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    <meta name="GENERATOR" content="Mozilla/4.74 [en]C-CCK-MCD   (Win98; U) [Netscape]"> | 
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    <title>manual</title> | 
    <title>manual</title> | 
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 <body bgcolor="#FFFFFF"> | 
 <body bgcolor="#FFFFFF"> | 
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 <li> | 
 <li> | 
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 <b><font size=+1><a href="manual/discrete.html">Discretization and Algorithm</a></font></b></li> | 
 <b><font size=+1><a href="manual/discrete.html">Discretization and Algorithm</a></font></b></li> | 
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  | 
  | 
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 <br>describes the spatial and temporal discretization of the model equations | 
 <br>Describes the spatial and temporal discretization of the model equations | 
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 <li> | 
 <li> | 
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 <b><font size=+1><a href="manual/getting.html">Getting started and using | 
 <b><font size=+1><a href="manual/getting.html">Getting started and using | 
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 the MITgcm</a></font></b></li> | 
 the MITgcm</a></font></b></li> | 
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  | 
  | 
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 <br>describes how to <a href="manual/obtaining.html">download</a>, | 
 <br>Describes how to <a href="manual/obtaining.html">download</a>, | 
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 <a href="manual/compiling.html">compile</a>, | 
 <a href="manual/compiling.html">compile</a>, | 
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 <a href="manual/running.html">run</a> | 
 <a href="manual/running.html">run</a> | 
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 and <a href="manual/doing.html">modify</a> the model. | 
 and <a href="manual/doing.html">modify</a> the model. | 
| 50 | 
 <li> | 
 <li> | 
| 51 | 
 <b><font size=+1><a href="manual/sarch.html">Software Architecture</a></font></b></li> | 
 <b><font size=+1><a href="manual/sarch.html">Software Architecture</a></font></b></li> | 
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  | 
  | 
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 <br>describes the software <a href="manual/wrapper.html">infrastructure</a> | 
 <br>Describes the software <a href="manual/wrapper.html">infrastructure</a> | 
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 for | 
 for | 
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 <a href="manual/using_wrapper.html">running on parallel systems</a>. | 
 <a href="manual/using_wrapper.html">running on parallel systems</a>. | 
| 56 | 
 <li> | 
 <li> | 
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 <b><font size=+1><a href="manual/autodiff.html">Automatic Differentiation</a></font></b></li> | 
 <b><font size=+1><a href="manual/autodiff.html">Automatic Differentiation</a></font></b></li> | 
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  | 
  | 
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 <br>describes how to generate the adjoint and tangent linear forms of the | 
 <br>Describes how to generate the adjoint and tangent linear forms of the | 
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 model. | 
 model. | 
| 61 | 
 <li> | 
 <li> | 
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 <b><font size=+1><a href="manual/packages.html">Physical Parameterizations | 
 <b><font size=+1><a href="manual/packages.html">Physical Parameterizations | 
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 and Packages</a></font></b></li> | 
 and Packages</a></font></b></li> | 
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  | 
  | 
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 <br>describes the optional parameterizations and features available in | 
 <br>Describes the optional parameterizations and features available in | 
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 the model. | 
 the model. | 
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 <li> | 
 <li> | 
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 <b><font size=+1><a href="manual/diags.html">Diagnostics and other tools</a></font></b></li> | 
 <b><font size=+1><a href="manual/diags.html">Diagnostics and other tools</a></font></b></li> | 
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  | 
  | 
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 <br>details of off-line tools used in conjuction with the model. | 
 <br>Details of off-line tools used in conjuction with the model. | 
| 71 | 
 <li> | 
 <li> | 
| 72 | 
 <b><font size=+1><a href="manual/ecco.html">Interface with ECCO</a></font></b></li> | 
 <b><font size=+1><a href="manual/ecco.html">Interface with ECCO</a></font></b></li> | 
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  | 
  | 
| 74 | 
 <br>describes the interface of MITgcm in the <a href="http://www.ecco-group.org" target="idontexist">ECCO</a> | 
 <br>Describes the interface of MITgcm in the <a href="http://www.ecco-group.org" target="idontexist">ECCO</a> | 
| 75 | 
 suite of optimization software tailored to large-scale ocean state-estimation</ol> | 
 suite of optimization software tailored to large-scale ocean state-estimation</ol> | 
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 Jump to the full <a href="manual/contents.html">table of contents</a>. | 
 Jump to the full <a href="manual/contents.html">table of contents</a>. | 
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 <p>The manual is also downloadable in <a href="manual.ps.gz">PostScript</a> | 
 <p>The manual is also downloadable in <a href="manual.ps.gz">PostScript</a> |