buildweb/program_files/toc2pattern.txt

#TOC Entry            REPLACE               PATTERN
#The following are used to preformat the table of contents
Installation          _INSTALL_             ^<TITLE>3. Getting started and using the MITgcm
 Download             _DOWNLOAD_            ^<TITLE>3.* Obtaining the code
 Compilation          _COMPILATION_         ^<TITLE>3.* Building the code
 Running the model    _RUNNING_             ^<TITLE>3.* Running the model
 Customization        _CUSTOMIZATION_       ^<TITLE>3.* Doing it yourself: customizing the code
Tutorials             _TUTORIALS_           ^<TITLE>3.* Tutorials
 Barotropic Gyre      _BAROTROPIC_          ^<TITLE>3.* Barotropic Ocean Gyre In Cartesian Coordinates
 Baroclinic Gyre      _BAROCLINIC_          ^<TITLE>3.* Four Layer Baroclinic Ocean Gyre In Spherical Coordinates
 Global Ocean         _GLOBAL_              ^<TITLE>3.* Global Ocean Simulation at 4
 Held Suarez Atmosphe _HELD_                ^<TITLE>3.* Held-Suarez Atmospheric Simulation at 2.8
 Open Ocean Convectio _OPEN_                ^<TITLE>3.* Surface Driven Convection
 Shelf Convection     _SHELF_               ^<TITLE>3.* Gravity Plume
 Tracer injection     _TRACERINJ_           ^<TITLE>3.* Centennial Time Scale
# Parallel Global Ocea _PARALLEL_            ^<TITLE>5. Tutorial II - Parallelism
 Tracer Sensitivity   _TRACER_              ^<TITLE>5.* Sensitivity of Air-Sea Exchange to Tracer Injection Site
Documentation         _DOCUMENTATION_       ^<TITLE>1. Overview of MITgcm
 MITgcm in Action     _MITGCM_              ^<TITLE>1.* Introduction
 Continuous formulati _CONTINUOUS_          ^<TITLE>1.* Continuous
 Numerical Algorithm  _NUMERICAL_           ^<TITLE>2. Discretization and Algorithm
 Software Architectur _SOFTWARE_            ^<TITLE>4. Software Architecture
 Automatic Differenti _AUTOMATIC_           ^<TITLE>5. Automatic Differentiation
 Optional Packages    _OPTIONAL_            ^<TITLE>6. Physical
 Diagnostics          _DIAGNOSTICS_         ^<TITLE>7. Diagnostics and tools
 Interface to ECCO    _INTERFACE_           ^<TITLE>8. Interface with ECCO
#The following are used to preformat the front_page
Atmosphere            _ATMOSPHERE_          ^<TITLE>1.* Global atmosphere: `Held-Suarez' benchmark
Oceanic               _OCEANIC_              ^<TITLE>1.* Global ocean circulation
Non-Hydrostatic       _NONHYDROSTATIC_       ^<TITLE>1.* Convection and mixing over topography
Horizontal Orthogonal _HORIZONTAL_           ^<TITLE>2.* Vector invariant momentum equations
Finite Volume         _FINITE_               fig:finite-volumes
Physical Parameteriz  _PHYSICAL_             ^<TITLE>6. Physical
Tangent Linear        _TANGENT_              ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm
Domain Decomposition  _DOMAIN_               The three level domain decomposition
#Documentation - see above
#Download - see above
#Tutorials see above
#Browse Code - see above
#The following are used to preformat the Quicklinks menu
AD                    _AD_                   ^<TITLE>5. Automatic Differentiation
Adjoint               _ADJOINT_              ^<TITLE>5.1.2 Reverse or adjoint sensitivity
Atmospheric           _ATMOSPHERIC_          ^<TITLE>1.4.1 Hydrostatic
CVS                   _CVS_                 ^<TITLE>3.2 Obtaining the code
Flux-form             _FLUX_                 ^<TITLE>2.13 Flux-form momentum equations
GM/Redi               _GM_                   ^<TITLE>6.1 Gent/McWiliams/Redi SGS Eddy parameterization
KPP                   _KPP_                  ^<TITLE>6.2 Ocean vertical mixing
Linear Advection      _LINEAR_               ^<TITLE>2.16 Linear advection schemes
MATLAB                _MATLAB_               ^<TITLE>7.1.2 utils/matlab
Nonlinear Advection   _NONLINEAR_            ^<TITLE>2.17 Non-linear advection schemes
Ocean Equations       _OCEANEQ_              ^<TITLE>1.5.1 Equations of motion for the ocean
Operators             _OPERATORS_            ^<TITLE>1.6 Appendix:OPERATORS
#Runtime Diagnostics  _DIAGNOSTICS           ^<TITLE>7. Diagnostics and tools
Starting/Restarting   _STARTING_             ^<TITLE>3.6 Running the model
Tangent-linear        _TANGENT_              ^<TITLE>5.1.1 Forward or direct
Time-stepping         _TIMESTEP_             ^<TITLE>2.1 Time-stepping
MPI                   _MPI_                  ^<TITLE>4.2.7 Distributed memory
Threads               _THREADS_              ^<TITLE>4.2.6 Shared memory
Vector Invariant      _VECTOR_               ^<TITLE>2.14 Vector invariant momentum equations
WRAPPER               _WRAPPER_              ^<TITLE>4.2 WRAPPER
1	#TOC Entry REPLACE PATTERN
2	#The following are used to preformat the table of contents
3	Installation _INSTALL_ ^<TITLE>3. Getting started and using the MITgcm
4	Download _DOWNLOAD_ ^<TITLE>3.* Obtaining the code
5	Compilation _COMPILATION_ ^<TITLE>3.* Building the code
6	Running the model _RUNNING_ ^<TITLE>3.* Running the model
7	Customization _CUSTOMIZATION_ ^<TITLE>3.* Doing it yourself: customizing the code
8	Tutorials _TUTORIALS_ ^<TITLE>3.* Tutorials
9	Barotropic Gyre _BAROTROPIC_ ^<TITLE>3.* Barotropic Ocean Gyre In Cartesian Coordinates
10	Baroclinic Gyre _BAROCLINIC_ ^<TITLE>3.* Four Layer Baroclinic Ocean Gyre In Spherical Coordinates
11	Global Ocean _GLOBAL_ ^<TITLE>3.* Global Ocean Simulation at 4
12	Held Suarez Atmosphe _HELD_ ^<TITLE>3.* Held-Suarez Atmospheric Simulation at 2.8
13	Open Ocean Convectio _OPEN_ ^<TITLE>3.* Surface Driven Convection
14	Shelf Convection _SHELF_ ^<TITLE>3.* Gravity Plume
15	Tracer injection _TRACERINJ_ ^<TITLE>3.* Centennial Time Scale
16	# Parallel Global Ocea _PARALLEL_ ^<TITLE>5. Tutorial II - Parallelism
17	Tracer Sensitivity _TRACER_ ^<TITLE>5.* Sensitivity of Air-Sea Exchange to Tracer Injection Site
18	Documentation _DOCUMENTATION_ ^<TITLE>1. Overview of MITgcm
19	MITgcm in Action _MITGCM_ ^<TITLE>1.* Introduction
20	Continuous formulati _CONTINUOUS_ ^<TITLE>1.* Continuous
21	Numerical Algorithm _NUMERICAL_ ^<TITLE>2. Discretization and Algorithm
22	Software Architectur _SOFTWARE_ ^<TITLE>4. Software Architecture
23	Automatic Differenti _AUTOMATIC_ ^<TITLE>5. Automatic Differentiation
24	Optional Packages _OPTIONAL_ ^<TITLE>6. Physical
25	Diagnostics _DIAGNOSTICS_ ^<TITLE>7. Diagnostics and tools
26	Interface to ECCO _INTERFACE_ ^<TITLE>8. Interface with ECCO
27	#The following are used to preformat the front_page
28	Atmosphere _ATMOSPHERE_ ^<TITLE>1.* Global atmosphere: `Held-Suarez' benchmark
29	Oceanic _OCEANIC_ ^<TITLE>1.* Global ocean circulation
30	Non-Hydrostatic _NONHYDROSTATIC_ ^<TITLE>1.* Convection and mixing over topography
31	Horizontal Orthogonal _HORIZONTAL_ ^<TITLE>2.* Vector invariant momentum equations
32	Finite Volume _FINITE_ fig:finite-volumes
33	Physical Parameteriz _PHYSICAL_ ^<TITLE>6. Physical
34	Tangent Linear _TANGENT_ ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm
35	Domain Decomposition _DOMAIN_ The three level domain decomposition
36	#Documentation - see above
37	#Download - see above
38	#Tutorials see above
39	#Browse Code - see above
40	#The following are used to preformat the Quicklinks menu
41	AD _AD_ ^<TITLE>5. Automatic Differentiation
42	Adjoint _ADJOINT_ ^<TITLE>5.1.2 Reverse or adjoint sensitivity
43	Atmospheric _ATMOSPHERIC_ ^<TITLE>1.4.1 Hydrostatic
44	CVS _CVS_ ^<TITLE>3.2 Obtaining the code
45	Flux-form _FLUX_ ^<TITLE>2.13 Flux-form momentum equations
46	GM/Redi _GM_ ^<TITLE>6.1 Gent/McWiliams/Redi SGS Eddy parameterization
47	KPP _KPP_ ^<TITLE>6.2 Ocean vertical mixing
48	Linear Advection _LINEAR_ ^<TITLE>2.16 Linear advection schemes
49	MATLAB _MATLAB_ ^<TITLE>7.1.2 utils/matlab
50	Nonlinear Advection _NONLINEAR_ ^<TITLE>2.17 Non-linear advection schemes
51	Ocean Equations _OCEANEQ_ ^<TITLE>1.5.1 Equations of motion for the ocean
52	Operators _OPERATORS_ ^<TITLE>1.6 Appendix:OPERATORS
53	#Runtime Diagnostics _DIAGNOSTICS ^<TITLE>7. Diagnostics and tools
54	Starting/Restarting _STARTING_ ^<TITLE>3.6 Running the model
55	Tangent-linear _TANGENT_ ^<TITLE>5.1.1 Forward or direct
56	Time-stepping _TIMESTEP_ ^<TITLE>2.1 Time-stepping
57	MPI _MPI_ ^<TITLE>4.2.7 Distributed memory
58	Threads _THREADS_ ^<TITLE>4.2.6 Shared memory
59	Vector Invariant _VECTOR_ ^<TITLE>2.14 Vector invariant momentum equations
60	WRAPPER _WRAPPER_ ^<TITLE>4.2 WRAPPER