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adcroft |
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/* |
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** This program and library is free software; you can redistribute it and/or |
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** modify it under the terms of the GNU (Library) General Public License |
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** as published by the Free Software Foundation; either version 2 |
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** of the License, or any later version. |
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** |
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** This program is distributed in the hope that it will be useful, |
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** but WITHOUT ANY WARRANTY; without even the implied warranty of |
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** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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** GNU (Library) General Public License for more details. |
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** |
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** You should have received a copy of the GNU (Library) General Public License |
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** along with this program; if not, write to the Free Software |
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** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. |
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**----------------------------------------------------------------- |
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** |
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** Virtual Array Code. |
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** 11/2001 jmruiz - The intention of this routines is storing and reading |
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** elemnts of arrays of long numbers avoiding the |
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** allocation in memory of the total array. In other words, |
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** if we need to read only 10 elements of the array, we |
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** will must try to make the minimal I/O memory and disk |
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** operations. |
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** |
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** To do that, the data is stored in aligned pages in disk |
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** Also, a simple cache system is used to speed I/O file |
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** operations. |
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** |
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** The virtual array is extensible. In other words, you can |
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** add elements whenever you want |
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** |
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** Main routines: |
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** |
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** ARRAY *ARRAY_Create(FILE *fp) |
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** Creates a virtual array. Returns the handle of the array |
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** |
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** ARRAY *ARRAY_Open(FILE *fp, unsigned long root_page) |
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** Opens an existent Virtual Array. root_page is de value returned by |
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** Array_Close. Returns de handle of the array. |
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** |
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** unsigned long ARRAY_Close(ARRAY *arr) |
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** Closes and frees memory. arr is the value returned by ARRAY_Create or |
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** ARRAY_Open. Returns the root page of the array. This value must be |
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** |
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** int ARRAY_Put(ARRAY *arr, int index, unsigned long value) |
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** Writes the array element arr[index]=value to the virtual array |
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** |
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** unsigned long ARRAY_Get(ARRAY *arr, int index) |
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** Reads the array element index. Returns de value arr[index] |
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** |
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*/ |
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#include <stdio.h> |
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#include <stdlib.h> |
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#include <string.h> |
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/* |
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#define STANDALONE |
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#define DEBUG |
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*/ |
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#ifdef STANDALONE |
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/* Rourtines to make long integers portable */ |
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unsigned long PACKLONG(unsigned long num) |
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{ |
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unsigned long _i = 0L; |
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unsigned char *_s; |
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if (num) |
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{ |
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_s = (unsigned char *) &_i; |
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_s[0] = (unsigned char) ((num >> 24) & 0xFF); |
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_s[1] = (unsigned char) ((num >> 16) & 0xFF); |
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_s[2] = (unsigned char) ((num >> 8) & 0xFF); |
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_s[3] = (unsigned char) (num & 0xFF); |
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return _i; |
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} |
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return num; |
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} |
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unsigned long UNPACKLONG(unsigned long num) |
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{ |
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unsigned char *_s = (unsigned char *) # |
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return (_s[0] << 24) + (_s[1] << 16) + (_s[2] << 8) + _s[3]; |
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} |
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static int num = 0; |
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char *emalloc(unsigned int size) |
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{ |
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num++; |
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return malloc(size); |
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} |
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void efree(void *p) |
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{ |
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num--; |
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free(p); |
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} |
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#else |
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#include "mem.h" |
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unsigned long PACKLONG(unsigned long num); |
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unsigned long UNPACKLONG(unsigned long num); |
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unsigned char *compress3(int num, unsigned char *buffer); |
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int uncompress2(unsigned char **buffer); |
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#endif /* STANDALONE */ |
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#include "array.h" |
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/* A ARRAY page size */ |
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#define ARRAY_PageSize 4096 |
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#define SizeInt32 4 |
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/* Round to ARRAY_PageSize */ |
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#define ARRAY_RoundPageSize(n) (((n) + ARRAY_PageSize - 1) & (~(ARRAY_PageSize - 1))) |
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#define ARRAY_PageHeaderSize (1 * SizeInt32) |
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#define ARRAY_PageData(pg) ((pg)->data + ARRAY_PageHeaderSize) |
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#define ARRAY_Data(pg,i) (ARRAY_PageData((pg)) + (i) * SizeInt32) |
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#define ARRAY_SetNextPage(pg,num) ( *(int *)((pg)->data + 0 * SizeInt32) = PACKLONG(num)) |
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#define ARRAY_GetNextPage(pg,num) ( (num) = UNPACKLONG(*(int *)((pg)->data + 0 * SizeInt32))) |
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int ARRAY_WritePageToDisk(FILE *fp, ARRAY_Page *pg) |
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{ |
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ARRAY_SetNextPage(pg,pg->next); |
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fseek(fp,pg->page_number * ARRAY_PageSize,SEEK_SET); |
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return fwrite(pg->data,ARRAY_PageSize,1,fp); |
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} |
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int ARRAY_WritePage(ARRAY *b, ARRAY_Page *pg) |
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{ |
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int hash = pg->page_number % ARRAY_CACHE_SIZE; |
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ARRAY_Page *tmp; |
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pg->modified =1; |
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if((tmp = b->cache[hash])) |
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{ |
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while(tmp) |
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{ |
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if(tmp->page_number == pg->page_number) |
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{ |
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return 0; |
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} |
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tmp = tmp->next_cache; |
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} |
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} |
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pg->next_cache = b->cache[hash]; |
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b->cache[hash] = pg; |
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return 0; |
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} |
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int ARRAY_FlushCache(ARRAY *b) |
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{ |
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int i; |
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ARRAY_Page *tmp, *next; |
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for(i = 0; i < ARRAY_CACHE_SIZE; i++) |
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{ |
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if((tmp = b->cache[i])) |
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{ |
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while(tmp) |
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{ |
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#ifdef DEBUG |
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if(tmp->in_use) |
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{ |
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printf("DEBUG Error in FlushCache: Page in use\n"); |
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exit(0); |
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} |
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#endif |
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next = tmp->next_cache; |
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if(tmp->modified) |
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{ |
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ARRAY_WritePageToDisk(b->fp, tmp); |
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tmp->modified = 0; |
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} |
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if(tmp != b->cache[i]) |
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efree(tmp); |
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tmp = next; |
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} |
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b->cache[i]->next_cache = NULL; |
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} |
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} |
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return 0; |
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} |
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int ARRAY_CleanCache(ARRAY *b) |
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{ |
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int i; |
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ARRAY_Page *tmp,*next; |
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for(i = 0; i < ARRAY_CACHE_SIZE; i++) |
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{ |
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if((tmp = b->cache[i])) |
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{ |
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while(tmp) |
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{ |
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next = tmp->next_cache; |
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efree(tmp); |
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tmp = next; |
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} |
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b->cache[i] = NULL; |
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} |
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} |
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return 0; |
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} |
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ARRAY_Page *ARRAY_ReadPageFromDisk(FILE *fp, unsigned long page_number) |
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{ |
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ARRAY_Page *pg = (ARRAY_Page *)emalloc(sizeof(ARRAY_Page) + ARRAY_PageSize); |
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fseek(fp,page_number * ARRAY_PageSize,SEEK_SET); |
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fread(pg->data,ARRAY_PageSize, 1, fp); |
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ARRAY_GetNextPage(pg,pg->next); |
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pg->page_number = page_number; |
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pg->modified = 0; |
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return pg; |
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} |
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ARRAY_Page *ARRAY_ReadPage(ARRAY *b, unsigned long page_number) |
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{ |
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int hash = page_number % ARRAY_CACHE_SIZE; |
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ARRAY_Page *tmp; |
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if((tmp = b->cache[hash])) |
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{ |
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while(tmp) |
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{ |
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if(tmp->page_number == page_number) |
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{ |
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return tmp; |
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} |
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tmp = tmp->next_cache; |
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} |
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} |
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tmp = ARRAY_ReadPageFromDisk(b->fp, page_number); |
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tmp->modified = 0; |
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tmp->in_use = 1; |
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tmp->next_cache = b->cache[hash]; |
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b->cache[hash] = tmp; |
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return tmp; |
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} |
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ARRAY_Page *ARRAY_NewPage(ARRAY *b) |
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{ |
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ARRAY_Page *pg; |
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long offset; |
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FILE *fp = b->fp; |
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int hash; |
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int size = ARRAY_PageSize; |
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/* Get file pointer */ |
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if(fseek(fp,0,SEEK_END) !=0) |
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{ |
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printf("mal\n"); |
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} |
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offset = ftell(fp); |
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/* Round up file pointer */ |
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offset = ARRAY_RoundPageSize(offset); |
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/* Set new file pointer - data will be aligned */ |
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if(fseek(fp,offset, SEEK_SET)!=0 || offset != ftell(fp)) |
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{ |
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printf("mal\n"); |
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} |
280 |
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281 |
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pg = (ARRAY_Page *)emalloc(sizeof(ARRAY_Page) + size); |
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memset(pg,0,sizeof(ARRAY_Page) + size); |
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/* Reserve space in file */ |
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if(fwrite(pg->data,1,size,fp)!=size || ((long)size + offset) != ftell(fp)) |
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{ |
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printf("mal\n"); |
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} |
288 |
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289 |
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pg->next = 0; |
290 |
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291 |
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pg->page_number = offset/ARRAY_PageSize; |
292 |
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293 |
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/* add to cache */ |
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pg->modified = 1; |
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pg->in_use = 1; |
296 |
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hash = pg->page_number % ARRAY_CACHE_SIZE; |
297 |
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pg->next_cache = b->cache[hash]; |
298 |
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b->cache[hash] = pg; |
299 |
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return pg; |
300 |
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} |
301 |
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302 |
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void ARRAY_FreePage(ARRAY *b, ARRAY_Page *pg) |
303 |
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{ |
304 |
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int hash = pg->page_number % ARRAY_CACHE_SIZE; |
305 |
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ARRAY_Page *tmp; |
306 |
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307 |
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tmp = b->cache[hash]; |
308 |
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309 |
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#ifdef DEBUG |
310 |
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if(!(tmp = b->cache[hash])) |
311 |
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{ |
312 |
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/* This should never happen!!!! */ |
313 |
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printf("Error in FreePage\n"); |
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exit(0); |
315 |
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} |
316 |
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#endif |
317 |
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318 |
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while(tmp) |
319 |
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{ |
320 |
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if (tmp->page_number != pg->page_number) |
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tmp = tmp->next_cache; |
322 |
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else |
323 |
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{ |
324 |
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tmp->in_use = 0; |
325 |
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break; |
326 |
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} |
327 |
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} |
328 |
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} |
329 |
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330 |
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ARRAY *ARRAY_New(FILE *fp, unsigned int size) |
331 |
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{ |
332 |
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ARRAY *b; |
333 |
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int i; |
334 |
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b = (ARRAY *) emalloc(sizeof(ARRAY)); |
335 |
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b->page_size = size; |
336 |
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b->fp = fp; |
337 |
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for(i = 0; i < ARRAY_CACHE_SIZE; i++) |
338 |
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b->cache[i] = NULL; |
339 |
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340 |
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return b; |
341 |
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} |
342 |
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343 |
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ARRAY *ARRAY_Create(FILE *fp) |
344 |
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{ |
345 |
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ARRAY *b; |
346 |
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ARRAY_Page *root; |
347 |
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int size = ARRAY_PageSize; |
348 |
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349 |
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b = ARRAY_New(fp , size); |
350 |
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root = ARRAY_NewPage(b); |
351 |
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352 |
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b->root_page = root->page_number; |
353 |
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354 |
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ARRAY_WritePage(b, root); |
355 |
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ARRAY_FreePage(b, root); |
356 |
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357 |
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return b; |
358 |
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} |
359 |
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360 |
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361 |
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ARRAY *ARRAY_Open(FILE *fp, unsigned long root_page) |
362 |
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{ |
363 |
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ARRAY *b; |
364 |
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int size = ARRAY_PageSize; |
365 |
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366 |
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b = ARRAY_New(fp , size); |
367 |
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368 |
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b->root_page = root_page; |
369 |
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370 |
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return b; |
371 |
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} |
372 |
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373 |
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unsigned long ARRAY_Close(ARRAY *bt) |
374 |
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{ |
375 |
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unsigned long root_page = bt->root_page; |
376 |
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ARRAY_FlushCache(bt); |
377 |
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ARRAY_CleanCache(bt); |
378 |
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efree(bt); |
379 |
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return root_page; |
380 |
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} |
381 |
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382 |
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383 |
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int ARRAY_Put(ARRAY *b, int index, unsigned long value) |
384 |
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{ |
385 |
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unsigned long next_page; |
386 |
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ARRAY_Page *root_page, *tmp = NULL, *prev; |
387 |
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int i, hash, page_reads, page_index; |
388 |
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389 |
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page_reads = index / ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
390 |
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hash = page_reads % ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
391 |
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page_reads /= ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
392 |
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page_index = index % ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
393 |
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394 |
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root_page = ARRAY_ReadPage(b, b->root_page); |
395 |
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next_page = UNPACKLONG(*(unsigned long *)ARRAY_Data(root_page, hash)); |
396 |
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397 |
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prev = NULL; |
398 |
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for(i = 0; i <= page_reads; i++) |
399 |
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{ |
400 |
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if(!next_page) |
401 |
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{ |
402 |
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tmp = ARRAY_NewPage(b); |
403 |
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ARRAY_WritePage(b,tmp); |
404 |
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if(!i) |
405 |
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{ |
406 |
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*(unsigned long *)ARRAY_Data(root_page,hash) = PACKLONG(tmp->page_number); |
407 |
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ARRAY_WritePage(b,root_page); |
408 |
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} |
409 |
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else |
410 |
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{ |
411 |
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prev->next = tmp->page_number; |
412 |
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ARRAY_WritePage(b,prev); |
413 |
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} |
414 |
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} |
415 |
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else |
416 |
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{ |
417 |
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tmp = ARRAY_ReadPage(b, next_page); |
418 |
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} |
419 |
|
|
if(prev) |
420 |
|
|
ARRAY_FreePage(b,prev); |
421 |
|
|
prev = tmp; |
422 |
|
|
next_page = tmp->next; |
423 |
|
|
} |
424 |
|
|
*(unsigned long *)ARRAY_Data(tmp,page_index) = PACKLONG(value); |
425 |
|
|
ARRAY_WritePage(b,tmp); |
426 |
|
|
ARRAY_FreePage(b,tmp); |
427 |
|
|
ARRAY_FreePage(b,root_page); |
428 |
|
|
|
429 |
|
|
return 0; |
430 |
|
|
} |
431 |
|
|
|
432 |
|
|
|
433 |
|
|
unsigned long ARRAY_Get(ARRAY *b, int index) |
434 |
|
|
{ |
435 |
|
|
unsigned long next_page, value; |
436 |
|
|
ARRAY_Page *root_page, *tmp; |
437 |
|
|
int i, hash, page_reads, page_index; |
438 |
|
|
|
439 |
|
|
page_reads = index / ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
440 |
|
|
hash = page_reads % ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
441 |
|
|
page_reads /= ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
442 |
|
|
page_index = index % ((ARRAY_PageSize - ARRAY_PageHeaderSize) / SizeInt32); |
443 |
|
|
|
444 |
|
|
root_page = ARRAY_ReadPage(b, b->root_page); |
445 |
|
|
next_page = UNPACKLONG(*(unsigned long *)ARRAY_Data(root_page, hash)); |
446 |
|
|
|
447 |
|
|
tmp = NULL; |
448 |
|
|
for(i = 0; i <= page_reads; i++) |
449 |
|
|
{ |
450 |
|
|
if(tmp) |
451 |
|
|
ARRAY_FreePage(b, tmp); |
452 |
|
|
if(!next_page) |
453 |
|
|
{ |
454 |
|
|
ARRAY_FreePage(b,root_page); |
455 |
|
|
return 0L; |
456 |
|
|
} |
457 |
|
|
else |
458 |
|
|
{ |
459 |
|
|
tmp = ARRAY_ReadPage(b, next_page); |
460 |
|
|
} |
461 |
|
|
next_page = tmp->next; |
462 |
|
|
} |
463 |
|
|
value = UNPACKLONG(*(unsigned long *)ARRAY_Data(tmp,page_index)); |
464 |
|
|
ARRAY_FreePage(b,tmp); |
465 |
|
|
ARRAY_FreePage(b,root_page); |
466 |
|
|
|
467 |
|
|
return value; |
468 |
|
|
} |
469 |
|
|
|
470 |
|
|
|
471 |
|
|
|
472 |
|
|
#ifdef DEBUG |
473 |
|
|
|
474 |
|
|
#include <time.h> |
475 |
|
|
|
476 |
|
|
#define N_TEST 50000000 |
477 |
|
|
|
478 |
|
|
#define F_READ_BINARY "rb" |
479 |
|
|
#define F_WRITE_BINARY "wb" |
480 |
|
|
#define F_READWRITE_BINARY "rb+" |
481 |
|
|
|
482 |
|
|
#define F_READ_TEXT "r" |
483 |
|
|
#define F_WRITE_TEXT "w" |
484 |
|
|
#define F_READWRITE_TEXT "r+" |
485 |
|
|
|
486 |
|
|
int main() |
487 |
|
|
{ |
488 |
|
|
FILE *fp; |
489 |
|
|
ARRAY *bt; |
490 |
|
|
int i; |
491 |
|
|
static unsigned long nums[N_TEST]; |
492 |
|
|
unsigned long root_page; |
493 |
|
|
srand(time(NULL)); |
494 |
|
|
|
495 |
|
|
|
496 |
|
|
|
497 |
|
|
fp = fopen("kkkkk",F_WRITE_BINARY); |
498 |
|
|
fclose(fp); |
499 |
|
|
fp = fopen("kkkkk",F_READWRITE_BINARY); |
500 |
|
|
|
501 |
|
|
fwrite("aaa",1,3,fp); |
502 |
|
|
|
503 |
|
|
printf("\n\nIndexing\n\n"); |
504 |
|
|
|
505 |
|
|
bt = ARRAY_Create(fp); |
506 |
|
|
for(i=0;i<N_TEST;i++) |
507 |
|
|
{ |
508 |
|
|
nums[i] = rand(); |
509 |
|
|
// nums[i]=i; |
510 |
|
|
ARRAY_Put(bt,i,nums[i]); |
511 |
|
|
if(nums[i]!= ARRAY_Get(bt,i)) |
512 |
|
|
printf("\n\nmal %d\n\n",i); |
513 |
|
|
if(!(i%1000)) |
514 |
|
|
{ |
515 |
|
|
ARRAY_FlushCache(bt); |
516 |
|
|
printf("%d \r",i); |
517 |
|
|
} |
518 |
|
|
} |
519 |
|
|
|
520 |
|
|
root_page = ARRAY_Close(bt); |
521 |
|
|
fclose(fp); |
522 |
|
|
|
523 |
|
|
printf("\n\nUnfreed %d\n\n",num); |
524 |
|
|
printf("\n\nSearching\n\n"); |
525 |
|
|
|
526 |
|
|
fp = fopen("kkkkk",F_READ_BINARY); |
527 |
|
|
bt = ARRAY_Open(fp, root_page); |
528 |
|
|
|
529 |
|
|
for(i=0;i<N_TEST;i++) |
530 |
|
|
{ |
531 |
|
|
if(nums[i] != ARRAY_Get(bt,i)) |
532 |
|
|
printf("\n\nmal %d\n\n",i); |
533 |
|
|
if(!(i%1000)) |
534 |
|
|
printf("%d \r",i); |
535 |
|
|
} |
536 |
|
|
|
537 |
|
|
root_page = ARRAY_Close(bt); |
538 |
|
|
|
539 |
|
|
fclose(fp); |
540 |
|
|
printf("\n\nUnfreed %d\n\n",num); |
541 |
|
|
|
542 |
|
|
} |
543 |
|
|
|
544 |
|
|
#endif |