#TOC Entry REPLACE PATTERN #The following are used to preformat the table of contents Installation _INSTALL_ ^3. Getting started and using the MITgcm Download _DOWNLOAD_ ^<TITLE>3.* Obtaining the code Compilation _COMPILATION_ ^<TITLE>3.* Building the code Running the model _RUNNING_ ^<TITLE>3.* Running the model Customization _CUSTOMIZATION_ ^<TITLE>3.* Doing it yourself: customizing the code Tutorials _TUTORIALS_ ^<TITLE>3.* Tutorials Barotropic Gyre _BAROTROPIC_ ^<TITLE>3.* Barotropic Ocean Gyre In Cartesian Coordinates Baroclinic Gyre _BAROCLINIC_ ^<TITLE>3.* Four Layer Baroclinic Ocean Gyre In Spherical Coordinates Global Ocean _GLOBAL_ ^<TITLE>3.* Global Ocean Simulation at 4 Held Suarez Atmosphe _HELD_ ^<TITLE>3.* Held-Suarez Atmospheric Simulation at 2.8 Open Ocean Convectio _OPEN_ ^<TITLE>3.* Surface Driven Convection Shelf Convection _SHELF_ ^<TITLE>3.* Gravity Plume Tracer injection _TRACERINJ_ ^<TITLE>3.* Centennial Time Scale # Parallel Global Ocea _PARALLEL_ ^<TITLE>5. Tutorial II - Parallelism Tracer Sensitivity _TRACER_ ^<TITLE>5.* Sensitivity of Air-Sea Exchange to Tracer Injection Site Documentation _DOCUMENTATION_ ^<TITLE>1. Overview of MITgcm MITgcm in Action _MITGCM_ ^<TITLE>1.* Introduction Continuous formulati _CONTINUOUS_ ^<TITLE>1.* Continuous Numerical Algorithm _NUMERICAL_ ^<TITLE>2. Discretization and Algorithm Software Architectur _SOFTWARE_ ^<TITLE>4. Software Architecture Automatic Differenti _AUTOMATIC_ ^<TITLE>5. Automatic Differentiation Optional Packages _OPTIONAL_ ^<TITLE>6. Physical Diagnostics _DIAGNOSTICS_ ^<TITLE>7. Diagnostics and tools Interface to ECCO _INTERFACE_ ^<TITLE>8. Interface with ECCO #The following are used to preformat the front_page Atmosphere _ATMOSPHERE_ ^<TITLE>1.* Global atmosphere: `Held-Suarez' benchmark Oceanic _OCEANIC_ ^<TITLE>1.* Global ocean circulation Non-Hydrostatic _NONHYDROSTATIC_ ^<TITLE>1.* Convection and mixing over topography Horizontal Orthogonal _HORIZONTAL_ ^<TITLE>2.* Vector invariant momentum equations Finite Volume _FINITE_ fig:finite-volumes Physical Parameteriz _PHYSICAL_ ^<TITLE>6. Physical Tangent Linear _TANGENT_ ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm Domain Decomposition _DOMAIN_ The three level domain decomposition #Documentation - see above #Download - see above #Tutorials see above #Browse Code - see above #The following are used to preformat the Quicklinks menu AD _AD_ ^<TITLE>5. Automatic Differentiation Adjoint _ADJOINT_ ^<TITLE>5.1.2 Reverse or adjoint sensitivity Atmospheric _ATMOSPHERIC_ ^<TITLE>1.4.1 Hydrostatic CVS _CVS_ ^<TITLE>3.2 Obtaining the code Flux-form _FLUX_ ^<TITLE>2.13 Flux-form momentum equations GM/Redi _GM_ ^<TITLE>6.1 Gent/McWiliams/Redi SGS Eddy parameterization KPP _KPP_ ^<TITLE>6.2 Ocean vertical mixing Linear Advection _LINEAR_ ^<TITLE>2.16 Linear advection schemes MATLAB _MATLAB_ ^<TITLE>7.1.2 utils/matlab Nonlinear Advection _NONLINEAR_ ^<TITLE>2.17 Non-linear advection schemes Ocean Equations _OCEANEQ_ ^<TITLE>1.5.1 Equations of motion for the ocean Operators _OPERATORS_ ^<TITLE>1.6 Appendix:OPERATORS #Runtime Diagnostics _DIAGNOSTICS ^<TITLE>7. Diagnostics and tools Starting/Restarting _STARTING_ ^<TITLE>3.6 Running the model Tangent-linear _TANGENT_ ^<TITLE>5.1.1 Forward or direct Time-stepping _TIMESTEP_ ^<TITLE>2.1 Time-stepping MPI _MPI_ ^<TITLE>4.2.7 Distributed memory Threads _THREADS_ ^<TITLE>4.2.6 Shared memory Vector Invariant _VECTOR_ ^<TITLE>2.14 Vector invariant momentum equations WRAPPER _WRAPPER_ ^<TITLE>4.2 WRAPPER