| 45 | 
 <b><font size=+1><a href="manual/getting.html">Getting started and using | 
 <b><font size=+1><a href="manual/getting.html">Getting started and using | 
| 46 | 
 the MITgcm</a></font></b></li> | 
 the MITgcm</a></font></b></li> | 
| 47 | 
  | 
  | 
| 48 | 
 <br>describes how to download, compile, run and modify the model | 
 <br>describes how to <a href=../online_documents/manual/obtaining.html> | 
| 49 | 
  | 
 download</a>,  | 
| 50 | 
  | 
 <a href=../online_documents/manual/compiling.html>compile</a>,  | 
| 51 | 
  | 
 <a href=../online_documents/manual/running.html>run</a> and  | 
| 52 | 
  | 
 <a href=../online_documents/manual/doing.html>modify</a> the model. | 
| 53 | 
 <li> | 
 <li> | 
| 54 | 
 <b><font size=+1><a href="manual/sarch.html">Software Architecture</a></font></b></li> | 
 <b><font size=+1><a href="manual/sarch.html">Software Architecture</a></font></b></li> | 
| 55 | 
  | 
  | 
| 56 | 
 <br><font size=-1>describes the software used for implementing of the model | 
 <br><font >describes the software <a href=../online_documents/manual/wrapper.html>infrastructure</a> used for deploying the model  | 
| 57 | 
 on many different machines</font> | 
 efficiently on a wide range of parallel and uniprocessor machines. | 
| 58 | 
  | 
 <a href=../online_documents/manual/using_wrapper.html>Running on parallel | 
| 59 | 
  | 
 systems</a> is discussed here. | 
| 60 | 
  | 
 </font> | 
| 61 | 
 <li> | 
 <li> | 
| 62 | 
 <b><font size=+1><a href="manual/autodiff.html">Automatic Differentiation</a></font></b></li> | 
 <b><font size=+1><a href="manual/autodiff.html">Automatic Differentiation</a></font></b></li> | 
| 63 | 
  | 
  | 
| 64 | 
 <br>describes how to generate the adjoint and tangent linear forms of the | 
 <br>describes how to generate the adjoint and tangent linear forms of the | 
| 65 | 
 model | 
 model. | 
| 66 | 
 <li> | 
 <li> | 
| 67 | 
 <b><font size=+1><a href="manual/packages.html">Physical Parameterizations | 
 <b><font size=+1><a href="manual/packages.html">Physical Parameterizations | 
| 68 | 
 and Packages</a></font></b></li> | 
 and Packages</a></font></b></li> | 
| 69 | 
  | 
  | 
| 70 | 
 <br>describes the optional parameterizations and features supplied in the | 
 <br>describes the optional parameterizations and features supplied in the | 
| 71 | 
 model | 
 model. | 
| 72 | 
 <li> | 
 <li> | 
| 73 | 
 <b><font size=+1><a href="manual/diags.html">Diagnostics and other tools</a></font></b></li> | 
 <b><font size=+1><a href="manual/diags.html">Diagnostics and other tools</a></font></b></li> | 
| 74 | 
  | 
  | 
| 75 | 
 <br>off-line tools used in conjuction with the model | 
 <br>details of off-line tools used in conjuction with the model. | 
| 76 | 
 <li> | 
 <li> | 
| 77 | 
 <b><font size=+1><a href="manual/ecco.html">Interface with ECCO</a></font></b></li> | 
 <b><font size=+1><a href="manual/ecco.html">Interface with ECCO</a></font></b></li> | 
| 78 | 
  | 
  | 
| 79 | 
 <br>describes the relationship to the ECCO NOPP node project</ol> | 
 <br>describes the interface to the  | 
| 80 | 
  | 
 <A href=http://www.ecco-group.org target=idontexist>ECCO</a> environment | 
| 81 | 
  | 
 (a custom suite of | 
| 82 | 
  | 
 optimization software tailored to large-scale ocean  | 
| 83 | 
  | 
 state-estimation). </ol> | 
| 84 | 
 or jump to the full <a href="manual/contents.html">table of contents</a>.The | 
 or jump to the full <a href="manual/contents.html">table of contents</a>.The | 
| 85 | 
 manual is also downloadable in <a href="manual.ps.gz">PostScript</a> and | 
 manual is also downloadable in <a href="manual.ps.gz">PostScript</a> and | 
| 86 | 
 <a href="manual.pdf">PDF</a>. | 
 <a href="manual.pdf">PDF</a>. |