buildweb/program_files/toc2pattern.txt

#TOC Entry            REPLACE               PATTERN
#The following are used to preformat the table of contents
Installation          _INSTALL_             ^<TITLE>3. Getting started and using the MITgcm
 Download             _DOWNLOAD_            ^<TITLE>3.* Obtaining the code
 Compilation          _COMPILATION_         ^<TITLE>3.* Building the code
 Running the model    _RUNNING_             ^<TITLE>3.* Running the model
 Customization        _CUSTOMIZATION_       ^<TITLE>3.* Doing it yourself: customizing the code
Tutorials             _TUTORIALS_           ^<TITLE>3.* Tutorials
 Barotropic Gyre      _BAROTROPIC_          ^<TITLE>3.* Barotropic Ocean Gyre In Cartesian Coordinates
 Baroclinic Gyre      _BAROCLINIC_          ^<TITLE>3.* Four Layer Baroclinic Ocean Gyre In Spherical Coordinates
 Global Ocean         _GLOBAL_              ^<TITLE>3.* Global Ocean Simulation at 4
 Held Suarez Atmosphe _HELD_                ^<TITLE>3.* Held-Suarez Atmospheric Simulation at 2.8
 Open Ocean Convectio _OPEN_                ^<TITLE>3.* Surface Driven Convection
 Shelf Convection     _SHELF_               ^<TITLE>3.* Gravity Plume
 Tracer injection     _TRACERINJ_           ^<TITLE>3.* Centennial Time Scale
# Parallel Global Ocea _PARALLEL_            ^<TITLE>5. Tutorial II - Parallelism
 Tracer Sensitivity   _TRACER_              ^<TITLE>5.* Sensitivity of Air-Sea Exchange to Tracer Injection Site
Documentation         _DOCUMENTATION_       ^<TITLE>1. Overview of MITgcm
 MITgcm in Action     _MITGCM_              ^<TITLE>1.* Introduction
 Continuous formulati _CONTINUOUS_          ^<TITLE>1.* Continuous
 Numerical Algorithm  _NUMERICAL_           ^<TITLE>2. Discretization and Algorithm
 Software Architectur _SOFTWARE_            ^<TITLE>4. Software Architecture
 Automatic Differenti _AUTOMATIC_           ^<TITLE>5. Automatic Differentiation
 Optional Packages    _OPTIONAL_            ^<TITLE>6. Physical
 Diagnostics          _DIAGNOSTICS_         ^<TITLE>7. Diagnostics and tools
 Interface to ECCO    _INTERFACE_           ^<TITLE>8. Interface with ECCO
#The following are used to preformat the front_page
Atmosphere            _ATMOSPHERE_          ^<TITLE>1.* Global atmosphere: `Held-Suarez' benchmark
Oceanic               _OCEANIC_              ^<TITLE>1.* Global ocean circulation
Non-Hydrostatic       _NONHYDROSTATIC_       ^<TITLE>1.* Convection and mixing over topography
Horizontal Orthogonal _HORIZONTAL_           ^<TITLE>2.* Vector invariant momentum equations
Finite Volume         _FINITE_               fig:finite-volumes
Physical Parameteriz  _PHYSICAL_             ^<TITLE>6. Physical
Tangent Linear        _TANGENT_              ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm
Domain Decomposition  _DOMAIN_               The three level domain decomposition
#Documentation - see above
#Download - see above
#Tutorials see above
#Browse Code - see above
#The following are used to preformat the Quicklinks menu
AD                    _AD_                   ^<TITLE>5. Automatic Differentiation
Adjoint               _ADJOINT_              ^<TITLE>5.1.2 Reverse or adjoint sensitivity
Atmospheric           _ATMOSPHERIC_          ^<TITLE>1.4.1 Hydrostatic
CVS                   _CVS_                 ^<TITLE>3.2 Obtaining the code
Flux-form             _FLUX_                 ^<TITLE>2.13 Flux-form momentum equations
GM/Redi               _GM_                   ^<TITLE>6.1 Gent/McWiliams/Redi SGS Eddy parameterization
KPP                   _KPP_                  ^<TITLE>6.2 Ocean vertical mixing
Linear Advection      _LINEAR_               ^<TITLE>2.16 Linear advection schemes
MATLAB                _MATLAB_               ^<TITLE>7.1.2 utils/matlab
Nonlinear Advection   _NONLINEAR_            ^<TITLE>2.17 Non-linear advection schemes
Ocean Equations       _OCEANEQ_              ^<TITLE>1.5.1 Equations of motion for the ocean
Operators             _OPERATORS_            ^<TITLE>1.6 Appendix:OPERATORS
#Runtime Diagnostics  _DIAGNOSTICS           ^<TITLE>7. Diagnostics and tools
Starting/Restarting   _STARTING_             ^<TITLE>3.6 Running the model
Tangent-linear        _TANGENT_              ^<TITLE>5.1.1 Forward or direct
Time-stepping         _TIMESTEP_             ^<TITLE>2.1 Time-stepping
MPI                   _MPI_                  ^<TITLE>4.2.7 Distributed memory
Threads               _THREADS_              ^<TITLE>4.2.6 Shared memory
Vector Invariant      _VECTOR_               ^<TITLE>2.14 Vector invariant momentum equations
WRAPPER               _WRAPPER_              ^<TITLE>4.2 WRAPPER
1	adcroft	1.1	#TOC Entry REPLACE PATTERN
2			#The following are used to preformat the table of contents
3			Installation _INSTALL_ ^<TITLE>3. Getting started and using the MITgcm
4			Download _DOWNLOAD_ ^<TITLE>3.* Obtaining the code
5			Compilation _COMPILATION_ ^<TITLE>3.* Building the code
6			Running the model _RUNNING_ ^<TITLE>3.* Running the model
7			Customization _CUSTOMIZATION_ ^<TITLE>3.* Doing it yourself: customizing the code
8			Tutorials _TUTORIALS_ ^<TITLE>3.* Tutorials
9			Barotropic Gyre _BAROTROPIC_ ^<TITLE>3.* Barotropic Ocean Gyre In Cartesian Coordinates
10			Baroclinic Gyre _BAROCLINIC_ ^<TITLE>3.* Four Layer Baroclinic Ocean Gyre In Spherical Coordinates
11			Global Ocean _GLOBAL_ ^<TITLE>3.* Global Ocean Simulation at 4
12			Held Suarez Atmosphe _HELD_ ^<TITLE>3.* Held-Suarez Atmospheric Simulation at 2.8
13			Open Ocean Convectio _OPEN_ ^<TITLE>3.* Surface Driven Convection
14			Shelf Convection _SHELF_ ^<TITLE>3.* Gravity Plume
15			Tracer injection _TRACERINJ_ ^<TITLE>3.* Centennial Time Scale
16			# Parallel Global Ocea _PARALLEL_ ^<TITLE>5. Tutorial II - Parallelism
17			Tracer Sensitivity _TRACER_ ^<TITLE>5.* Sensitivity of Air-Sea Exchange to Tracer Injection Site
18			Documentation _DOCUMENTATION_ ^<TITLE>1. Overview of MITgcm
19			MITgcm in Action _MITGCM_ ^<TITLE>1.* Introduction
20			Continuous formulati _CONTINUOUS_ ^<TITLE>1.* Continuous
21			Numerical Algorithm _NUMERICAL_ ^<TITLE>2. Discretization and Algorithm
22			Software Architectur _SOFTWARE_ ^<TITLE>4. Software Architecture
23			Automatic Differenti _AUTOMATIC_ ^<TITLE>5. Automatic Differentiation
24			Optional Packages _OPTIONAL_ ^<TITLE>6. Physical
25			Diagnostics _DIAGNOSTICS_ ^<TITLE>7. Diagnostics and tools
26			Interface to ECCO _INTERFACE_ ^<TITLE>8. Interface with ECCO
27			#The following are used to preformat the front_page
28			Atmosphere _ATMOSPHERE_ ^<TITLE>1.* Global atmosphere: `Held-Suarez' benchmark
29			Oceanic _OCEANIC_ ^<TITLE>1.* Global ocean circulation
30			Non-Hydrostatic _NONHYDROSTATIC_ ^<TITLE>1.* Convection and mixing over topography
31			Horizontal Orthogonal _HORIZONTAL_ ^<TITLE>2.* Vector invariant momentum equations
32			Finite Volume _FINITE_ fig:finite-volumes
33			Physical Parameteriz _PHYSICAL_ ^<TITLE>6. Physical
34			Tangent Linear _TANGENT_ ^<TITLE>1.* Parameter sensitivity using the adjoint of MITgcm
35			Domain Decomposition _DOMAIN_ The three level domain decomposition
36			#Documentation - see above
37			#Download - see above
38			#Tutorials see above
39			#Browse Code - see above
40			#The following are used to preformat the Quicklinks menu
41			AD _AD_ ^<TITLE>5. Automatic Differentiation
42			Adjoint _ADJOINT_ ^<TITLE>5.1.2 Reverse or adjoint sensitivity
43			Atmospheric _ATMOSPHERIC_ ^<TITLE>1.4.1 Hydrostatic
44			CVS _CVS_ ^<TITLE>3.2 Obtaining the code
45			Flux-form _FLUX_ ^<TITLE>2.13 Flux-form momentum equations
46			GM/Redi _GM_ ^<TITLE>6.1 Gent/McWiliams/Redi SGS Eddy parameterization
47			KPP _KPP_ ^<TITLE>6.2 Ocean vertical mixing
48			Linear Advection _LINEAR_ ^<TITLE>2.16 Linear advection schemes
49			MATLAB _MATLAB_ ^<TITLE>7.1.2 utils/matlab
50			Nonlinear Advection _NONLINEAR_ ^<TITLE>2.17 Non-linear advection schemes
51			Ocean Equations _OCEANEQ_ ^<TITLE>1.5.1 Equations of motion for the ocean
52			Operators _OPERATORS_ ^<TITLE>1.6 Appendix:OPERATORS
53			#Runtime Diagnostics _DIAGNOSTICS ^<TITLE>7. Diagnostics and tools
54			Starting/Restarting _STARTING_ ^<TITLE>3.6 Running the model
55			Tangent-linear _TANGENT_ ^<TITLE>5.1.1 Forward or direct
56			Time-stepping _TIMESTEP_ ^<TITLE>2.1 Time-stepping
57			MPI _MPI_ ^<TITLE>4.2.7 Distributed memory
58			Threads _THREADS_ ^<TITLE>4.2.6 Shared memory
59			Vector Invariant _VECTOR_ ^<TITLE>2.14 Vector invariant momentum equations
60			WRAPPER _WRAPPER_ ^<TITLE>4.2 WRAPPER