buildweb/program_files/toc2pattern.txt

#TOC Entry            REPLACE               PATTERN
#The following are used to preformat the table of contents
Installation          _INSTALL_             CMIREDIR:getting_started_with_mitgcm:
 Download             _DOWNLOAD_            CMIREDIR:obtainingCode:
 Compilation          _COMPILATION_         CMIREDIR:buildingCode:
 Running the model    _RUNNING_             CMIREDIR:runModel:
 Customization        _CUSTOMIZATION_       CMIREDIR:customizing_mitgcm:
Tutorials             _TUTORIALS_           ^<TITLE>3.* Tutorials
 Barotropic Gyre      _BAROTROPIC_          CMIREDIR:eg-baro:
 Baroclinic Gyre      _BAROCLINIC_          CMIREDIR:eg-fourlayer:
 Global Ocean         _GLOBAL_              CMIREDIR:eg-global:
 Held Suarez Atmosphe _HELD_                CMIREDIR:eg-hs:
 Open Ocean Convectio _OPEN_                CMIREDIR:eg-bconv:
 Shelf Convection     _SHELF_               CMIREDIR:eg-gravityplume:
 Tracer injection     _TRACERINJ_           CMIREDIR:eg-simple-tracer:
# Parallel Global Ocea _PARALLEL_            ^<TITLE>5. Tutorial II - Parallelism
 Tracer Sensitivity   _TRACER_              CMIREDIR:eg-simple-tracer:
Documentation         _DOCUMENTATION_       ^<TITLE>1. Overview of MITgcm
 MITgcm in Action     _MITGCM_              ^<TITLE>1.* Introduction
 Continuous formulati _CONTINUOUS_          ^<TITLE>1.* Continuous
 Numerical Algorithm  _NUMERICAL_           ^<TITLE>2. Discretization and Algorithm
 Software Architectur _SOFTWARE_            ^<TITLE>4. Software Architecture
 Automatic Differenti _AUTOMATIC_           ^<TITLE>5. Automatic Differentiation
 Optional Packages    _OPTIONAL_            ^<TITLE>6. Physical
 Diagnostics          _DIAGNOSTICS_         CMIREDIR:processing_tools:
 Interface to ECCO    _INTERFACE_           ^<TITLE>8. Interface with ECCO
#The following are used to preformat the front_page
Atmosphere            _ATMOSPHERE_          CMIREDIR:atmospheric_example:
Oceanic               _OCEANIC_              ^<TITLE>1.* Global ocean circulation
Non-Hydrostatic       _NONHYDROSTATIC_       ^<TITLE>1.* Convection and mixing over topography
Horizontal Orthogonal _HORIZONTAL_           ^<TITLE>2.* Vector invariant momentum equations
Finite Volume         _FINITE_               fig:finite-volumes
Physical Parameteriz  _PHYSICAL_             ^<TITLE>6. Physical
Tangent Linear        _TANGENT_              ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm
Domain Decomposition  _DOMAIN_               The three level domain decomposition
#Documentation - see above
#Download - see above
#Tutorials see above
#Browse Code - see above
#The following are used to preformat the Quicklinks menu
AD                    _AD_                   ^<TITLE>5. Automatic Differentiation
Adjoint               _ADJOINT_              ^<TITLE>5.1.2 Reverse or adjoint sensitivity
Atmospheric           _ATMOSPHERIC_          ^<TITLE>1.4.1 Hydrostatic
CVS                   _CVS_                 ^<TITLE>3.2 Obtaining the code
Flux-form             _FLUX_                 ^<TITLE>2.13 Flux-form momentum equations
GM/Redi               _GM_                   CMIREDIR:gmredi:
KPP                   _KPP_                  CMIREDIR:package_kpp:
Linear Advection      _LINEAR_               ^<TITLE>2.16 Linear advection schemes
MATLAB                _MATLAB_               ^<TITLE>7.1.2 utils/matlab
Nonlinear Advection   _NONLINEAR_            ^<TITLE>2.17 Non-linear advection schemes
Ocean Equations       _OCEANEQ_              ^<TITLE>1.5.1 Equations of motion for the ocean
Operators             _OPERATORS_            ^<TITLE>1.6 Appendix:OPERATORS
#Runtime Diagnostics  _DIAGNOSTICS           ^<TITLE>7. Diagnostics and tools
Starting/Restarting   _STARTING_             CMIREDIR:runModel:
Tangent-linear        _TANGENT_              ^<TITLE>5.1.1 Forward or direct
Time-stepping         _TIMESTEP_             ^<TITLE>2.1 Time-stepping
MPI                   _MPI_                  ^<TITLE>4.2.7 Distributed memory
Threads               _THREADS_              ^<TITLE>4.2.6 Shared memory
Vector Invariant      _VECTOR_               ^<TITLE>2.14 Vector invariant momentum equations
WRAPPER               _WRAPPER_              ^<TITLE>4.2 WRAPPER
1	adcroft	1.1	#TOC Entry REPLACE PATTERN
2			#The following are used to preformat the table of contents
3	cnh	1.2	Installation _INSTALL_ CMIREDIR:getting_started_with_mitgcm:
4			Download _DOWNLOAD_ CMIREDIR:obtainingCode:
5			Compilation _COMPILATION_ CMIREDIR:buildingCode:
6	cnh	1.3	Running the model _RUNNING_ CMIREDIR:runModel:
7			Customization _CUSTOMIZATION_ CMIREDIR:customizing_mitgcm:
8	adcroft	1.1	Tutorials _TUTORIALS_ ^<TITLE>3.* Tutorials
9	cnh	1.3	Barotropic Gyre _BAROTROPIC_ CMIREDIR:eg-baro:
10			Baroclinic Gyre _BAROCLINIC_ CMIREDIR:eg-fourlayer:
11			Global Ocean _GLOBAL_ CMIREDIR:eg-global:
12			Held Suarez Atmosphe _HELD_ CMIREDIR:eg-hs:
13			Open Ocean Convectio _OPEN_ CMIREDIR:eg-bconv:
14			Shelf Convection _SHELF_ CMIREDIR:eg-gravityplume:
15			Tracer injection _TRACERINJ_ CMIREDIR:eg-simple-tracer:
16	adcroft	1.1	# Parallel Global Ocea _PARALLEL_ ^<TITLE>5. Tutorial II - Parallelism
17	cnh	1.4	Tracer Sensitivity _TRACER_ CMIREDIR:eg-simple-tracer:
18	adcroft	1.1	Documentation _DOCUMENTATION_ ^<TITLE>1. Overview of MITgcm
19			MITgcm in Action _MITGCM_ ^<TITLE>1.* Introduction
20			Continuous formulati _CONTINUOUS_ ^<TITLE>1.* Continuous
21			Numerical Algorithm _NUMERICAL_ ^<TITLE>2. Discretization and Algorithm
22			Software Architectur _SOFTWARE_ ^<TITLE>4. Software Architecture
23			Automatic Differenti _AUTOMATIC_ ^<TITLE>5. Automatic Differentiation
24			Optional Packages _OPTIONAL_ ^<TITLE>6. Physical
25	cnh	1.5	Diagnostics _DIAGNOSTICS_ CMIREDIR:processing_tools:
26	adcroft	1.1	Interface to ECCO _INTERFACE_ ^<TITLE>8. Interface with ECCO
27			#The following are used to preformat the front_page
28	cnh	1.4	Atmosphere _ATMOSPHERE_ CMIREDIR:atmospheric_example:
29	adcroft	1.1	Oceanic _OCEANIC_ ^<TITLE>1.* Global ocean circulation
30			Non-Hydrostatic _NONHYDROSTATIC_ ^<TITLE>1.* Convection and mixing over topography
31			Horizontal Orthogonal _HORIZONTAL_ ^<TITLE>2.* Vector invariant momentum equations
32			Finite Volume _FINITE_ fig:finite-volumes
33			Physical Parameteriz _PHYSICAL_ ^<TITLE>6. Physical
34			Tangent Linear _TANGENT_ ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm
35			Domain Decomposition _DOMAIN_ The three level domain decomposition
36			#Documentation - see above
37			#Download - see above
38			#Tutorials see above
39			#Browse Code - see above
40			#The following are used to preformat the Quicklinks menu
41			AD _AD_ ^<TITLE>5. Automatic Differentiation
42			Adjoint _ADJOINT_ ^<TITLE>5.1.2 Reverse or adjoint sensitivity
43			Atmospheric _ATMOSPHERIC_ ^<TITLE>1.4.1 Hydrostatic
44			CVS _CVS_ ^<TITLE>3.2 Obtaining the code
45			Flux-form _FLUX_ ^<TITLE>2.13 Flux-form momentum equations
46	cnh	1.4	GM/Redi _GM_ CMIREDIR:gmredi:
47			KPP _KPP_ CMIREDIR:package_kpp:
48	adcroft	1.1	Linear Advection _LINEAR_ ^<TITLE>2.16 Linear advection schemes
49			MATLAB _MATLAB_ ^<TITLE>7.1.2 utils/matlab
50			Nonlinear Advection _NONLINEAR_ ^<TITLE>2.17 Non-linear advection schemes
51			Ocean Equations _OCEANEQ_ ^<TITLE>1.5.1 Equations of motion for the ocean
52			Operators _OPERATORS_ ^<TITLE>1.6 Appendix:OPERATORS
53			#Runtime Diagnostics _DIAGNOSTICS ^<TITLE>7. Diagnostics and tools
54	cnh	1.4	Starting/Restarting _STARTING_ CMIREDIR:runModel:
55	adcroft	1.1	Tangent-linear _TANGENT_ ^<TITLE>5.1.1 Forward or direct
56			Time-stepping _TIMESTEP_ ^<TITLE>2.1 Time-stepping
57			MPI _MPI_ ^<TITLE>4.2.7 Distributed memory
58			Threads _THREADS_ ^<TITLE>4.2.6 Shared memory
59			Vector Invariant _VECTOR_ ^<TITLE>2.14 Vector invariant momentum equations
60			WRAPPER _WRAPPER_ ^<TITLE>4.2 WRAPPER