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1 adcroft 1.1 <HTML>
2     <HEAD>
3     <TITLE>MITgcm Call Tree</TITLE>
4     </HEAD>
5     <BODY leftmargin=0 topmargin=0 marginheight=0 marginwidth=0 bgcolor=#FFFFFF>
6     <h1>
7     Browse Hypertext Code Online</h1>
8     Browse MITgcm source code in hyperlinked form.
9     <p>Select links from the calling tree below or select from the side bar
10     menu to access alphabetic lists of model subroutines and functions, runtime
11     parameters, compile time parameters and model source files.
12     <h3>
13     MITgcm Release 1 Main Call Tree</h3>
14    
15    
16     <PRE>
17     C
18     C Invocation from WRAPPER level...
19     C :
20     C :
21     C |
22     C |<A HREF=vdb/names/JZ.htm target=codeBrowserWindow>THE_MODEL_MAIN</A> :: Primary driver for the MITgcm algorithm
23     C | :: Called from WRAPPER level numerical
24     C | :: code innvocation routine. On entry
25     C | :: to THE_MODEL_MAIN separate thread and
26     C | :: separate processes will have been established.
27     C | :: Each thread and process will have a unique ID
28     C | :: but as yet it will not be associated with a
29     C | :: specific region in decomposed discrete space.
30     C |
31     C |<A HREF=vdb/names/K0.htm target=codeBrowserWindow>INITIALISE_FIXED</A> :: Set fixed model arrays such as topography,
32     C | | :: grid, solver matrices etc..
33     C | |
34     C | |<A HREF=vdb/names/K1.htm target=codeBrowserWindow>INI_PARMS</A> :: Routine to set kernel model parameters.
35     C | | :: By default kernel parameters are read from file
36     C | | :: "data" in directory in which code executes.
37     C | |
38     C | |<A HREF=vdb/names/K2.htm target=codeBrowserWindow>MON_INIT</A> :: Initialises monitor pacakge ( see pkg/monitor )
39     C | |
40     C | |<A HREF=vdb/names/K3.htm target=codeBrowserWindow>INI_GRID</A> :: Control grid array (vert. and hori.) initialisation.
41     C | | | :: Grid arrays are held and described in GRID.h.
42     C | | |
43     C | | |<A HREF=vdb/names/K4.htm target=codeBrowserWindow>INI_VERTICAL_GRID</A> :: Initialise vertical grid arrays.
44     C | | |
45     C | | |<A HREF=vdb/names/K5.htm target=codeBrowserWindow>INI_CARTESIAN_GRID</A> :: Cartesian horiz. grid initialisation
46     C | | | :: (calculate grid from kernel parameters).
47     C | | |
48     C | | |<A HREF=vdb/names/K6.htm target=codeBrowserWindow>INI_SPHERICAL_POLAR_GRID</A> :: Spherical polar horiz. grid
49     C | | | :: initialisation (calculate grid from
50     C | | | :: kernel parameters).
51     C | | |
52     C | | |<A HREF=vdb/names/K7.htm target=codeBrowserWindow>INI_CURVILINEAR_GRID</A> :: General orthogonal, structured horiz.
53     C | | :: grid initialisations. ( input from raw
54     C | | :: grid files, LONC.bin, DXF.bin etc... )
55     C | |
56     C | |<A HREF=vdb/names/K8.htm target=codeBrowserWindow>INI_DEPTHS</A> :: Read (from "bathyFile") or set bathymetry/orgography.
57     C | |-INI_LINEAR_PHSURF :: Set ref. surface Bo_surf
58     C | |
59     C | |<A HREF=vdb/names/K9.htm target=codeBrowserWindow>INI_MASKS_ETC</A> :: Derive horizontal and vertical cell fractions and
60     C | | :: land masking for solid-fluid boundaries.
61     C | |
62     C | |-INI_LINEAR_PHSURF :: Set ref. surface Bo_surf
63     C | |
64     C | |<A HREF=vdb/names/KB.htm target=codeBrowserWindow>INI_CORI</A> :: Set coriolis term. zero, f-plane, beta-plane,
65     C | | :: sphere optins are coded.
66     C | |
67     C | |-PACAKGES_BOOT :: Start up the optional package environment.
68     C | | :: Runtime selection of active packages.
69     C | |
70     C | |<A HREF=vdb/names/KD.htm target=codeBrowserWindow>PACKAGES_READPARMS</A> :: Call active package internal parameter load.
71     C | | |
72     C | | |<A HREF=vdb/names/KE.htm target=codeBrowserWindow>GMREDI_READPARMS</A> :: GM Package. see pkg/gmredi
73     C | | |<A HREF=vdb/names/KF.htm target=codeBrowserWindow>KPP_READPARMS</A> :: KPP Package. see pkg/kpp
74     C | | |<A HREF=vdb/names/KG.htm target=codeBrowserWindow>SHAP_FILT_READPARMS</A> :: Shapiro filter package. see pkg/shap_filt
75     C | | |<A HREF=vdb/names/KH.htm target=codeBrowserWindow>OBCS_READPARMS</A> :: Open bndy package. see pkg/obcs
76     C | | |-AIM_READPARMS :: Intermediate Atmos. pacakage. see pkg/aim
77     C | | |<A HREF=vdb/names/KJ.htm target=codeBrowserWindow>COST_READPARMS</A> :: Cost function package. see pkg/cost
78     C | | |<A HREF=vdb/names/KK.htm target=codeBrowserWindow>CTRL_INIT</A> :: Control vector support package. see pkg/ctrl
79     C | | |<A HREF=vdb/names/KL.htm target=codeBrowserWindow>OPTIM_READPARMS</A> :: Optimisation support package. see pkg/ctrl
80     C | | |<A HREF=vdb/names/KM.htm target=codeBrowserWindow>GRDCHK_READPARMS</A> :: Gradient check package. see pkg/grdchk
81     C | | |<A HREF=vdb/names/KN.htm target=codeBrowserWindow>ECCO_READPARMS</A> :: ECCO Support Package. see pkg/ecco
82     C | |
83     C | |<A HREF=vdb/names/25J.htm target=codeBrowserWindow>PACKAGES_CHECK</A>
84     C | | |
85     C | | |<A HREF=vdb/names/KO.htm target=codeBrowserWindow>KPP_CHECK</A> :: KPP Package. pkg/kpp
86     C | | |<A HREF=vdb/names/KP.htm target=codeBrowserWindow>OBCS_CHECK</A> :: Open bndy Pacakge. pkg/obcs
87     C | | |<A HREF=vdb/names/KQ.htm target=codeBrowserWindow>GMREDI_CHECK</A> :: GM Package. pkg/gmredi
88     C | |
89     C | |<A HREF=vdb/names/25K.htm target=codeBrowserWindow>PACKAGES_INIT_FIXED</A>
90     C | | |<A HREF=vdb/names/KR.htm target=codeBrowserWindow>OBCS_INIT_FIXED</A> :: Open bndy Package. see pkg/obcs
91     C | | |<A HREF=vdb/names/KS.htm target=codeBrowserWindow>FLT_INIT</A> :: Floats Package. see pkg/flt
92     C | |
93     C | |<A HREF=vdb/names/KT.htm target=codeBrowserWindow>ZONAL_FILT_INIT</A> :: FFT filter Package. see pkg/zonal_filt
94     C | |
95     C | |<A HREF=vdb/names/KU.htm target=codeBrowserWindow>INI_CG2D</A> :: 2d con. grad solver initialisation.
96     C | |
97     C | |<A HREF=vdb/names/KV.htm target=codeBrowserWindow>INI_CG3D</A> :: 3d con. grad solver initialisation.
98     C | |
99     C | |<A HREF=vdb/names/KW.htm target=codeBrowserWindow>CONFIG_SUMMARY</A> :: Provide synopsis of kernel setup.
100     C | :: Includes annotated table of kernel
101     C | :: parameter settings.
102     C |
103     C |<A HREF=vdb/names/KX.htm target=codeBrowserWindow>CTRL_UNPACK</A> :: Control vector support package. see pkg/ctrl
104     C |
105     C |<A HREF=vdb/names/KY.htm target=codeBrowserWindow>ADTHE_MAIN_LOOP</A> :: Derivative evaluating form of main time stepping loop
106     C ! :: Auotmatically gerenrated by TAMC/TAF.
107     C |
108     C |<A HREF=vdb/names/KZ.htm target=codeBrowserWindow>CTRL_PACK</A> :: Control vector support package. see pkg/ctrl
109     C |
110     C |<A HREF=vdb/names/L0.htm target=codeBrowserWindow>GRDCHK_MAIN</A> :: Gradient check package. see pkg/grdchk
111     C |
112     C |<A HREF=vdb/names/L1.htm target=codeBrowserWindow>THE_MAIN_LOOP</A> :: Main timestepping loop routine.
113     C | |
114     C | |<A HREF=vdb/names/L2.htm target=codeBrowserWindow>INITIALISE_VARIA</A> :: Set the initial conditions for time evolving
115     C | | | :: variables
116     C | | |
117     C | | |<A HREF=vdb/names/L3.htm target=codeBrowserWindow>INI_LINEAR_PHISURF</A> :: Set ref. surface Bo_surf
118     C | | |
119     C | | |<A HREF=vdb/names/KB.htm target=codeBrowserWindow>INI_CORI</A> :: Set coriolis term. zero, f-plane, beta-plane,
120     C | | | :: sphere optins are coded.
121     C | | |
122     C | | |<A HREF=vdb/names/KU.htm target=codeBrowserWindow>INI_CG2D</A> :: 2d con. grad solver initialisation.
123     C | | |<A HREF=vdb/names/KV.htm target=codeBrowserWindow>INI_CG3D</A> :: 3d con. grad solver initialisation.
124     C | | |<A HREF=vdb/names/L7.htm target=codeBrowserWindow>INI_MIXING</A> :: Initialise diapycnal diffusivity.
125     C | | |<A HREF=vdb/names/L8.htm target=codeBrowserWindow>INI_DYNVARS</A> :: Initialise to zero all DYNVARS.h arrays (dynamical
126     C | | | :: fields).
127     C | | |
128     C | | |<A HREF=vdb/names/L9.htm target=codeBrowserWindow>INI_FIELDS</A> :: Control initialising model fields to non-zero
129     C | | | |<A HREF=vdb/names/LA.htm target=codeBrowserWindow>INI_VEL</A> :: Initialize 3D flow field.
130     C | | | |<A HREF=vdb/names/LB.htm target=codeBrowserWindow>INI_THETA</A> :: Set model initial temperature field.
131     C | | | |<A HREF=vdb/names/LC.htm target=codeBrowserWindow>INI_SALT</A> :: Set model initial salinity field.
132     C | | | |<A HREF=vdb/names/LD.htm target=codeBrowserWindow>INI_PSURF</A> :: Set model initial free-surface height/pressure.
133     C | | |
134     C | | |<A HREF=vdb/names/LE.htm target=codeBrowserWindow>INI_TR1</A> :: Set initial tracer 1 distribution.
135     C | | |
136     C | | |<A HREF=vdb/names/LF.htm target=codeBrowserWindow>THE_CORRECTION_STEP</A> :: Step forward to next time step.
137     C | | | | :: Here applied to move restart conditions
138     C | | | | :: (saved in mid timestep) to correct level in
139     C | | | | :: time (only used for pre-c35).
140     C | | | |
141     C | | | |<A HREF=vdb/names/LG.htm target=codeBrowserWindow>CALC_GRAD_PHI_SURF</A> :: Return DDx and DDy of surface pressure
142     C | | | |<A HREF=vdb/names/LH.htm target=codeBrowserWindow>CORRECTION_STEP</A> :: Pressure correction to momentum
143     C | | | |<A HREF=vdb/names/LI.htm target=codeBrowserWindow>CYCLE_TRACER</A> :: Move tracers forward in time.
144     C | | | |-OBCS_APPLY :: Open bndy package. see pkg/obcs
145     C | | | |-SHAP_FILT_APPLY :: Shapiro filter package. see pkg/shap_filt
146     C | | | |-ZONAL_FILT_APPLY :: FFT filter package. see pkg/zonal_filt
147     C | | | |<A HREF=vdb/names/LM.htm target=codeBrowserWindow>CONVECTIVE_ADJUSTMENT</A> :: Control static instability mixing.
148     C | | | | |<A HREF=vdb/names/LN.htm target=codeBrowserWindow>FIND_RHO</A> :: Find adjacent densities.
149     C | | | | |<A HREF=vdb/names/LO.htm target=codeBrowserWindow>CONVECT</A> :: Mix static instability.
150     C | | | | |<A HREF=vdb/names/LP.htm target=codeBrowserWindow>TIMEAVE_CUMULATE</A> :: Update convection statistics.
151     C | | | |
152     C | | | |<A HREF=vdb/names/LQ.htm target=codeBrowserWindow>CALC_EXACT_ETA</A> :: Change SSH to flow divergence.
153     C | | |
154     C | | |<A HREF=vdb/names/LR.htm target=codeBrowserWindow>CONVECTIVE_ADJUSTMENT_INI</A> :: Control static instability mixing
155     C | | | | :: Extra time history interactions.
156     C | | | |
157     C | | | |<A HREF=vdb/names/LN.htm target=codeBrowserWindow>FIND_RHO</A> :: Find adjacent densities.
158     C | | | |<A HREF=vdb/names/LO.htm target=codeBrowserWindow>CONVECT</A> :: Mix static instability.
159     C | | | |<A HREF=vdb/names/LP.htm target=codeBrowserWindow>TIMEAVE_CUMULATE</A> :: Update convection statistics.
160     C | | |
161     C | | |<A HREF=vdb/names/LV.htm target=codeBrowserWindow>PACKAGES_INIT_VARIABLES</A> :: Does initialisation of time evolving
162     C | | | | :: package data.
163     C | | | |
164     C | | | |<A HREF=vdb/names/LW.htm target=codeBrowserWindow>GMREDI_INIT</A> :: GM package. ( see pkg/gmredi )
165     C | | | |<A HREF=vdb/names/LX.htm target=codeBrowserWindow>KPP_INIT</A> :: KPP package. ( see pkg/kpp )
166     C | | | |<A HREF=vdb/names/25X.htm target=codeBrowserWindow>KPP_OPEN_DIAGS</A>
167     C | | | |<A HREF=vdb/names/LY.htm target=codeBrowserWindow>OBCS_INIT_VARIABLES</A> :: Open bndy. package. ( see pkg/obcs )
168     C | | | |<A HREF=vdb/names/LZ.htm target=codeBrowserWindow>AIM_INIT</A> :: Interm. atmos package. ( see pkg/aim )
169     C | | | |<A HREF=vdb/names/M0.htm target=codeBrowserWindow>CTRL_MAP_INI</A> :: Control vector package.( see pkg/ctrl )
170     C | | | |<A HREF=vdb/names/M1.htm target=codeBrowserWindow>COST_INIT</A> :: Cost function package. ( see pkg/cost )
171     C | | | |<A HREF=vdb/names/M2.htm target=codeBrowserWindow>ECCO_INIT</A> :: ECCO support package. ( see pkg/ecco )
172     C | | | |<A HREF=vdb/names/M3.htm target=codeBrowserWindow>INI_FORCING</A> :: Set model initial forcing fields.
173     C | | | | :: Either set in-line or from file as shown.
174     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(zonalWindFile)
175     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(meridWindFile)
176     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(surfQFile)
177     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(EmPmRfile)
178     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(thetaClimFile)
179     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(saltClimFile)
180     C | | | |<A HREF=vdb/names/22E.htm target=codeBrowserWindow>READ_FLD_XY_RS</A>(surfQswFile)
181     C | | |
182     C | | |<A HREF=vdb/names/M4.htm target=codeBrowserWindow>CALC_SURF_DR</A> :: Calculate the new surface level thickness.
183     C | | |<A HREF=vdb/names/M5.htm target=codeBrowserWindow>UPDATE_SURF_DR</A> :: Update the surface-level thickness fraction.
184     C | | |<A HREF=vdb/names/M6.htm target=codeBrowserWindow>UPDATE_CG2D</A> :: Update 2d conjugate grad. for Free-Surf.
185     C | | |<A HREF=vdb/names/M7.htm target=codeBrowserWindow>STATE_SUMMARY</A> :: Summarize model prognostic variables.
186     C | | |<A HREF=vdb/names/M8.htm target=codeBrowserWindow>TIMEAVE_STATVARS</A> :: Time averaging package ( see pkg/timeave ).
187     C | |
188     C | |<A HREF=vdb/names/M9.htm target=codeBrowserWindow>WRITE_STATE</A> :: Controlling routine for IO to dump model state.
189     C | | |<A HREF=vdb/names/MA.htm target=codeBrowserWindow>WRITE_REC_XYZ_RL</A> :: Single file I/O
190     C | | |<A HREF=vdb/names/MB.htm target=codeBrowserWindow>WRITE_FLD_XYZ_RL</A> :: Multi-file I/O
191     C | |
192     C | |<A HREF=vdb/names/MC.htm target=codeBrowserWindow>MONITOR</A> :: Monitor state ( see pkg/monitor )
193     C | |<A HREF=vdb/names/MD.htm target=codeBrowserWindow>CTRL_MAP_FORCING</A> :: Control vector support package. ( see pkg/ctrl )
194     C====|>|
195     C====|>| ****************************
196     C====|>| BEGIN MAIN TIMESTEPPING LOOP
197     C====|>| ****************************
198     C====|>|
199     C/\ | |<A HREF=vdb/names/ME.htm target=codeBrowserWindow>FORWARD_STEP</A> :: Step forward a time-step ( AT LAST !!! )
200     C/\ | | |
201     C/\ | | |<A HREF=vdb/names/MF.htm target=codeBrowserWindow>DUMMY_IN_STEPPING</A> :: autodiff package ( pkg/autoduff ).
202     C/\ | | |<A HREF=vdb/names/LQ.htm target=codeBrowserWindow>CALC_EXACT_ETA</A> :: Change SSH to flow divergence.
203     C/\ | | |<A HREF=vdb/names/M4.htm target=codeBrowserWindow>CALC_SURF_DR</A> :: Calculate the new surface level thickness.
204     C/\ | | |<A HREF=vdb/names/MI.htm target=codeBrowserWindow>EXF_GETFORCING</A> :: External forcing package. ( pkg/exf )
205     C/\ | | |<A HREF=vdb/names/MJ.htm target=codeBrowserWindow>EXTERNAL_FIELDS_LOAD</A> :: Control loading time dep. external data.
206     C/\ | | | | :: Simple interpolcation between end-points
207     C/\ | | | | :: for forcing datasets.
208     C/\ | | | |
209     C/\ | | | |-EXCH :: Sync forcing. in overlap regions.
210     C/\ | | |
211     C/\ | | |<A HREF=vdb/names/ML.htm target=codeBrowserWindow>THERMODYNAMICS</A> :: theta, salt + tracer equations driver.
212     C/\ | | | |
213     C/\ | | | |<A HREF=vdb/names/MM.htm target=codeBrowserWindow>INTEGRATE_FOR_W</A> :: Integrate for vertical velocity.
214     C/\ | | | |<A HREF=vdb/names/MN.htm target=codeBrowserWindow>OBCS_APPLY_W</A> :: Open bndy. package ( see pkg/obcs ).
215     C/\ | | | |<A HREF=vdb/names/LN.htm target=codeBrowserWindow>FIND_RHO</A> :: Calculates [rho(S,T,z)-Rhonil] of a slice
216     C/\ | | | |<A HREF=vdb/names/MP.htm target=codeBrowserWindow>GRAD_SIGMA</A> :: Calculate isoneutral gradients
217     C/\ | | | |<A HREF=vdb/names/MQ.htm target=codeBrowserWindow>CALC_IVDC</A> :: Set Implicit Vertical Diffusivity for Convection
218     C/\ | | | |
219     C/\ | | | |<A HREF=vdb/names/MR.htm target=codeBrowserWindow>OBCS_CALC</A> :: Open bndy. package ( see pkg/obcs ).
220     C/\ | | | |<A HREF=vdb/names/MS.htm target=codeBrowserWindow>EXTERNAL_FORCING_SURF</A>:: Accumulates appropriately dimensioned
221     C/\ | | | | :: forcing terms.
222     C/\ | | | |
223     C/\ | | | |<A HREF=vdb/names/MT.htm target=codeBrowserWindow>GMREDI_CALC_TENSOR</A> :: GM package ( see pkg/gmredi ).
224     C/\ | | | |<A HREF=vdb/names/MU.htm target=codeBrowserWindow>GMREDI_CALC_TENSOR_DUMMY</A> :: GM package ( see pkg/gmredi ).
225     C/\ | | | |<A HREF=vdb/names/MV.htm target=codeBrowserWindow>KPP_CALC</A> :: KPP package ( see pkg/kpp ).
226     C/\ | | | |<A HREF=vdb/names/MW.htm target=codeBrowserWindow>KPP_CALC_DUMMY</A> :: KPP package ( see pkg/kpp ).
227     C/\ | | | |<A HREF=vdb/names/MX.htm target=codeBrowserWindow>AIM_DO_ATMOS_PHYSICS</A> :: Intermed. atmos package ( see pkg/aim ).
228     C/\ | | | |<A HREF=vdb/names/MY.htm target=codeBrowserWindow>GAD_ADVECTION</A> :: Generalised advection driver (multi-dim
229     C/\ | | | | advection case) (see pkg/gad).
230     C/\ | | | |<A HREF=vdb/names/MZ.htm target=codeBrowserWindow>CALC_COMMON_FACTORS</A> :: Calculate common data (such as volume flux)
231     C/\ | | | |<A HREF=vdb/names/N0.htm target=codeBrowserWindow>CALC_DIFFUSIVITY</A> :: Calculate net vertical diffusivity
232     C/\ | | | | |
233     C/\ | | | | |<A HREF=vdb/names/N1.htm target=codeBrowserWindow>GMREDI_CALC_DIFF</A> :: GM package ( see pkg/gmredi ).
234     C/\ | | | | |<A HREF=vdb/names/N2.htm target=codeBrowserWindow>KPP_CALC_DIFF</A> :: KPP package ( see pkg/kpp ).
235     C/\ | | | |
236     C/\ | | | |<A HREF=vdb/names/N3.htm target=codeBrowserWindow>CALC_GT</A> :: Calculate the temperature tendency terms
237     C/\ | | | | |
238     C/\ | | | | |<A HREF=vdb/names/N4.htm target=codeBrowserWindow>GAD_CALC_RHS</A> :: Generalised advection package
239     C/\ | | | | | :: ( see pkg/gad )
240     C/\ | | | | |<A HREF=vdb/names/N5.htm target=codeBrowserWindow>EXTERNAL_FORCING_T</A> :: Problem specific forcing for temperature.
241     C/\ | | | | |<A HREF=vdb/names/N6.htm target=codeBrowserWindow>ADAMS_BASHFORTH2</A> :: Extrapolate tendencies forward in time.
242     C/\ | | | | |<A HREF=vdb/names/N7.htm target=codeBrowserWindow>FREESURF_RESCALE_G</A> :: Re-scale Gt for free-surface height.
243     C/\ | | | |
244     C/\ | | | |<A HREF=vdb/names/N8.htm target=codeBrowserWindow>TIMESTEP_TRACER</A> :: Step tracer field forward in time
245     C/\ | | | |
246     C/\ | | | |<A HREF=vdb/names/N9.htm target=codeBrowserWindow>CALC_GS</A> :: Calculate the salinity tendency terms
247     C/\ | | | | |
248     C/\ | | | | |<A HREF=vdb/names/N4.htm target=codeBrowserWindow>GAD_CALC_RHS</A> :: Generalised advection package
249     C/\ | | | | | :: ( see pkg/gad )
250     C/\ | | | | |<A HREF=vdb/names/NB.htm target=codeBrowserWindow>EXTERNAL_FORCING_S</A> :: Problem specific forcing for salt.
251     C/\ | | | | |<A HREF=vdb/names/N6.htm target=codeBrowserWindow>ADAMS_BASHFORTH2</A> :: Extrapolate tendencies forward in time.
252     C/\ | | | | |<A HREF=vdb/names/N7.htm target=codeBrowserWindow>FREESURF_RESCALE_G</A> :: Re-scale Gs for free-surface height.
253     C/\ | | | |
254     C/\ | | | |<A HREF=vdb/names/N8.htm target=codeBrowserWindow>TIMESTEP_TRACER</A> :: Step tracer field forward in time
255     C/\ | | | |
256     C/\ | | | |<A HREF=vdb/names/NF.htm target=codeBrowserWindow>CALC_GTR1</A> :: Calculate other tracer(s) tendency terms
257     C/\ | | | | |
258     C/\ | | | | |<A HREF=vdb/names/N4.htm target=codeBrowserWindow>GAD_CALC_RHS</A> :: Generalised advection package
259     C/\ | | | | | :: ( see pkg/gad )
260     C/\ | | | | |<A HREF=vdb/names/NH.htm target=codeBrowserWindow>EXTERNAL_FORCING_TR</A>:: Problem specific forcing for tracer.
261     C/\ | | | | |<A HREF=vdb/names/N6.htm target=codeBrowserWindow>ADAMS_BASHFORTH2</A> :: Extrapolate tendencies forward in time.
262     C/\ | | | | |<A HREF=vdb/names/N7.htm target=codeBrowserWindow>FREESURF_RESCALE_G</A> :: Re-scale Gs for free-surface height.
263     C/\ | | | |
264     C/\ | | | |<A HREF=vdb/names/N8.htm target=codeBrowserWindow>TIMESTEP_TRACER</A> :: Step tracer field forward in time
265     C/\ | | | |<A HREF=vdb/names/NL.htm target=codeBrowserWindow>OBCS_APPLY_TS</A> :: Open bndy. package (see pkg/obcs ).
266     C/\ | | | |<A HREF=vdb/names/NM.htm target=codeBrowserWindow>FREEZE</A> :: Limit range of temperature.
267     C/\ | | | |
268     C/\ | | | |<A HREF=vdb/names/NN.htm target=codeBrowserWindow>IMPLDIFF</A> :: Solve vertical implicit diffusion equation.
269     C/\ | | | |<A HREF=vdb/names/NL.htm target=codeBrowserWindow>OBCS_APPLY_TS</A> :: Open bndy. package (see pkg/obcs ).
270     C/\ | | | |
271     C/\ | | | |<A HREF=vdb/names/NP.htm target=codeBrowserWindow>AIM_AIM2DYN_EXCHANGES</A> :: Inetermed. atmos (see pkg/aim).
272     C/\ | | | |-EXCH :: Update overlaps
273     C/\ | | |
274     C/\ | | |<A HREF=vdb/names/NR.htm target=codeBrowserWindow>DYNAMICS</A> :: Momentum equations driver.
275     C/\ | | | |
276     C/\ | | | |<A HREF=vdb/names/LG.htm target=codeBrowserWindow>CALC_GRAD_PHI_SURF</A> :: Calculate the gradient of the surface
277     C/\ | | | | Potential anomaly.
278     C/\ | | | |<A HREF=vdb/names/NT.htm target=codeBrowserWindow>CALC_VISCOSITY</A> :: Calculate net vertical viscosity
279     C/\ | | | | |<A HREF=vdb/names/NU.htm target=codeBrowserWindow>KPP_CALC_VISC</A> :: KPP package ( see pkg/kpp ).
280     C/\ | | | |
281     C/\ | | | |<A HREF=vdb/names/NV.htm target=codeBrowserWindow>CALC_PHI_HYD</A> :: Integrate the hydrostatic relation.
282     C/\ | | | |<A HREF=vdb/names/NW.htm target=codeBrowserWindow>MOM_FLUXFORM</A> :: Flux form mom eqn. package ( see
283     C/\ | | | | pkg/mom_fluxform ).
284     C/\ | | | |<A HREF=vdb/names/NX.htm target=codeBrowserWindow>MOM_VECINV</A> :: Vector invariant form mom eqn. package ( see
285     C/\ | | | | pkg/mom_vecinv ).
286     C/\ | | | |<A HREF=vdb/names/NY.htm target=codeBrowserWindow>TIMESTEP</A> :: Step momentum fields forward in time
287     C/\ | | | |<A HREF=vdb/names/NZ.htm target=codeBrowserWindow>OBCS_APPLY_UV</A> :: Open bndy. package (see pkg/obcs ).
288     C/\ | | | |
289     C/\ | | | |<A HREF=vdb/names/NN.htm target=codeBrowserWindow>IMPLDIFF</A> :: Solve vertical implicit diffusion equation.
290     C/\ | | | |<A HREF=vdb/names/NZ.htm target=codeBrowserWindow>OBCS_APPLY_UV</A> :: Open bndy. package (see pkg/obcs ).
291     C/\ | | | |
292     C/\ | | | |<A HREF=vdb/names/O2.htm target=codeBrowserWindow>TIMEAVE_CUMUL_1T</A> :: Time averaging package ( see pkg/timeave ).
293     C/\ | | | |-TIMEAVE_CUMUATE :: Time averaging package ( see pkg/timeave ).
294     C/\ | | | |<A HREF=vdb/names/O4.htm target=codeBrowserWindow>DEBUG_STATS_RL</A> :: Quick debug package ( see pkg/debug ).
295     C/\ | | |
296     C/\ | | |<A HREF=vdb/names/O5.htm target=codeBrowserWindow>CALC_GW</A> :: vert. momentum tendency terms ( NH, QH only ).
297     C/\ | | |
298     C/\ | | |<A HREF=vdb/names/M5.htm target=codeBrowserWindow>UPDATE_SURF_DR</A> :: Update the surface-level thickness fraction.
299     C/\ | | |
300     C/\ | | |<A HREF=vdb/names/M6.htm target=codeBrowserWindow>UPDATE_CG2D</A> :: Update 2d conjugate grad. for Free-Surf.
301     C/\ | | |
302     C/\ | | |<A HREF=vdb/names/O8.htm target=codeBrowserWindow>SOLVE_FOR_PRESSURE</A> :: Find surface pressure.
303     C/\ | | | |<A HREF=vdb/names/O9.htm target=codeBrowserWindow>CALC_DIV_GHAT</A> :: Form the RHS of the surface pressure eqn.
304     C/\ | | | |<A HREF=vdb/names/OA.htm target=codeBrowserWindow>CG2D</A> :: Two-dim pre-con. conjugate-gradient.
305     C/\ | | | |<A HREF=vdb/names/OB.htm target=codeBrowserWindow>CG3D</A> :: Three-dim pre-con. conjugate-gradient solver.
306     C/\ | | |
307     C/\ | | |<A HREF=vdb/names/LF.htm target=codeBrowserWindow>THE_CORRECTION_STEP</A> :: Step forward to next time step.
308     C/\ | | | |
309     C/\ | | | |<A HREF=vdb/names/LG.htm target=codeBrowserWindow>CALC_GRAD_PHI_SURF</A> :: Return DDx and DDy of surface pressure
310     C/\ | | | |<A HREF=vdb/names/LH.htm target=codeBrowserWindow>CORRECTION_STEP</A> :: Pressure correction to momentum
311     C/\ | | | |<A HREF=vdb/names/LI.htm target=codeBrowserWindow>CYCLE_TRACER</A> :: Move tracers forward in time.
312     C/\ | | | |-OBCS_APPLY :: Open bndy package. see pkg/obcs
313     C/\ | | | |-SHAP_FILT_APPLY :: Shapiro filter package. see pkg/shap_filt
314     C/\ | | | |-ZONAL_FILT_APPLY :: FFT filter package. see pkg/zonal_filt
315     C/\ | | | |<A HREF=vdb/names/LM.htm target=codeBrowserWindow>CONVECTIVE_ADJUSTMENT</A> :: Control static instability mixing.
316     C/\ | | | | |<A HREF=vdb/names/LN.htm target=codeBrowserWindow>FIND_RHO</A> :: Find adjacent densities.
317     C/\ | | | | |<A HREF=vdb/names/LO.htm target=codeBrowserWindow>CONVECT</A> :: Mix static instability.
318     C/\ | | | | |<A HREF=vdb/names/LP.htm target=codeBrowserWindow>TIMEAVE_CUMULATE</A> :: Update convection statistics.
319     C/\ | | | |
320     C/\ | | | |<A HREF=vdb/names/LQ.htm target=codeBrowserWindow>CALC_EXACT_ETA</A> :: Change SSH to flow divergence.
321     C/\ | | |
322     C/\ | | |<A HREF=vdb/names/OO.htm target=codeBrowserWindow>DO_FIELDS_BLOCKING_EXCHANGES</A> :: Sync up overlap regions.
323     C/\ | | | |-EXCH
324     C/\ | | |
325     C/\ | | |<A HREF=vdb/names/OP.htm target=codeBrowserWindow>FLT_MAIN</A> :: Float package ( pkg/flt ).
326     C/\ | | |
327     C/\ | | |<A HREF=vdb/names/MC.htm target=codeBrowserWindow>MONITOR</A> :: Monitor package ( pkg/monitor ).
328     C/\ | | |
329     C/\ | | |<A HREF=vdb/names/OR.htm target=codeBrowserWindow>DO_THE_MODEL_IO</A> :: Standard diagnostic I/O.
330     C/\ | | | |<A HREF=vdb/names/M9.htm target=codeBrowserWindow>WRITE_STATE</A> :: Core state I/O
331     C/\ | | | |<A HREF=vdb/names/OT.htm target=codeBrowserWindow>TIMEAVE_STATV_WRITE</A> :: Time averages. see pkg/timeave
332     C/\ | | | |<A HREF=vdb/names/OU.htm target=codeBrowserWindow>AIM_WRITE_DIAGS</A> :: Intermed. atmos diags. see pkg/aim
333     C/\ | | | |<A HREF=vdb/names/OV.htm target=codeBrowserWindow>GMREDI_DIAGS</A> :: GM diags. see pkg/gmredi
334     C/\ | | | |<A HREF=vdb/names/OW.htm target=codeBrowserWindow>KPP_DO_DIAGS</A> :: KPP diags. see pkg/kpp
335     C/\ | | |
336     C/\ | | |<A HREF=vdb/names/OX.htm target=codeBrowserWindow>WRITE_CHECKPOINT</A> :: Do I/O for restart files.
337     C/\ | |
338     C/\ | |<A HREF=vdb/names/OY.htm target=codeBrowserWindow>COST_TILE</A> :: Cost function package. ( see pkg/cost )
339     C<===|=|
340     C<===|=| **************************
341     C<===|=| END MAIN TIMESTEPPING LOOP
342     C<===|=| **************************
343     C<===|=|
344     C | |<A HREF=vdb/names/OZ.htm target=codeBrowserWindow>COST_FINAL</A> :: Cost function package. ( see pkg/cost )
345     C |
346     C |<A HREF=vdb/names/OX.htm target=codeBrowserWindow>WRITE_CHECKPOINT</A> :: Final state storage, for restart.
347     C |
348     C |<A HREF=vdb/names/P1.htm target=codeBrowserWindow>TIMER_PRINTALL</A> :: Computational timing summary
349     C |
350     C |<A HREF=vdb/names/P2.htm target=codeBrowserWindow>COMM_STATS</A> :: Summarise inter-proc and inter-thread communication
351     C :: events.
352     </PRE>
353     </BODY>
354     </HTML>
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