 -1 lines
Diff to previous 1.290
added comments for mods to verification/natl_box_adjoint


Revision 1.290 - (view) (download) (annotate) - [select for diffs]
Tue May 11 20:59:19 2004 UTC (19 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint53a_post
Changes since 1.289: +9 -1 lines
Diff to previous 1.289
updating


Revision 1.289 - (view) (download) (annotate) - [select for diffs]
Thu May 6 13:51:15 2004 UTC (19 years, 10 months ago) by cnh
Branch: MAIN
CVS Tags: checkpoint53
Changes since 1.288: +11 -1 lines
Diff to previous 1.288
Added comments for checkpoint53


Revision 1.288 - (view) (download) (annotate) - [select for diffs]
Thu May 6 02:42:49 2004 UTC (19 years, 10 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint52n_post
Changes since 1.287: +5 -1 lines
Diff to previous 1.287
 o about to create checkpoint52n_post


Revision 1.287 - (view) (download) (annotate) - [select for diffs]
Wed May 5 00:23:37 2004 UTC (19 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.286: +4 -1 lines
Diff to previous 1.286
  - added SEAICE_deltaTtherm and SEAICE_deltaTdyn in order to reduce cost
    of pkg/seaice.  For time being, SEAICE_deltaTtherm = deltaTtracer
    and SEAICE_deltaTdyn must be integer multiple of SEAICE_deltaTtherm


Revision 1.286 - (view) (download) (annotate) - [select for diffs]
Mon May 3 07:12:25 2004 UTC (19 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.285: +2 -2 lines
Diff to previous 1.285
  - changed proxy for geostrophic velocity and updated
    verification/lab_sea/results/* accordingly


Revision 1.285 - (view) (download) (annotate) - [select for diffs]
Mon May 3 06:58:39 2004 UTC (19 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.284: +7 -4 lines
Diff to previous 1.284
  - changed proxy for geostrophic velocity and updated
    verification/lab_sea/results/output.txt accordingly


Revision 1.284 - (view) (download) (annotate) - [select for diffs]
Mon May 3 06:09:39 2004 UTC (19 years, 10 months ago) by dimitri
Branch: MAIN
Changes since 1.283: +2 -1 lines
Diff to previous 1.283
o removed ADI dynamic solver from pkg/seaice


Revision 1.283 - (view) (download) (annotate) - [select for diffs]
Wed Apr 28 12:01:30 2004 UTC (19 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.282: +4 -1 lines
Diff to previous 1.282
o replaced all occurrences of 1/CSTICE or 1/CSUICE
  - they caused a segmentation fault under certain circumstances
  - removed unused field WATR


Revision 1.282 - (view) (download) (annotate) - [select for diffs]
Tue Apr 20 19:16:48 2004 UTC (19 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.281: +4 -1 lines
Diff to previous 1.281
o bug fix in exf-package:
  -  u/vwind are defined at tracer/pressure points. The values of u/vwindmask
     now reflect that.
  - fortuitously this change does not affect any of the verifaction
    experiments


Revision 1.281 - (view) (download) (annotate) - [select for diffs]
Mon Apr 19 23:25:15 2004 UTC (19 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.280: +5 -1 lines
Diff to previous 1.280
o small fixes in the cal-package:
  - set reference date to first of January for the 'model'-calendar
  - failing of cal_CheckDate in cal_FullDate now actually results in a
    warning


Revision 1.280 - (view) (download) (annotate) - [select for diffs]
Mon Apr 19 22:30:46 2004 UTC (19 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.279: +6 -1 lines
Diff to previous 1.279
o small modifications in exf-package to increase flexibility:
  - change climtempfreeze from a constant to a runtime parameter that
    is specified in data.exf_clim (default = -1.9)
  - introduce runtime parameter windstressmax (default = 2.0) that is
    specified in data.exf


Revision 1.279 - (view) (download) (annotate) - [select for diffs]
Sun Apr 18 22:31:33 2004 UTC (19 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.278: +6 -1 lines
Diff to previous 1.278
fix in pkg/thsice ; update (global_ocean.cs32x15/) output.txt.thsice


Revision 1.278 - (view) (download) (annotate) - [select for diffs]
Sun Apr 18 21:43:24 2004 UTC (19 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52m_post
Changes since 1.277: +2 -1 lines
Diff to previous 1.277
make checkpoint52m_post


Revision 1.277 - (view) (download) (annotate) - [select for diffs]
Sun Apr 18 20:36:56 2004 UTC (19 years, 10 months ago) by mlosch
Branch: MAIN
Changes since 1.276: +5 -1 lines
Diff to previous 1.276
o commented out call to cal_GetMonthsRec in swfrac.F and added some comments;
  this does not change any of the results, because myIter=0 in swfrac always
  lead to jwtype=2 (the default anyway), but the call makes little sense
  as a default


Revision 1.276 - (view) (download) (annotate) - [select for diffs]
Thu Apr 8 05:09:20 2004 UTC (19 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.275: +2 -1 lines
Diff to previous 1.275
o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated


Revision 1.275 - (view) (download) (annotate) - [select for diffs]
Thu Apr 8 00:25:10 2004 UTC (19 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.274: +5 -1 lines
Diff to previous 1.274
o re-work pkg/thsice interface with ocean & bulk_force pkg to allow
  atmospheric model (AIM) to use it ; add a "slab ocean" component.
o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice)
o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice


Revision 1.274 - (view) (download) (annotate) - [select for diffs]
Tue Apr 6 00:25:56 2004 UTC (19 years, 11 months ago) by dimitri
Branch: MAIN
Changes since 1.273: +4 -1 lines
Diff to previous 1.273
o extending useSingleCpuIO option to work with new exch2 I/O format
  - old-style, missing-tile I/O is still accessible by defining CPP
    option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h


Revision 1.273 - (view) (download) (annotate) - [select for diffs]
Mon Apr 5 06:05:07 2004 UTC (19 years, 11 months ago) by edhill
Branch: MAIN
Changes since 1.272: +3 -1 lines
Diff to previous 1.272
 o add notes


Revision 1.272 - (view) (download) (annotate) - [select for diffs]
Mon Mar 29 22:10:28 2004 UTC (19 years, 11 months ago) by edhill
Branch: MAIN
Changes since 1.271: +6 -1 lines
Diff to previous 1.271
 o added api_reference comments


Revision 1.271 - (view) (download) (annotate) - [select for diffs]
Tue Mar 23 19:47:05 2004 UTC (19 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.270: +3 -1 lines
Diff to previous 1.270
updating


Revision 1.270 - (view) (download) (annotate) - [select for diffs]
Mon Mar 22 05:10:10 2004 UTC (19 years, 11 months ago) by edhill
Branch: MAIN
Changes since 1.269: +6 -2 lines
Diff to previous 1.269
 o C code to create a directory (eg. "mnc_20040322_0001") with a name
   based on the creation date and a sequence number


Revision 1.269 - (view) (download) (annotate) - [select for diffs]
Fri Mar 19 05:15:56 2004 UTC (19 years, 11 months ago) by edhill
Branch: MAIN
Changes since 1.268: +5 -1 lines
Diff to previous 1.268
 o add mnc comments


Revision 1.268 - (view) (download) (annotate) - [select for diffs]
Fri Mar 12 20:57:21 2004 UTC (19 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.267: +3 -1 lines
Diff to previous 1.267
o thermodynamics sea-ice (thsice) is now tested with testreport.
o test exp. advect_cs: use the standard cs32 grid ; update output.


Revision 1.267 - (view) (download) (annotate) - [select for diffs]
Thu Mar 11 14:54:53 2004 UTC (19 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52l_post
Changes since 1.266: +12 -1 lines
Diff to previous 1.266
checkpoint52l_post
o new land formulation:
  a) use ground enthalpy as prognostic variable to ensure exact
     energy conservation.
  b) account for water temperature and for latent heat of freezing
     in all processes (rain, run-off, ground storage)
  c) compute surface and ground temperature implicitly.
o aim_v23 modification for new land model:
  a) Treat separately land / ocean / sea-ice surface fluxes
     to allow implicit computation of land & sea-ice surface temp.
  b) add snow precipitation.


Revision 1.266 - (view) (download) (annotate) - [select for diffs]
Thu Mar 11 14:10:00 2004 UTC (19 years, 11 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52l_pre
Changes since 1.265: +4 -1 lines
Diff to previous 1.265
checkpoint52l_pre before checking in new land model.


Revision 1.265 - (view) (download) (annotate) - [select for diffs]
Fri Mar 5 02:50:25 2004 UTC (20 years ago) by jmc
Branch: MAIN
CVS Tags: hrcube5
Changes since 1.264: +3 -2 lines
Diff to previous 1.264
o fix problem (when 1 tile is empty) in min/max monitor.
o fix bug in timeAve (u,vZetatave in common block)


Revision 1.264 - (view) (download) (annotate) - [select for diffs]
Wed Mar 3 05:17:44 2004 UTC (20 years ago) by dimitri
Branch: MAIN
Changes since 1.263: +2 -1 lines
Diff to previous 1.263
o no restoring terms under ice for pkg/seaice
o modfied EXF_EXTERNAL_FLUXES option
o added exf_albedo parameter


Revision 1.263 - (view) (download) (annotate) - [select for diffs]
Tue Mar 2 08:45:46 2004 UTC (20 years ago) by dimitri
Branch: MAIN
Changes since 1.262: +3 -1 lines
Diff to previous 1.262
o moved SEAICE_DO_DIAGS to S/R do_the_model_io
o bug fix for pkg/seaice pickups


Revision 1.262 - (view) (download) (annotate) - [select for diffs]
Thu Feb 26 22:39:55 2004 UTC (20 years ago) by edhill
Branch: MAIN
Changes since 1.261: +2 -1 lines
Diff to previous 1.261
 o MNC changes


Revision 1.261 - (view) (download) (annotate) - [select for diffs]
Thu Feb 26 19:36:38 2004 UTC (20 years ago) by heimbach
Branch: MAIN
Changes since 1.260: +2 -1 lines
Diff to previous 1.260
updating


Revision 1.260 - (view) (download) (annotate) - [select for diffs]
Thu Feb 26 00:05:44 2004 UTC (20 years ago) by jmc
Branch: MAIN
Changes since 1.259: +4 -1 lines
Diff to previous 1.259
o mask vorticity at the corner ; affects global_ocean.cs output
o fix ini_curvilinear_grid ; test CS experiments with mpi


Revision 1.259 - (view) (download) (annotate) - [select for diffs]
Mon Feb 23 21:00:05 2004 UTC (20 years ago) by jmc
Branch: MAIN
Changes since 1.258: +2 -1 lines
Diff to previous 1.258
 aim.5l_cs: modify sea-ice fraction input file ; update output


Revision 1.258 - (view) (download) (annotate) - [select for diffs]
Mon Feb 23 19:20:16 2004 UTC (20 years ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint52k_post
Changes since 1.257: +2 -1 lines
Diff to previous 1.257
updating


Revision 1.257 - (view) (download) (annotate) - [select for diffs]
Mon Feb 23 19:19:15 2004 UTC (20 years ago) by heimbach
Branch: MAIN
Changes since 1.256: +9 -1 lines
Diff to previous 1.256
c52k_post


Revision 1.256 - (view) (download) (annotate) - [select for diffs]
Mon Feb 23 18:57:48 2004 UTC (20 years ago) by adcroft
Branch: MAIN
Changes since 1.255: +5 -1 lines
Diff to previous 1.255
Logging monitor bug fix and tidy up of diags


Revision 1.255 - (view) (download) (annotate) - [select for diffs]
Wed Feb 18 22:34:52 2004 UTC (20 years ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint52j_post
Changes since 1.254: +11 -1 lines
Diff to previous 1.254
updating


Revision 1.254 - (view) (download) (annotate) - [select for diffs]
Tue Feb 3 22:51:50 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
CVS Tags: checkpoint52j_pre, hrcube4, hrcube_3
Changes since 1.253: +3 -1 lines
Diff to previous 1.253
gave pkg/mdsio/mdsio_readfield.F more useful logic and error messages


Revision 1.253 - (view) (download) (annotate) - [select for diffs]
Tue Jan 27 19:55:02 2004 UTC (20 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.252: +4 -3 lines
Diff to previous 1.252
o fix errorMessageUnit problem. remove old version of mdsio from eesup/src


Revision 1.252 - (view) (download) (annotate) - [select for diffs]
Mon Jan 26 21:08:07 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.251: +3 -2 lines
Diff to previous 1.251
o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating
  debug output


Revision 1.251 - (view) (download) (annotate) - [select for diffs]
Mon Jan 26 19:44:46 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.250: +2 -1 lines
Diff to previous 1.250
o modified mdsio_writefield to handle non-global files under exch2


Revision 1.250 - (view) (download) (annotate) - [select for diffs]
Mon Jan 26 18:06:42 2004 UTC (20 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.249: +5 -1 lines
Diff to previous 1.249
o update AIM Cubed-Sphere exp (aim.5l_cs):
  use land, p*, and Franco.M forcing fields with fractional land-sea mask.
o update AIM Equatorial Channel exp:
  use standard aim_v23 pkg and change the SST fields to be more realistic.


Revision 1.249 - (view) (download) (annotate) - [select for diffs]
Sun Jan 25 00:31:52 2004 UTC (20 years, 1 month ago) by dimitri
Branch: MAIN
CVS Tags: hrcube_2
Changes since 1.248: +2 -1 lines
Diff to previous 1.248
o limit timeave output for hi-res integrations


Revision 1.248 - (view) (download) (annotate) - [select for diffs]
Fri Jan 23 21:26:55 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.247: +2 -1 lines
Diff to previous 1.247
o modified mdsdio_readfield and mdsio_writefield to make exch2 do globalFile --
  but *not* usesingleCPUIO


Revision 1.247 - (view) (download) (annotate) - [select for diffs]
Thu Jan 22 17:17:19 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.246: +5 -1 lines
Diff to previous 1.246
o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and
  mon_vort3.F to make exch2 friendly with >1 tile per cube
  face


Revision 1.246 - (view) (download) (annotate) - [select for diffs]
Wed Jan 21 21:37:32 2004 UTC (20 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52i_post
Changes since 1.245: +4 -1 lines
Diff to previous 1.245
o update aim.5l_LatLon using the standard aim_v23 pkg (instead of
  the old pkg/aim).


Revision 1.245 - (view) (download) (annotate) - [select for diffs]
Wed Jan 21 21:33:35 2004 UTC (20 years, 1 month ago) by adcroft
Branch: MAIN
Changes since 1.244: +6 -1 lines
Diff to previous 1.244
New tag checkpoint52i_pre/post


Revision 1.244 - (view) (download) (annotate) - [select for diffs]
Tue Jan 20 17:02:40 2004 UTC (20 years, 1 month ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint52h_pre, checkpoint52i_pre
Changes since 1.243: +2 -1 lines
Diff to previous 1.243
Modified doc/tag-index and verification/lab_sea/README


Revision 1.243 - (view) (download) (annotate) - [select for diffs]
Mon Jan 19 18:59:19 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.242: +2 -1 lines
Diff to previous 1.242
shortened offending lines in exch2_send_rx?.template


Revision 1.242 - (view) (download) (annotate) - [select for diffs]
Fri Jan 16 20:26:05 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.241: +2 -1 lines
Diff to previous 1.241
Modified W2_EXCH2_TOPOLOGY.h to reflect current topo generator


Revision 1.241 - (view) (download) (annotate) - [select for diffs]
Thu Jan 15 03:38:22 2004 UTC (20 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.240: +4 -1 lines
Diff to previous 1.240
o added temporary hack for sea-ice dynamics on the cube:
  metric terms are ignored and it is assumed that
  there is no sea-ice on cube faces 1, 2, 4, and 5.


Revision 1.240 - (view) (download) (annotate) - [select for diffs]
Wed Jan 14 03:49:57 2004 UTC (20 years, 1 month ago) by edhill
Branch: MAIN
Changes since 1.239: +2 -2 lines
Diff to previous 1.239
 o genmake2: add build & execute test for NetCDF code


Revision 1.239 - (view) (download) (annotate) - [select for diffs]
Mon Jan 12 20:41:59 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.238: +4 -1 lines
Diff to previous 1.238
aim.5l_cs and global_ocean.cs32x15 now using exch2, grid file cleanup


Revision 1.238 - (view) (download) (annotate) - [select for diffs]
Sat Jan 10 00:48:49 2004 UTC (20 years, 1 month ago) by dimitri
Branch: MAIN
CVS Tags: hrcube_1
Changes since 1.237: +5 -3 lines
Diff to previous 1.237
o added useSingleCPUIO flag to monitor.F and mon_out.F


Revision 1.237 - (view) (download) (annotate) - [select for diffs]
Fri Jan 9 21:29:24 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
Changes since 1.236: +3 -3 lines
Diff to previous 1.236
remodified tag entry


Revision 1.236 - (view) (download) (annotate) - [select for diffs]
Fri Jan 9 20:46:09 2004 UTC (20 years, 1 month ago) by afe
Branch: MAIN
CVS Tags: checkpoint52f_post
Changes since 1.235: +7 -1 lines
Diff to previous 1.235
Added exch2 routines and pointed hs94.cs-32x32x5 at them


Revision 1.235 - (view) (download) (annotate) - [select for diffs]
Wed Jan 7 22:26:05 2004 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52e_post, checkpoint52f_pre
Changes since 1.234: +7 -1 lines
Diff to previous 1.234
checkpoint52e_post
o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F)
  to work with implicit vertical advection and AB ;
o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme.
o update output (gad_calc_rhs.F changes affect truncation error) of exp:
 front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box


Revision 1.234 - (view) (download) (annotate) - [select for diffs]
Sat Jan 3 01:03:10 2004 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.233: +3 -1 lines
Diff to previous 1.233
o first attempt to solve vertical advection (momemtum & T,S) implicitly:
  for now, only implemented with Lax-Wendroff (tracer) and VecInv (mom)


Revision 1.233 - (view) (download) (annotate) - [select for diffs]
Fri Jan 2 23:59:36 2004 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52e_pre
Changes since 1.232: +4 -1 lines
Diff to previous 1.232
tag checkpoint52e_pre before adding implicit vertical advection


Revision 1.232 - (view) (download) (annotate) - [select for diffs]
Wed Dec 31 20:29:54 2003 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.231: +3 -1 lines
Diff to previous 1.231
o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt
o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test.


Revision 1.231 - (view) (download) (annotate) - [select for diffs]
Thu Dec 18 06:20:53 2003 UTC (20 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.230: +3 -1 lines
Diff to previous 1.230
fix for long (>60 years) integrations


Revision 1.230 - (view) (download) (annotate) - [select for diffs]
Wed Dec 17 14:22:38 2003 UTC (20 years, 2 months ago) by adcroft
Branch: MAIN
Changes since 1.229: +5 -1 lines
Diff to previous 1.229
Missed entry for last tag


Revision 1.229 - (view) (download) (annotate) - [select for diffs]
Wed Dec 17 05:39:01 2003 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.228: +3 -1 lines
Diff to previous 1.228
o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2
  ocean exp. that uses NLFS: global_ocean.cs32x15 & global_ocean_pressure


Revision 1.228 - (view) (download) (annotate) - [select for diffs]
Tue Dec 16 23:28:39 2003 UTC (20 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.227: +3 -1 lines
Diff to previous 1.227
added exf_offset_atemp for Celsius to Kelvin conversion of atemp


Revision 1.227 - (view) (download) (annotate) - [select for diffs]
Tue Dec 16 20:02:54 2003 UTC (20 years, 2 months ago) by molod
Branch: MAIN
Changes since 1.226: +2 -1 lines
Diff to previous 1.226
o Updated tag index file for fizhi infrastructure changes


Revision 1.226 - (view) (download) (annotate) - [select for diffs]
Tue Dec 16 15:16:39 2003 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52d_post
Changes since 1.225: +2 -1 lines
Diff to previous 1.225
tag checkpoint52d_post


Revision 1.225 - (view) (download) (annotate) - [select for diffs]
Mon Dec 15 23:40:21 2003 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.224: +3 -1 lines
Diff to previous 1.224
o new experiment, cpl_aim+ocn: coupled ocean - AIM atmosphere on cs32 grid.


Revision 1.224 - (view) (download) (annotate) - [select for diffs]
Mon Dec 15 02:21:14 2003 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.223: +7 -1 lines
Diff to previous 1.223
first version of the coupler + interfaces for multi-components set-up.


Revision 1.223 - (view) (download) (annotate) - [select for diffs]
Sun Dec 14 23:30:13 2003 UTC (20 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.222: +4 -1 lines
Diff to previous 1.222
o packages pickup: $PKG_write_pickup called from packages_write_pickup ;
   but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code
   to conform to the common rule.


Revision 1.222 - (view) (download) (annotate) - [select for diffs]
Wed Dec 10 19:37:25 2003 UTC (20 years, 2 months ago) by dimitri
Branch: MAIN
Branch point for: netcdf-sm0
Changes since 1.221: +11 -2 lines
Diff to previous 1.221
o changes to permit hi-res, cubed-sphere, configuration
  - added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F
  - added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F
  - added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation
    of surface winds for the cube
  (A verification experiment, based on global_ocean.cs32x15, but with
   pkg/seaice turned on and with on-the-fly interpolation from the NCEP
   Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice,
   complete with example surface forcing files and matlab scripts to look
   at the output and compare it with that of global_ocean.cs32x15.)


Revision 1.221 - (view) (download) (annotate) - [select for diffs]
Mon Dec 8 02:13:59 2003 UTC (20 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.220: +2 -1 lines
Diff to previous 1.220
added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F


Revision 1.220 - (view) (download) (annotate) - [select for diffs]
Sun Dec 7 20:37:32 2003 UTC (20 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.219: +3 -1 lines
Diff to previous 1.219
o change global_ocean.cs32x15 because of Pb with GM on CS-grid.


Revision 1.219 - (view) (download) (annotate) - [select for diffs]
Sat Dec 6 21:41:18 2003 UTC (20 years, 3 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint52d_pre
Changes since 1.218: +2 -1 lines
Diff to previous 1.218
added tag checkpoint52d_pre


Revision 1.218 - (view) (download) (annotate) - [select for diffs]
Sat Dec 6 00:35:13 2003 UTC (20 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.217: +2 -1 lines
Diff to previous 1.217
add call to AIM pendant S/R in external_forcing & external_fields_load.F


Revision 1.217 - (view) (download) (annotate) - [select for diffs]
Fri Dec 5 02:46:41 2003 UTC (20 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.216: +3 -1 lines
Diff to previous 1.216
o surface flux time-av diagnostic modified for NLFS & RealFreshWater


Revision 1.216 - (view) (download) (annotate) - [select for diffs]
Thu Dec 4 19:43:03 2003 UTC (20 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.215: +2 -2 lines
Diff to previous 1.215
Reverse mode: 53 -> 52


Revision 1.215 - (view) (download) (annotate) - [select for diffs]
Tue Nov 25 23:33:21 2003 UTC (20 years, 3 months ago) by heimbach
Branch: MAIN
CVS Tags: branch-netcdf, checkpoint52c_post
Changes since 1.214: +4 -1 lines
Diff to previous 1.214
tagging checkpoint52c_post


Revision 1.214 - (view) (download) (annotate) - [select for diffs]
Tue Nov 25 19:06:08 2003 UTC (20 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.213: +3 -1 lines
Diff to previous 1.213
updating


Revision 1.213 - (view) (download) (annotate) - [select for diffs]
Tue Nov 25 16:28:48 2003 UTC (20 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.212: +10 -1 lines
Diff to previous 1.212
updating


Revision 1.212 - (view) (download) (annotate) - [select for diffs]
Sun Nov 23 04:28:12 2003 UTC (20 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52b_post
Changes since 1.211: +9 -1 lines
Diff to previous 1.211
 checkpoint52b_post
 o new version: "thsice" of thermodynamic sea-ice pkg:
  - only 1 call from "forward_step"; conserve energy, fresh-water & salt.
  - modify fluxes but do not change theta directly;
  - light cleaning of bulk_force pkg (still needed with thsice).
  - add forcing fields + data files in global_ocean.cs32x15/inp_thsice
    + output_thsice.txt to test thsice & bulk_force pkgs.
 o put back grid & coriolis monitor output.


Revision 1.211 - (view) (download) (annotate) - [select for diffs]
Sun Nov 23 00:44:11 2003 UTC (20 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint52b_pre
Changes since 1.210: +5 -1 lines
Diff to previous 1.210
tag checkpoint52b_pre before checking-in new ThermSeaIce (ThSIce) pkg


Revision 1.210 - (view) (download) (annotate) - [select for diffs]
Thu Nov 20 02:30:16 2003 UTC (20 years, 3 months ago) by heimbach
Branch: MAIN
Changes since 1.209: +7 -1 lines
Diff to previous 1.209
updating


Revision 1.209 - (view) (download) (annotate) - [select for diffs]
Mon Nov 17 23:45:57 2003 UTC (20 years, 3 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint52a_post
Changes since 1.208: +6 -1 lines
Diff to previous 1.208
updating


Revision 1.208 - (view) (download) (annotate) - [select for diffs]
Thu Nov 13 22:51:32 2003 UTC (20 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.207: +7 -8 lines
Diff to previous 1.207
 FREEZE_SURFACE is the new version of FREEZE and limits only surface
  temperature; keep the old version of FREEZE to reproduce old results.


Revision 1.207 - (view) (download) (annotate) - [select for diffs]
Thu Nov 13 06:35:13 2003 UTC (20 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.206: +12 -2 lines
Diff to previous 1.206
o modifications to make FREEZE flux visible to pkg/kpp
  - moved surfaceTendencyTice from pkg/seaice to main code
  - FREEZE moved to FORWARD_STEP
  - subroutine FREEZE now limits only surface temperature
    this means new output.txt for global_ocean.90x40x15,
    global_ocean.cs32x15, and global_with_exf, but note
    that results for these three experiments remain
    bit-identical to before if allowFreezing=.FALSE.
o added surface flux output variables to TIMEAVE_STATVARS
o time-averaged output for pkg/ptracers


Revision 1.206 - (view) (download) (annotate) - [select for diffs]
Wed Nov 12 00:02:44 2003 UTC (20 years, 3 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint52a_pre
Changes since 1.205: +5 -1 lines
Diff to previous 1.205
o some bug fixes for #undef REAL4_IS_SLOW


Revision 1.205 - (view) (download) (annotate) - [select for diffs]
Fri Nov 7 05:24:46 2003 UTC (20 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint52, ecco_c52_e35
Changes since 1.204: +4 -1 lines
Diff to previous 1.204
tagging checkpoint52 = ecco_c52_e35


Revision 1.204 - (view) (download) (annotate) - [select for diffs]
Thu Nov 6 22:52:11 2003 UTC (20 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51u_post
Changes since 1.203: +25 -1 lines
Diff to previous 1.203
updating


Revision 1.203 - (view) (download) (annotate) - [select for diffs]
Tue Nov 4 21:42:15 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51s_post, checkpoint51t_post
Changes since 1.202: +4 -1 lines
Diff to previous 1.202
 o creating checkpoint51s_post


Revision 1.202 - (view) (download) (annotate) - [select for diffs]
Mon Nov 3 03:51:35 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51r_post
Branch point for: branch-nonh
Changes since 1.201: +6 -1 lines
Diff to previous 1.201
 o created checkpoint51r_post


Revision 1.201 - (view) (download) (annotate) - [select for diffs]
Thu Oct 30 19:21:04 2003 UTC (20 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51q_post
Changes since 1.200: +17 -1 lines
Diff to previous 1.200
tagging checkpoint51q_post


Revision 1.200 - (view) (download) (annotate) - [select for diffs]
Thu Oct 30 12:24:44 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51p_post
Changes since 1.199: +2 -1 lines
Diff to previous 1.199
 o creating new tag


Revision 1.199 - (view) (download) (annotate) - [select for diffs]
Thu Oct 30 12:00:41 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.198: +11 -1 lines
Diff to previous 1.198
 o updated and tested version of the cd_code package
 o almost all of the cd_code functionality has been moved into
   the package but some cleanups (read/write checkpoints) remain


Revision 1.198 - (view) (download) (annotate) - [select for diffs]
Tue Oct 28 22:57:59 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.197: +5 -1 lines
Diff to previous 1.197
 o add a "cd_code" package and update all the verification tests
   so that they use the new package instead of "INCLUDE_CD_CODE"


Revision 1.197 - (view) (download) (annotate) - [select for diffs]
Mon Oct 27 23:00:59 2003 UTC (20 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51o_post
Changes since 1.196: +5 -1 lines
Diff to previous 1.196
updating old info


Revision 1.196 - (view) (download) (annotate) - [select for diffs]
Mon Oct 27 22:56:29 2003 UTC (20 years, 4 months ago) by heimbach
Branch: MAIN
Changes since 1.195: +24 -1 lines
Diff to previous 1.195
tagging checkpoint51o_post


Revision 1.195 - (view) (download) (annotate) - [select for diffs]
Fri Oct 24 05:29:35 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51o_pre
Changes since 1.194: +2 -2 lines
Diff to previous 1.194
 o undid all of the cp51 checkin pending some ongoing code cleanups
   and discussion


Revision 1.194 - (view) (download) (annotate) - [select for diffs]
Thu Oct 23 07:14:48 2003 UTC (20 years, 4 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint51n_post
Branch point for: checkpoint51n_branch
Changes since 1.193: +13 -2 lines
Diff to previous 1.193
o modifications to make FREEZE flux visible to pkg/kpp
  - moved surfaceTendencyTice from pkg/seaice to main code
  - FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP
  - subroutine FREEZE now limits only surface temperature
    (this means new output.txt for global_ocean.90x40x15,
     global_ocean.cs32x15, and global_with_exf)
o added surface flux output variables to TIMEAVE_STATVARS


Revision 1.193 - (view) (download) (annotate) - [select for diffs]
Thu Oct 23 04:41:40 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51n_pre
Changes since 1.192: +6 -1 lines
Diff to previous 1.192
 o added the [#include "AD_CONFIG.h"] statement to all files that need
   it for adjoint/tl #defines
 o re-worked the build logic in genmake2 to support AD_CONFIG.h
 o removed tools/genmake since it no longer works


Revision 1.192 - (view) (download) (annotate) - [select for diffs]
Wed Oct 22 16:35:47 2003 UTC (20 years, 4 months ago) by dimitri
Branch: MAIN
Changes since 1.191: +4 -1 lines
Diff to previous 1.191
o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F


Revision 1.191 - (view) (download) (annotate) - [select for diffs]
Tue Oct 21 21:14:08 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51m_post
Changes since 1.190: +3 -1 lines
Diff to previous 1.190
Output on faulks using -ieee with of=linux_ia32_g77:

Y Y Y Y 13 16 16 16  0 16 16 16 16 16 16 16 16 13 13 13 16 pass  adjustment.128x64x1
Y Y Y Y 16 16 16 16  0 16 16 16 16 16 16  0  0 16 16  0  0 pass  adjustment.cs-32x32x1
Y Y Y Y 16 16 16 16  0 16 16 16 16 16 16 22  0 16 16 22  0 pass  adjust_nlfs.cs-32x32x1
Y Y Y Y -- 13 13 16 16 13 13 13 13 16 16 16 16 16 16 16 16 N/O   advect_cs
Y Y Y Y -- 22 16 16 16 16 16 16 13 16 16 16 16 16 16 16 16 N/O   advect_xy
Y Y Y Y -- 13 16 13 16 16 16 16 16 16 16 22 16 16 16 16 16 N/O   advect_xz
Y Y Y Y 14 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass  aim.5l_cs
Y Y Y Y 14 16 16 16 16 16 16 16 16 16 13 13 16 16 16 13 16 pass  aim.5l_Equatorial_Channel
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 13 16 pass  aim.5l_LatLon
Y Y Y Y 13 16 16 16 16 16 16 16 16 16 13 13 13 13 13 22 16 pass  exp0
Y Y Y Y 14 16 16 16 16 16 16 16 22 16 16 16 16 16 13 22 16 pass  exp1
Y Y Y Y 13 13 16 13 16 16 16 16 16 13 13 16 16 13 13 13 13 pass  exp2
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass  exp4
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 22 16 16 16 22 16 pass  exp5
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass  front_relax
Y Y Y Y 13 16 16 13 13 16 16 13 13 16 16 13 16 12 13 13 16 pass  global_ocean.90x40x15
Y Y Y Y 10 16 16 13 13 16 13 16 16 13 13 13 13 13 16 13 16 FAIL  global_ocean.cs32x15
Y Y Y Y  6 11 12 13 13 12 13 16 13  9  9  9  9 10  9  9 11 FAIL  global_ocean_pressure
Y Y Y Y 14 16 16 13 16 16 16 13 13 13 13 13 16 12 13 13 16 pass  global_with_exf
Y Y Y Y 16 16 16 16 16 16 16 16 16 13 13 13 13 16 16  9 16 pass  hs94.128x64x5
Y Y Y Y 13 16 16 16 16 16 16 16 16 13 16 16 16 13 13 22 16 pass  hs94.1x64x5
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 13 13 16 16 22 13 pass  hs94.cs-32x32x5
Y Y Y Y  9 10 16 13 13 16 16 16 22 16 16 12 13 13 13 22 12 FAIL  ideal_2D_oce
Y Y Y Y  8 16 16 16 16 16 16 16 16 13 13  8 16 16 16 16 16 FAIL  internal_wave
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 13 22 13 13 13 22 16 pass  inverted_barometer
Y Y Y Y 12 16 16 13 16 16 16 13 16 16 13 12 13 13 13 12 13 FAIL  lab_sea
Y Y Y Y 11 16 16 16 16 16 13 16 13 13 13 12 13 12 13 12 13 FAIL  natl_box
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass  plume_on_slope
Y Y Y Y 13 16 16 16 16 13 16 16 16 16 16 16 16 13 16 16 16 pass  solid-body.cs-32x32x1


Revision 1.190 - (view) (download) (annotate) - [select for diffs]
Tue Oct 21 15:29:20 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.189: +5 -1 lines
Diff to previous 1.189
 o first version of genmake2 that works with TAF -- note that only the
   "ad_taf" target has been confirmed to work and the others are in
   progress


Revision 1.189 - (view) (download) (annotate) - [select for diffs]
Mon Oct 20 06:25:15 2003 UTC (20 years, 4 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint51l_post
Changes since 1.188: +10 -2 lines
Diff to previous 1.188
changes to pkg/cal and pkg/exf that allow and speed-up long integrations


Revision 1.188 - (view) (download) (annotate) - [select for diffs]
Fri Oct 17 00:44:32 2003 UTC (20 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint51l_pre
Branch point for: tg2-branch
Changes since 1.187: +6 -1 lines
Diff to previous 1.187
o add salt flux to forcing fields (used when salty sea-ice forms or melts)
o enable to apply restoring on S & T only in a latitude band.
o update output (external_forcing_surf modif. change truncation errors)
   global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box


Revision 1.187 - (view) (download) (annotate) - [select for diffs]
Thu Oct 16 17:14:34 2003 UTC (20 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint51k_post
Changes since 1.186: +12 -1 lines
Diff to previous 1.186
checkpoint51k_post
o change default to: useNHMTerms=.FALSE.
 - new output.txt for atmos. exp (NHMTerms were wrong but now turned off):
   adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5
 - new output.txt for idealized oceanic exp (NHMTerms are now turned off):
    exp1, ideal_2D_oce
 - change data file of oceanic exp (leave the results unchanged for now)
   exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box
o set gravitySign automatically according to the vertical coordinate used
  (and change sign: back to "logical" value: +1 when R increases downward)


Revision 1.186 - (view) (download) (annotate) - [select for diffs]
Thu Oct 16 16:29:58 2003 UTC (20 years, 4 months ago) by edhill
Branch: MAIN
Changes since 1.185: +4 -1 lines
Diff to previous 1.185
*** empty log message ***


Revision 1.185 - (view) (download) (annotate) - [select for diffs]
Fri Oct 10 23:04:46 2003 UTC (20 years, 4 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51j_post
Changes since 1.184: +15 -1 lines
Diff to previous 1.184
tagging checkpoint51j_post


Revision 1.184 - (view) (download) (annotate) - [select for diffs]
Thu Oct 9 04:19:17 2003 UTC (20 years, 5 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51i_post
Changes since 1.183: +9 -2 lines
Diff to previous 1.183
 o first check-in for the "branch-genmake2" merge
 o verification suite as run on shelley (gcc 3.2.2):

Wed Oct  8 23:42:29 EDT 2003
                T           S           U           V
G D M    c        m  s        m  s        m  s        m  s
E p a R  g  m  m  e  .  m  m  e  .  m  m  e  .  m  m  e  .
N n k u  2  i  a  a  d  i  a  a  d  i  a  a  d  i  a  a  d
2 d e n  d  n  x  n  .  n  x  n  .  n  x  n  .  n  x  n  .

OPTFILE=NONE

Y Y Y Y 13 16 16 16  0 16 16 16 16 16 16 16 16 13 12  0  0 pass  adjustment.128x64x1
Y Y Y Y 16 16 16 16  0 16 16 16 16 16 16  0  0 16 16  0  0 pass  adjustment.cs-32x32x1
Y Y Y Y 16 16 16 16  0 16 16 16 16 16 16 22  0 16 16 22  0 pass  adjust_nlfs.cs-32x32x1
Y Y Y Y -- 13 13 16 16 13 13 13 13 16 16 16 16 16 16 16 16 N/O   advect_cs
Y Y Y Y -- 22 16 16 16 16 16 16 13 16 16 16 16 16 16 16 16 N/O   advect_xy
Y Y Y Y -- 13 16 13 16 16 16 16 16 16 16 22 16 16 16 16 16 N/O   advect_xz
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass  aim.5l_cs
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 16 16 16 16 13 16 pass  aim.5l_Equatorial_Channel
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 13 16 16 13 13 16 pass  aim.5l_LatLon
Y Y Y Y 13 16 16 16 16 16 16 16 16 16 13 12 13 13 16 13 16 pass  exp0
Y Y Y Y 14 16 16 16 16 16 16 16 22 16 16 16 13 16 16 22 16 pass  exp1
Y Y Y Y 13 13 16 13 16 16 16 16 16 13 13 16 16 13 13 13 13 pass  exp2
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass  exp4
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 22 16 16 16 22 16 pass  exp5
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass  front_relax
Y Y Y Y 14 16 16 13 13 16 16 13 13 16 13 13 16 12 13 13 16 pass  global_ocean.90x40x15
Y Y Y Y 10 16 16 13 13 16 13 16 16 13 13 13 13 16 16 13 16 FAIL  global_ocean.cs32x15
Y Y Y Y  6 11 12 13 13 12 13 16 13  9  9  9  9 10  9  9 11 FAIL  global_ocean_pressure
Y Y Y Y 14 16 16 13 16 16 16 13 13 13 13 13 16 12 16 13 16 pass  global_with_exf
Y Y Y Y 14 16 16 16 16 16 16 16 16 11 13 22 13 16 16  9 16 pass  hs94.128x64x5
Y Y Y Y 13 16 16 16 16 16 16 16 16 11 16 16 16 13 16 22 13 pass  hs94.1x64x5
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 13 13 16 16 22 13 pass  hs94.cs-32x32x5
Y Y Y Y 10 10 16 13 13 16 16 16 22 16 13 13 13 13 13 22 13 FAIL  ideal_2D_oce
Y Y Y Y  8 16 16 16 16 16 16 16 16 13 13  8 16 16 16 16 16 FAIL  internal_wave
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 13 22 13 13 13 22 16 pass  inverted_barometer
Y Y Y Y 12 16 16 16 16 16 16 16 16 16 13 12 13 13 13 13 13 FAIL  lab_sea
Y Y Y Y 11 16 16 16 16 16 16 16 13 13 13 12 13 16 13 12 13 FAIL  natl_box
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass  plume_on_slope
Y Y Y Y 13 16 16 16 16 13 16 16 16 16 16 16 16 13 16 16 16 pass  solid-body.cs-32x32x1


Revision 1.183 - (view) (download) (annotate) - [select for diffs]
Wed Oct 8 19:35:00 2003 UTC (20 years, 5 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint51i_pre
Changes since 1.182: +7 -1 lines
Diff to previous 1.182
New tag before merging genmake2 branch


Revision 1.182 - (view) (download) (annotate) - [select for diffs]
Tue Oct 7 15:47:00 2003 UTC (20 years, 5 months ago) by heimbach
Branch: MAIN
Changes since 1.181: +9 -1 lines
Diff to previous 1.181
forgot to commit tag-index for c51g_post


Revision 1.181 - (view) (download) (annotate) - [select for diffs]
Mon Oct 6 20:54:01 2003 UTC (20 years, 5 months ago) by stephd
Branch: MAIN
CVS Tags: checkpoint51h_pre
Changes since 1.180: +6 -1 lines
Diff to previous 1.180
tag c51h_pre


Revision 1.180 - (view) (download) (annotate) - [select for diffs]
Thu Oct 2 21:23:59 2003 UTC (20 years, 5 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51f_post, checkpoint51g_post
Changes since 1.179: +2 -2 lines
Diff to previous 1.179
updating


Revision 1.179 - (view) (download) (annotate) - [select for diffs]
Thu Oct 2 17:43:57 2003 UTC (20 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.178: +2 -1 lines
Diff to previous 1.178
o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif)


Revision 1.178 - (view) (download) (annotate) - [select for diffs]
Wed Sep 24 06:50:26 2003 UTC (20 years, 5 months ago) by dimitri
Branch: MAIN
CVS Tags: branchpoint-genmake2
Branch point for: branch-genmake2
Changes since 1.177: +2 -2 lines
Diff to previous 1.177
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation
  of tracer Green's fucntions for ocean inversion project.


Revision 1.177 - (view) (download) (annotate) - [select for diffs]
Tue Sep 23 04:34:23 2003 UTC (20 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.176: +5 -1 lines
Diff to previous 1.176
o Mods and bug fixes to pkg/cal and pkg/exf needed for computation
  of tracer Green's fucntions for ocean inversion project.


Revision 1.176 - (view) (download) (annotate) - [select for diffs]
Thu Aug 7 02:31:28 2003 UTC (20 years, 7 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint51f_pre
Changes since 1.175: +6 -4 lines
Diff to previous 1.175
o Added on-the-fly spatial interpolation capability
    "USE_EXF_INTERPOLATION" to pkg/exf.
  - This is a temporary Cartesian-grid hack until
    the super-duper ESMF coupler becomes available.
  - See verification/global_with_exf/README for usage example.
  - Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid
    flags and modified pkg/seaice accordingly.
o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F,
    and pkg/kpp/kpp_transport_ptr.F for dealing with tracer
    non-local transport term.


Revision 1.175 - (view) (download) (annotate) - [select for diffs]
Mon Aug 4 22:53:41 2003 UTC (20 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.174: +11 -1 lines
Diff to previous 1.174
checkpoint51f_post
o Added on-the-fly spatial interpolation capability
    "USE_EXF_INTERPOLATION" to pkg/exf.
    This is a temporary Cartesian-grid hack until
    the super-duper ESMF coupler becomes available.
    Usage example is in verification/global_with_exf.
o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F,
    and pkg/kpp/kpp_transport_ptr.F for dealing with tracer
    non-local transport term.


Revision 1.174 - (view) (download) (annotate) - [select for diffs]
Sun Aug 3 15:00:55 2003 UTC (20 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint51e_post
Changes since 1.173: +8 -1 lines
Diff to previous 1.173
checkpoint51e_post
o pkg/mom_vecinv:
  - changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec)
  - add time-ave diagnostic of vorticity advection.
o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV.
o atmospheric geopotential: - include water vapor effect;
                            - use p^kappa in p* scaling.


Revision 1.173 - (view) (download) (annotate) - [select for diffs]
Thu Jul 31 18:46:24 2003 UTC (20 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.172: +6 -1 lines
Diff to previous 1.172
AIM: add stratospheric drag ; LAND : read initial state from files.


Revision 1.172 - (view) (download) (annotate) - [select for diffs]
Fri Jul 18 21:16:49 2003 UTC (20 years, 7 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51d_post
Changes since 1.171: +11 -1 lines
Diff to previous 1.171
tagging checkpoint51d_post


Revision 1.171 - (view) (download) (annotate) - [select for diffs]
Sun Jul 13 20:32:42 2003 UTC (20 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.170: +2 -1 lines
Diff to previous 1.170
fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid)


Revision 1.170 - (view) (download) (annotate) - [select for diffs]
Tue Jul 8 15:00:26 2003 UTC (20 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51c_post
Changes since 1.169: +10 -1 lines
Diff to previous 1.169
o introducing integer flag debugLevel
o introducing pathname variable mdsioLocalDir for mdsio


Revision 1.169 - (view) (download) (annotate) - [select for diffs]
Fri Jun 27 02:15:54 2003 UTC (20 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51b_post
Changes since 1.168: +15 -1 lines
Diff to previous 1.168
tagging checkpoint51b_post


Revision 1.168 - (view) (download) (annotate) - [select for diffs]
Wed Jun 25 21:17:05 2003 UTC (20 years, 8 months ago) by stephd
Branch: MAIN
CVS Tags: checkpoint51a_post, checkpoint51b_pre
Changes since 1.167: +8 -1 lines
Diff to previous 1.167
creating checkpoint51a_post


Revision 1.167 - (view) (download) (annotate) - [select for diffs]
Tue Jun 24 18:27:09 2003 UTC (20 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint51
Changes since 1.166: +3 -1 lines
Diff to previous 1.166
tagging checkpoint51


Revision 1.166 - (view) (download) (annotate) - [select for diffs]
Tue Jun 24 16:14:59 2003 UTC (20 years, 8 months ago) by heimbach
Branch: MAIN
Changes since 1.165: +7 -1 lines
Diff to previous 1.165
preparing c51


Revision 1.165 - (view) (download) (annotate) - [select for diffs]
Mon Jun 23 22:37:30 2003 UTC (20 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint50i_post
Changes since 1.164: +8 -1 lines
Diff to previous 1.164
updating


Revision 1.164 - (view) (download) (annotate) - [select for diffs]
Fri Jun 20 15:11:40 2003 UTC (20 years, 8 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint50h_post
Changes since 1.163: +4 -1 lines
Diff to previous 1.163
tagging checkpoint50h_post


Revision 1.163 - (view) (download) (annotate) - [select for diffs]
Thu Jun 12 21:25:24 2003 UTC (20 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.162: +3 -1 lines
Diff to previous 1.162
 o new package "land": provides surface BC for AIM.
 o pkg/ptracers: apply exchange to all tracers after reading a pickup.


Revision 1.162 - (view) (download) (annotate) - [select for diffs]
Thu Jun 5 16:16:00 2003 UTC (20 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.161: +2 -1 lines
Diff to previous 1.161
New variable in PARM03: pickupSuff is a string that can be set to
indicate the suffix on pickup files. This allows us to avoid renaming
the temporary pickup files.


Revision 1.161 - (view) (download) (annotate) - [select for diffs]
Mon May 26 19:03:40 2003 UTC (20 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.160: +4 -1 lines
Diff to previous 1.160
 o AIM: use true log-P extrapolation for near surface temp (= as in
    F.Molteni paper) ; update aim.5l_cs output.


Revision 1.160 - (view) (download) (annotate) - [select for diffs]
Fri May 23 20:19:15 2003 UTC (20 years, 9 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint50g_post
Changes since 1.159: +7 -1 lines
Diff to previous 1.159
checkpoint50g_post
o merged with release1_p17 (pkg/seaice and verification/lab_sea)
  - added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics
  - LSR sea-ice dynamic solver moved to SouthWest B-grid location and
    made the default because of faster convergence than ADI


Revision 1.159 - (view) (download) (annotate) - [select for diffs]
Fri May 23 18:44:58 2003 UTC (20 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint50f_post
Changes since 1.158: +9 -1 lines
Diff to previous 1.158
tagging checkpoint50f_post


Revision 1.158 - (view) (download) (annotate) - [select for diffs]
Fri May 23 18:24:17 2003 UTC (20 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint50f_pre
Changes since 1.157: +2 -1 lines
Diff to previous 1.157
tagging checkpoint50f_pre


Revision 1.157 - (view) (download) (annotate) - [select for diffs]
Thu May 22 03:24:12 2003 UTC (20 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.156: +3 -2 lines
Diff to previous 1.156
 o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ;
      + change Evap over land. (update aim.5l_cs output)


Revision 1.156 - (view) (download) (annotate) - [select for diffs]
Thu May 15 16:15:57 2003 UTC (20 years, 9 months ago) by adcroft
Branch: MAIN
Changes since 1.155: +10 -1 lines
Diff to previous 1.155
Recorded updates by AJA


Revision 1.155 - (view) (download) (annotate) - [select for diffs]
Wed May 14 09:22:09 2003 UTC (20 years, 9 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint50e_post
Changes since 1.154: +13 -4 lines
Diff to previous 1.154
o make KPP work with PTRACERS
 - fix gad_calc_rhs to call new routine kpp_transport_ptr, which is nearly a
   copy of kpp_transport_s
 - there is no analogue to SurfaceTendencyS, so I have to use
   gPtr(of the surface layer) instead
o add a new platform SunFire+mpi (SunFire 15000) to genmake
o make new tag checkpoint50e_post


Revision 1.154 - (view) (download) (annotate) - [select for diffs]
Tue May 13 13:32:52 2003 UTC (20 years, 9 months ago) by mlosch
Branch: MAIN
CVS Tags: checkpoint50d_post, checkpoint50e_pre
Changes since 1.153: +9 -1 lines
Diff to previous 1.153
o change kpp output from multiple-record state files to single-record state
  files analogous to write_state.F
o reduce the output frequency of cg3d-related stuff to the monitor frequency,
  analogous to the cg2d-related output.
o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, so that
o make tag checkpoint50d_post


Revision 1.153 - (view) (download) (annotate) - [select for diffs]
Mon May 12 21:16:45 2003 UTC (20 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint50c_post, checkpoint50d_pre
Changes since 1.152: +3 -1 lines
Diff to previous 1.152
checkpoint50c_post
o fix problem in ini_procs.F when using MPI (was there since checkpoint48f)


Revision 1.152 - (view) (download) (annotate) - [select for diffs]
Fri May 2 22:42:39 2003 UTC (20 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.151: +2 -1 lines
Diff to previous 1.151
o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy.


Revision 1.151 - (view) (download) (annotate) - [select for diffs]
Thu May 1 22:43:25 2003 UTC (20 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.150: +5 -1 lines
Diff to previous 1.150
o add time-average diagnostic of U*V and vertical diffusive flux for theta.
o bug fixed in convective adjustment diagnostic (multi-tile set-up).
o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries.


Revision 1.150 - (view) (download) (annotate) - [select for diffs]
Wed Apr 30 07:04:08 2003 UTC (20 years, 10 months ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint50c_pre
Changes since 1.149: +6 -1 lines
Diff to previous 1.149
checkpoint50c_pre
Merging from release1_p13:
o bug fix for pkg/seaice dynamic solver
o Added SEAICE_initialHEFF to pkg/seaice


Revision 1.149 - (view) (download) (annotate) - [select for diffs]
Thu Apr 17 15:36:50 2003 UTC (20 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint50b_post
Changes since 1.148: +10 -1 lines
Diff to previous 1.148
checkpoint50b_post
o store u*,v* in gU,V instead of in guNm1,gvNm1
o in order to put the momForcing out of the Adams-Bashforth:
  move forcing & CD-scheme calls from mom_fluxform & mom_vecinv
  to timestep.F
o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays
o re-generate output for highly sensitive test-exp:
   global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box


Revision 1.148 - (view) (download) (annotate) - [select for diffs]
Thu Apr 17 12:56:24 2003 UTC (20 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint50b_pre
Changes since 1.147: +2 -1 lines
Diff to previous 1.147
tag checkpoint50b_pre before modifying momentum timestep.


Revision 1.147 - (view) (download) (annotate) - [select for diffs]
Fri Apr 11 13:50:17 2003 UTC (20 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.146: +2 -1 lines
Diff to previous 1.146
o restore the use of momAdvection & useCoriolis flags (mom_vecinv).


Revision 1.146 - (view) (download) (annotate) - [select for diffs]
Tue Mar 25 22:48:11 2003 UTC (20 years, 11 months ago) by heimbach
Branch: MAIN
Changes since 1.145: +4 -1 lines
Diff to previous 1.145
updating.


Revision 1.145 - (view) (download) (annotate) - [select for diffs]
Fri Mar 21 23:20:36 2003 UTC (20 years, 11 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint50a_post
Changes since 1.144: +8 -1 lines
Diff to previous 1.144
updating


Revision 1.144 - (view) (download) (annotate) - [select for diffs]
Sat Mar 8 00:35:53 2003 UTC (21 years ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint50
Changes since 1.143: +11 -3 lines
Diff to previous 1.143
tagging half a century.


Revision 1.143 - (view) (download) (annotate) - [select for diffs]
Thu Mar 6 00:48:52 2003 UTC (21 years ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint49
Changes since 1.142: +39 -1 lines
Diff to previous 1.142
updating.


Revision 1.142 - (view) (download) (annotate) - [select for diffs]
Wed Mar 5 00:59:10 2003 UTC (21 years ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint48i_post
Changes since 1.141: +2 -2 lines
Diff to previous 1.141
updating.


Revision 1.141 - (view) (download) (annotate) - [select for diffs]
Fri Feb 28 05:21:22 2003 UTC (21 years ago) by heimbach
Branch: MAIN
Changes since 1.140: +19 -1 lines
Diff to previous 1.140
tagging checkpoint49


Revision 1.140 - (view) (download) (annotate) - [select for diffs]
Fri Feb 28 02:09:29 2003 UTC (21 years ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint48h_post
Changes since 1.139: +2 -2 lines
Diff to previous 1.139
tagging checkpoint48h_post before commiting AD-related changes.


Revision 1.139 - (view) (download) (annotate) - [select for diffs]
Thu Feb 27 23:03:55 2003 UTC (21 years ago) by dimitri
Branch: MAIN
Changes since 1.138: +2 -2 lines
Diff to previous 1.138
Modified File doc/tag-index


Revision 1.138 - (view) (download) (annotate) - [select for diffs]
Thu Feb 27 22:34:38 2003 UTC (21 years ago) by dimitri
Branch: MAIN
Changes since 1.137: +2 -1 lines
Diff to previous 1.137
o SEAICE_WRITE_PICKUP needs to be called before WRITE_CHECKPOINT


Revision 1.137 - (view) (download) (annotate) - [select for diffs]
Wed Feb 26 03:29:08 2003 UTC (21 years ago) by jmc
Branch: MAIN
Changes since 1.136: +2 -1 lines
Diff to previous 1.136
o improve "ini_p_ground" when using finite difference form for calc_phi_hyd


Revision 1.136 - (view) (download) (annotate) - [select for diffs]
Tue Feb 25 06:35:46 2003 UTC (21 years ago) by dimitri
Branch: MAIN
Changes since 1.135: +5 -1 lines
Diff to previous 1.135
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F
o Added SEAICE_initialHEFF to pkg/seaice


Revision 1.135 - (view) (download) (annotate) - [select for diffs]
Tue Feb 18 19:19:56 2003 UTC (21 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48g_post
Changes since 1.134: +15 -1 lines
Diff to previous 1.134
checkpoint48g_post
--- EOS:
o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF
  store total Potential in totPhyHyd for diagnostics & EOS.
o fix restart and overlap Pb when using Z-coord and EOS funct. of P
--- Pressure/geopotential gradient:
o use Ro_surf & R_low instead of hFac in cal_phi_hyd:
o NLFS + p-coord.: eta*Alpha' is not longer lagging 1.time-step behind
  ( changes results of global_ocean_pressure )
o NLFS + z-coord.: add eta*Rho' contribution.
o accurate phiHyd when using interface-W at the middle between 2 centers
 ( changes results of ideal_2D_oce )
o includes r* 2nd term in potential gradient.


Revision 1.134 - (view) (download) (annotate) - [select for diffs]
Tue Feb 18 05:33:53 2003 UTC (21 years ago) by dimitri
Branch: MAIN
CVS Tags: checkpoint48f_post
Changes since 1.133: +29 -1 lines
Diff to previous 1.133
Merging from release1_p12:
o Modifications for using pkg/exf with pkg/seaice
  - improved description of the various forcing configurations
  - added basic radiation bulk formulae to pkg/exf
  - units/sign fix for evap computation in exf_getffields.F
  - updated verification/global_with_exf/results/output.txt
o Added pkg/sbo for computing IERS Special Bureau for the Oceans
  (SBO) core products, including oceanic mass, center-of-mass,
  angular, and bottom pressure (see pkg/sbo/README.sbo).
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F
  to avoid negative values in shallow regions.
  - updated verification/natl_box/results/output.txt
  - updated verification/lab_sea/results/output.txt
o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F
o Added useSingleCpuIO option (see PARAMS.h).
o Updated useSingleCpuIO option in mdsio_writefield.F to
  work with multi-field files, e.g., for single-file pickup.
o pkg/seaice:
  - bug fix in growth.F: QNET for no shortwave case
  - added HeffFile for specifying initial sea-ice thickness
  - changed SEAICE_EXTERNAL_FLUXES wind stress implementation
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf,
  kpp_transport_t.F, forward_step.F, and the_main_loop.F
o pkg/seaice:
  - adjoint-friendly modifications
  - added a SEAICE_WRITE_PICKUP at end of the_model_main.F


Revision 1.133 - (view) (download) (annotate) - [select for diffs]
Wed Feb 12 17:06:01 2003 UTC (21 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48e_post
Changes since 1.132: +3 -2 lines
Diff to previous 1.132
 tag checkpoint48e_post


Revision 1.132 - (view) (download) (annotate) - [select for diffs]
Tue Feb 11 04:32:12 2003 UTC (21 years ago) by jmc
Branch: MAIN
Changes since 1.131: +9 -1 lines
Diff to previous 1.131
o dynamics: change definition of computational domain & adapt mom_fluxform
  accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2.
o following exp works with Olx=Oly=2 (and pass through checkbounds option):
    adjust_nlfs.cs-32x32x1 adjustment.128x64x1 adjustment.cs-32x32x1
    exp0 exp1 exp2 exp4 exp5 hs94.cs-32x32x5 hs94.128x64x5
    global_ocean.90x40x15 global_with_exf global_ocean_pressure
    inverted_barometer solid-body.cs-32x32x1
  (high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure)


Revision 1.131 - (view) (download) (annotate) - [select for diffs]
Sun Feb 9 03:01:58 2003 UTC (21 years ago) by jmc
Branch: MAIN
Changes since 1.130: +3 -1 lines
Diff to previous 1.130
o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post)


Revision 1.130 - (view) (download) (annotate) - [select for diffs]
Sun Feb 9 02:31:57 2003 UTC (21 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48d_post
Changes since 1.129: +9 -1 lines
Diff to previous 1.129
checkpoint48d_post
o in preparation for r*:
 a) use pre-computed gradient of hydrostatic potential:
    changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce
 b) move phi0surf from calc_phi_hyd to calc_grad_phi_hyd:
    => affects results of glob_oce_pressure (different truncation error)
  update output.txt of ideal_2D_oce & global_ocean_pressure


Revision 1.129 - (view) (download) (annotate) - [select for diffs]
Sat Feb 8 03:45:30 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48d_pre
Changes since 1.128: +8 -1 lines
Diff to previous 1.128
checkpoint48d_pre
o in preparation for r*:
  new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient.
  pass the 2 comp. of the grad. as arguments to momentum S/R.
  but for the moment, only used if it does not change the results.
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP


Revision 1.128 - (view) (download) (annotate) - [select for diffs]
Thu Feb 6 22:43:09 2003 UTC (21 years, 1 month ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint48c_post
Changes since 1.127: +6 -1 lines
Diff to previous 1.127
tagging checkpoint48c_post
purely adjoint-related
(bracketed between 48c_pre/post)


Revision 1.127 - (view) (download) (annotate) - [select for diffs]
Thu Jan 30 18:35:42 2003 UTC (21 years, 1 month ago) by adcroft
Branch: MAIN
Changes since 1.126: +2 -1 lines
Diff to previous 1.126
Logging addition of tidal_basin_2d


Revision 1.126 - (view) (download) (annotate) - [select for diffs]
Thu Jan 30 00:12:34 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.125: +3 -1 lines
Diff to previous 1.125
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented)


Revision 1.125 - (view) (download) (annotate) - [select for diffs]
Mon Jan 27 21:42:19 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48b_post
Changes since 1.124: +2 -1 lines
Diff to previous 1.124
checkpoint48b_post


Revision 1.124 - (view) (download) (annotate) - [select for diffs]
Sun Jan 26 21:38:04 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.123: +6 -1 lines
Diff to previous 1.123
o r* coordinate added in #ifdef NONLIN_FRSURF block.
 (modification to pressure gradient not yet implemented)
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports
  (for U & V) that are used for vertical advection of momentum.


Revision 1.123 - (view) (download) (annotate) - [select for diffs]
Fri Jan 24 17:55:25 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48a_post
Changes since 1.122: +7 -1 lines
Diff to previous 1.122
checkpoint48a_post
o In preparation for r*, use temp. array to compute vertical transport
   in flux-form momentum pkg. => change results of few test-exp.
  Update output of: exp4, exp5, front_relax, global_ocean_pressure,
                    lab_sea, natl_box & plume_on_slope


Revision 1.122 - (view) (download) (annotate) - [select for diffs]
Thu Jan 23 15:35:48 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint48
Changes since 1.121: +4 -1 lines
Diff to previous 1.121
checkpoint48


Revision 1.121 - (view) (download) (annotate) - [select for diffs]
Tue Jan 21 19:44:45 2003 UTC (21 years, 1 month ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint47j_post, checkpoint48c_pre
Changes since 1.120: +19 -1 lines
Diff to previous 1.120
tagging checkpoint47j_post


Revision 1.120 - (view) (download) (annotate) - [select for diffs]
Fri Jan 17 14:21:21 2003 UTC (21 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.119: +2 -1 lines
Diff to previous 1.119
add new exp. (ideal_2D_oce) to test "exotic" parameters and options.


Revision 1.119 - (view) (download) (annotate) - [select for diffs]
Mon Jan