1 |
adcroft |
1.1 |
C |
2 |
|
|
C Invocation from WRAPPER level... |
3 |
jmc |
1.2 |
C |
4 |
adcroft |
1.1 |
C | |
5 |
|
|
C |-THE_MODEL_MAIN :: Primary driver for the MITgcm algorithm |
6 |
|
|
C | :: Called from WRAPPER level numerical |
7 |
jmc |
1.2 |
C | :: code invocation routine. On entry |
8 |
adcroft |
1.1 |
C | :: to THE_MODEL_MAIN separate thread and |
9 |
|
|
C | :: separate processes will have been established. |
10 |
|
|
C | :: Each thread and process will have a unique ID |
11 |
|
|
C | :: but as yet it will not be associated with a |
12 |
|
|
C | :: specific region in decomposed discrete space. |
13 |
|
|
C | |
14 |
jmc |
1.2 |
C |-INITIALISE_FIXED :: Set fixed model arrays such as topography, |
15 |
adcroft |
1.1 |
C | | :: grid, solver matrices etc.. |
16 |
jmc |
1.2 |
C | | |
17 |
adcroft |
1.1 |
C | |-INI_PARMS :: Routine to set kernel model parameters. |
18 |
jmc |
1.2 |
C | | :: Kernel parameters are read from file "data" |
19 |
|
|
C | | :: in directory in which code executes. |
20 |
|
|
C | | |
21 |
|
|
C | |-PACKAGES_BOOT :: Start up the optional package environment. |
22 |
|
|
C | | :: Runtime selection of active packages. |
23 |
jmc |
1.3 |
C | |-PACKAGES_READPARMS :: read each package input parameter file |
24 |
jmc |
1.2 |
C | | |- ${PKG}_READPARMS |
25 |
adcroft |
1.1 |
C | | |
26 |
jmc |
1.2 |
C | |-SET_PARMS :: Finalise model parameter setting (if fct of pkg usage) |
27 |
adcroft |
1.1 |
C | | |
28 |
jmc |
1.3 |
C | |-INI_MODEL_IO :: Initialise Input/Output setting |
29 |
|
|
C | | |-MNC_INIT :: Initialise MITgcm NetCDF interface (MNC)(see pkg/mnc) |
30 |
|
|
C | | |-MNC_CW_INIT :: Initialise MNC grid and variable types (see pkg/mnc) |
31 |
|
|
C | | |-MON_INIT :: Initialises monitor package ( see pkg/monitor ) |
32 |
|
|
C | | |
33 |
|
|
C | |-INI_GRID :: Control grid array (vert. and horiz.) initialisation. |
34 |
|
|
C | | | :: Grid arrays are held and described in GRID.h. |
35 |
|
|
C | | |-LOAD_GRID_SPACING :: Load grid spacing (vector) from files |
36 |
|
|
C | | |-INI_VERTICAL_GRID :: Set up vertical grid and coordinate |
37 |
|
|
C | | |-INI_CARTESIAN_GRID :: Cartesian horiz. grid initialisation |
38 |
|
|
C | | | :: (calculate grid from kernel parameters). |
39 |
jmc |
1.2 |
C | | |-INI_SPHERICAL_POLAR_GRID :: Spherical polar horiz. grid setting |
40 |
|
|
C | | | :: (calculate grid from kernel parameters). |
41 |
jmc |
1.3 |
C | | |-INI_CURVILINEAR_GRID :: General orthogonal, structured horiz. grid |
42 |
|
|
C | | | :: initialisation; input from raw grid files |
43 |
|
|
C | | | :: (LONC.bin, LATC.bin, DXF.bin, ... ) or per |
44 |
|
|
C | | | :: face file: horizGridFile(.faceXXX.bin) |
45 |
|
|
C | | |-INI_CYLINDER_GRID :: Cylindrical horiz. grid setting |
46 |
|
|
C | | |
47 |
|
|
C | |-LOAD_REF_FILES :: Read-in reference vertical profiles (T,S,Rho) |
48 |
|
|
C | |-INI_EOS :: Initialise Equation Of State (EOS) coefficients |
49 |
|
|
C | |-SET_REF_STATE :: Set reference pressure/geopotential, reference |
50 |
|
|
C | | :: stratification (for implicit IGW), vertical |
51 |
|
|
C | | :: velocity scaling factor and anelastic ref. density |
52 |
|
|
C | |-SET_GRID_FACTORS :: Set grid factors (fct of k) for deep-atmosphere |
53 |
adcroft |
1.1 |
C | | |
54 |
jmc |
1.2 |
C | |-INI_DEPTHS :: Read (from "bathyFile") or set bathymetry/orography. |
55 |
adcroft |
1.1 |
C | |-INI_MASKS_ETC :: Derive horizontal and vertical cell fractions and |
56 |
|
|
C | | :: land masking for solid-fluid boundaries. |
57 |
|
|
C | | |
58 |
jmc |
1.2 |
C | |-PACKAGES_INIT_FIXED :: do all packages fixed-initialisation setting |
59 |
|
|
C | | |- ${PKG}_INIT_FIXED |
60 |
|
|
C | | |
61 |
jmc |
1.3 |
C | |-INI_GLOBAL_DOMAIN :: Initialise domain related (global) quantities. |
62 |
|
|
C | |-INI_LINEAR_PHISURF :: Set ref. surface Bo_surf |
63 |
adcroft |
1.1 |
C | | |
64 |
|
|
C | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane, |
65 |
jmc |
1.3 |
C | | :: sphere options are coded. |
66 |
|
|
C | |-INI_CG2D :: 2D conjugate grad solver initialisation. |
67 |
|
|
C | |-INI_CG3D :: 3D conjugate grad solver initialisation. |
68 |
jmc |
1.2 |
C | | |
69 |
|
|
C | |-CONFIG_SUMMARY :: Provide synopsis of kernel setup. Includes |
70 |
|
|
C | | :: annotated table of kernel parameter settings. |
71 |
|
|
C | | |
72 |
|
|
C | |-PACKAGES_CHECK :: call each package configuration checking S/R |
73 |
|
|
C | | |- ${PKG}_CHECK |
74 |
adcroft |
1.1 |
C | | |
75 |
jmc |
1.2 |
C | |-CONFIG_CHECK :: Check config and parameter consistency. |
76 |
adcroft |
1.1 |
C | | |
77 |
jmc |
1.3 |
C | |-WRITE_GRID :: write grid fields to output files |
78 |
|
|
C | |-CPL_EXCH_CONFIGS :: exchange config with coupler-interface |
79 |
adcroft |
1.1 |
C | |
80 |
jmc |
1.2 |
C |-CTRL_UNPACK :: Control vector support package. see pkg/ctrl |
81 |
jmc |
1.3 |
C |-COST_DEPENDENT_INIT :: ( see pkg/cost ) |
82 |
adcroft |
1.1 |
C | |
83 |
|
|
C |-ADTHE_MAIN_LOOP :: Derivative evaluating form of main time stepping loop |
84 |
jmc |
1.2 |
C ! :: Automatically generated by TAMC/TAF. |
85 |
adcroft |
1.1 |
C | |
86 |
jmc |
1.2 |
C |-THE_MAIN_LOOP :: Main timestepping loop routine. |
87 |
adcroft |
1.1 |
C | | |
88 |
jmc |
1.3 |
C | |-INITIALISE_VARIA :: Set the initial conditions for time evolving fields |
89 |
adcroft |
1.1 |
C | | | |
90 |
jmc |
1.2 |
C #ifdef ALLOW_AUTODIFF |
91 |
|
|
C | | |-INI_DEPTHS \ |
92 |
|
|
C | | |-CTRL_DEPTH_INI \ |
93 |
|
|
C | | |-UPDATE_MASKS_ETC } ALLOW_DEPTH_CONTROL case |
94 |
|
|
C | | |-UPDATE_CG2D / |
95 |
|
|
C #endif |
96 |
|
|
C | | |-INI_NLFS_VARS :: Initialise all Non-Lin Free-Surf arrays (SURFACE.h) |
97 |
|
|
C | | |-INI_DYNVARS :: Initialise to zero all DYNVARS.h arrays |
98 |
|
|
C | | |-INI_NH_VARS :: Initialise to zero all NH_VARS.h arrays |
99 |
adcroft |
1.1 |
C | | | |
100 |
jmc |
1.3 |
C | | |-INI_FIELDS :: Control initialising model fields to non-zero |
101 |
|
|
C | | | |-INI_VEL :: Initialize 3D flow field. |
102 |
|
|
C | | | |-INI_THETA :: Set model initial temperature field. |
103 |
|
|
C | | | |-INI_SALT :: Set model initial salinity field. |
104 |
|
|
C | | | |-INI_PSURF :: Set model initial free-surface height/pressure. |
105 |
|
|
C | | | |-READ_PICKUP :: Read in main model pickup files to restart a run. |
106 |
adcroft |
1.1 |
C | | | |
107 |
jmc |
1.2 |
C | | |-INI_MIXING :: Initialise diapycnal diffusivity. |
108 |
adcroft |
1.1 |
C | | | |
109 |
jmc |
1.3 |
C | | |-INI_FORCING :: Set model initial forcing fields, either |
110 |
|
|
C | | | | :: set in-line or from file as shown here: |
111 |
adcroft |
1.1 |
C | | | |-READ_FLD_XY_RS(zonalWindFile) |
112 |
|
|
C | | | |-READ_FLD_XY_RS(meridWindFile) |
113 |
jmc |
1.2 |
C | | | |-READ_FLD_XY_RS(surfQnetFile) |
114 |
adcroft |
1.1 |
C | | | |-READ_FLD_XY_RS(EmPmRfile) |
115 |
|
|
C | | | |-READ_FLD_XY_RS(thetaClimFile) |
116 |
|
|
C | | | |-READ_FLD_XY_RS(saltClimFile) |
117 |
|
|
C | | | |-READ_FLD_XY_RS(surfQswFile) |
118 |
|
|
C | | | |
119 |
jmc |
1.3 |
C | | |-AUTODIFF_INIT_VARIA :: (see pkg/autodiff ) |
120 |
jmc |
1.2 |
C | | | |
121 |
|
|
C | | |-PACKAGES_INIT_VARIABLES :: Does initialisation of time evolving |
122 |
|
|
C | | | | ${PKG}_INIT_VARIA :: package data. |
123 |
|
|
C | | | |
124 |
jmc |
1.3 |
C | | |-COST_INIT_VARIA :: ( see pkg/cost ) |
125 |
|
|
C | | |-CONVECTIVE_ADJUSTMENT_INI :: Apply conv. adjustment to initial state |
126 |
jmc |
1.2 |
C | | | |
127 |
|
|
C | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord) |
128 |
|
|
C | | |-UPDATE_R_STAR :: Update the level thickness fraction (r* coord). |
129 |
|
|
C | | |-UPDATE_SIGMA :: Update the level thickness fraction (sigma-coord). |
130 |
adcroft |
1.1 |
C | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
131 |
|
|
C | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
132 |
jmc |
1.2 |
C | | | |
133 |
jmc |
1.3 |
C | | |-UPDATE_CG2D :: Update 2D conjugate grad. for Free-Surf. |
134 |
jmc |
1.2 |
C | | | |
135 |
jmc |
1.3 |
C | | |-INTEGR_CONTINUITY :: Integrate the continuity Equation |
136 |
jmc |
1.2 |
C | | | |-INTEGRATE_FOR_W :: Integrate for vertical velocity |
137 |
|
|
C | | | |-OBCS_APPLY_W :: Open boundary package (see pkg/obcs). |
138 |
|
|
C | | | |-UPDATE_ETAH :: Update Surface height/pressure |
139 |
|
|
C | | | |
140 |
|
|
C | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord) |
141 |
|
|
C | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
142 |
|
|
C | | | |
143 |
|
|
C | | |-STATE_SUMMARY :: Summarise model prognostic variables. |
144 |
|
|
C | | | |
145 |
|
|
C | | |-MONITOR :: Monitor state (see pkg/monitor) |
146 |
|
|
C | | | |
147 |
|
|
C | | |-DO_STATEVARS_TAVE :: Time averaging package ( see pkg/timeave ). |
148 |
jmc |
1.3 |
C | | | |-TIMEAVE_STATVARS :: Accumulate main model state variables |
149 |
|
|
C | | | |-PTRACERS_TIMEAVE :: Accumulate passive tracers variables |
150 |
jmc |
1.2 |
C | | | |
151 |
|
|
C | | |-DO_THE_MODEL_IO :: Controlling routine for IO |
152 |
|
|
C | | | |-WRITE_STATE :: Write model state variables. |
153 |
|
|
C | | | |-TIMEAVE_STATV_WRITE :: Write Time averaged output (see pkg/timeave) |
154 |
jmc |
1.3 |
C | | | |-FIZHI_WRITE_STATE :: Write Fizhi pkg output (see pkg/fizhi) |
155 |
|
|
C | | | |-AIM_WRITE_TAVE :: Write AIM pkg output (see pkg/aim_v23) |
156 |
|
|
C | | | |-LAND_OUTPUT :: Write Land pkg output (see pkg/land) |
157 |
|
|
C | | | |-OBCS_OUTPUT :: Write OBCS pkg output (see pkg/obcs) |
158 |
|
|
C | | | |-GMREDI_OUTPUT :: Write GM-Redi pkg output (see pkg/gmredi) |
159 |
|
|
C | | | |-KPP_OUTPUT :: Write KPP pkg output (see pkg/kpp) |
160 |
|
|
C | | | |-PP81_OUTPUT :: Write PP81 pkg output (see pkg/pp81) |
161 |
|
|
C | | | |-KL10_OUTPUT :: Write KL10 pkg output (see pkg/kl10) |
162 |
|
|
C | | | |-MY82_OUTPUT :: Write MY82 pkg output (see pkg/my82) |
163 |
|
|
C | | | |-OPPS_OUTPUT :: Write OPPS pkg output (see pkg/opps) |
164 |
|
|
C | | | |-GGL90_OUTPUT :: Write GGL90 pkg output (see pkg/ggl90) |
165 |
|
|
C | | | |-SBO_CALC :: Compute SBO diagnostics (see pkg/sbo) |
166 |
|
|
C | | | |-SBO_OUTPUT :: Write SBO pkg output (see pkg/sbo) |
167 |
|
|
C | | | |-SEAICE_OUTPUT :: Write SeaIce pkg output (see pkg/seaice) |
168 |
|
|
C | | | |-SHELFICE_OUTPUT :: Write ShelfIce pkg output (see pkg/shelfice) |
169 |
|
|
C | | | |-BULKF_OUTPUT :: Write Bulk-Force output (see pkg/bulK_force) |
170 |
|
|
C | | | |-THSICE_OUTPUT :: Write ThSIce pkg output (see pkg/thsice) |
171 |
|
|
C | | | |-PTRACERS_OUTPUT :: Write pTracers pkg output (see pkg/ptracers) |
172 |
|
|
C | | | |-MATRIX_OUTPUT :: Write Matrix pkg output (see pkg/matrix) |
173 |
|
|
C | | | |-GCHEM_OUTPUT :: Write Geochemistry pkg output (see pkg/gchem) |
174 |
|
|
C | | | |-CPL_OUTPUT :: Write Coupler-Interface output (see |
175 |
|
|
C | | | | :: pkg/atm_compon_interf, pkg/ocn_compon_interf) |
176 |
|
|
C | | | |-LAYERS_CALC :: Calculate layers diagnostics (see pkg/layers) |
177 |
|
|
C | | | |-LAYERS_OUTPUT :: Write Layers pkg output (see pkg/layers) |
178 |
jmc |
1.2 |
C | | | |-DIAGNOSTICS_WRITE :: Write pkg/diagnostics output |
179 |
|
|
C | | | |
180 |
adcroft |
1.1 |
C====|>| **************************** |
181 |
|
|
C====|>| BEGIN MAIN TIMESTEPPING LOOP |
182 |
|
|
C====|>| **************************** |
183 |
jmc |
1.2 |
C | |-COST_AVERAGESFIELDS :: time-averaged Cost function terms (see pkg/cost) |
184 |
jmc |
1.3 |
C | |-PROFILES_INLOOP :: ( see pkg/profiles ) |
185 |
jmc |
1.2 |
C | / |
186 |
|
|
C | |-MAIN_DO_LOOP :: Open-AD case: Main timestepping loop routine |
187 |
|
|
C | \ otherwise: just call FORWARD_STEP |
188 |
|
|
C | | |
189 |
|
|
C/\ | |-FORWARD_STEP :: Step forward a time-step ( AT LAST !!! ) |
190 |
|
|
C/\ | | | |
191 |
jmc |
1.3 |
C/\ | | |-AUTODIFF_INADMODE_UNSET :: Set/reset some adjoint flags |
192 |
|
|
C/\ | | |-RESET_NLFS_VARS :: Reset some Non-Lin Free-Surf vars (Adjoint) |
193 |
|
|
C/\ | | |-UPDATE_R_STAR :: Reset r-star factor variables (Adjoint) |
194 |
|
|
C/\ | | |-UPDATE_SURF_DR :: Reset NLFS surface thickness vars (Adjoint) |
195 |
|
|
C/\ | | | |
196 |
|
|
C/\ | | |-PTRACERS_SWITCH_ONOFF :: Set/reset pTracers time-stepping switch |
197 |
|
|
C/\ | | |-DIAGNOSTICS_SWITCH_ONOFF :: Activate/de-activate diagnostics |
198 |
|
|
C/\ | | |-DO_STATEVARS_DIAGS ( 0 ) :: fill-up state variable diagnostics |
199 |
|
|
C/\ | | | |
200 |
|
|
C/\ | | |-NEST_CHILD_SETMEMO :: Nesting interface |
201 |
|
|
C/\ | | |-NEST_PARENT_IO_1 :: Nesting interface |
202 |
|
|
C/\ | | | |
203 |
|
|
C/\ | | |-LOAD_FIELDS_DRIVER :: Control loading of input fields from files |
204 |
jmc |
1.2 |
C/\ | | | |
205 |
jmc |
1.3 |
C/\ | | |-BULKF_FORCING :: Calculate surface forcing (see pkg/bulk_force) |
206 |
|
|
C/\ | | |-CHEAPAML :: Cheap AML driver ( see pkg/cheapaml ) |
207 |
jmc |
1.2 |
C/\ | | |-CTRL_MAP_FORCING :: Control vector support package. (see pkg/ctrl) |
208 |
jmc |
1.3 |
C/\ | | |-DUMMY_IN_STEPPING :: Autodiff package ( pkg/autodiff ). |
209 |
adcroft |
1.1 |
C/\ | | | |
210 |
jmc |
1.2 |
C/\ | | |-CPL_EXPORT_MY_DATA :: Send coupling fields to coupler |
211 |
|
|
C/\ | | |-CPL_IMPORT_EXTERNAL_DATA :: Receive coupling fields from coupler |
212 |
adcroft |
1.1 |
C/\ | | | |
213 |
jmc |
1.3 |
C/\ | | |-OASIS_PUT :: Oasis coupler interface |
214 |
|
|
C/\ | | |-OASIS_GET :: Oasis coupler interface |
215 |
|
|
C/\ | | | |
216 |
|
|
C/\ | | |-EBM_DRIVER :: Calculate EBM type atmospheric forcing (see pkg/ebm) |
217 |
|
|
C/\ | | | |
218 |
jmc |
1.2 |
C/\ | | |-DO_ATMOSPHERIC_PHYS :: Atmospheric physics computation |
219 |
jmc |
1.3 |
C/\ | | | | |
220 |
|
|
C/\ | | | |-UPDATE_OCEAN_EXPORTS :: ( see pkg/fizhi ) |
221 |
|
|
C/\ | | | |-UPDATE_EARTH_EXPORTS :: ( see pkg/fizhi ) |
222 |
|
|
C/\ | | | |-UPDATE_CHEMISTRY_EXPORTS :: ( see pkg/fizhi ) |
223 |
|
|
C/\ | | | |-FIZHI_WRAPPER :: ( see pkg/fizhi ) |
224 |
|
|
C/\ | | | |-STEP_FIZHI_FG :: ( see pkg/fizhi ) |
225 |
|
|
C/\ | | | |-FIZHI_UPDATE_TIME :: ( see pkg/fizhi ) |
226 |
|
|
C/\ | | | | |
227 |
|
|
C/\ | | | |-ATM_PHYS_DRIVER :: ( see pkg/atm_phys ) |
228 |
|
|
C/\ | | | | |
229 |
|
|
C/\ | | | |-AIM_DO_PHYSICS :: ( see pkg/aim_v23 ) |
230 |
jmc |
1.2 |
C/\ | | | |
231 |
|
|
C/\ | | |-DO_OCEANIC_PHYS :: Oceanic (& seaice) physics computation |
232 |
jmc |
1.3 |
C/\ | | | | |
233 |
jmc |
1.2 |
C/\ | | | |-OBCS_CALC :: Open boundary. package (see pkg/obcs). |
234 |
jmc |
1.3 |
C/\ | | | | |
235 |
|
|
C/\ | | | |-FRAZIL_CALC_RHS :: Compute FRAZIL tendencies ( see pkg/frazil ) |
236 |
|
|
C/\ | | | |-THSICE_MAIN :: Thermodynamic sea-ice driver (see pkg/thsice) |
237 |
|
|
C/\ | | | |-SEAICE_MODEL :: Sea-ice model driver (see pkg/seaice ) |
238 |
|
|
C/\ | | | |-SEAICE_COST_SENSI :: Sea-ice cost-function (see pkg/seaice ) |
239 |
|
|
C/\ | | | |-SHELFICE_THERMODYNAMICS :: Compute ShelfIce thermo (pkg/shelfice) |
240 |
|
|
C/\ | | | |-ICEFRONT_THERMODYNAMICS :: Compute IceFront thermo (pkg/icefront) |
241 |
|
|
C/\ | | | | |
242 |
|
|
C/\ | | | |-SALT_PLUME_DO_EXCH :: (see pkg/salt_plume ) |
243 |
|
|
C/\ | | | |-FREEZE_SURFACE :: Prevent SST to fall below TFreeze |
244 |
|
|
C/\ | | | |-OCN_APPLY_IMPORT :: Apply imported fields from coupler |
245 |
|
|
C/\ | | | |-EXTERNAL_FORCING_SURF:: Compute appropriately dimensioned |
246 |
|
|
C/\ | | | | :: surface forcing terms. |
247 |
|
|
C/\ | | | |-FIND_RHO_2D @ p(k) :: Calculate [rho(T,S,p)-Rho_0] of a slice |
248 |
|
|
C/\ | | | |-FIND_RHO_2D @ p(k-1) :: Calculate [rho(T,S,p)-Rho_0] of a slice |
249 |
|
|
C/\ | | | |-GRAD_SIGMA :: Calculate isoneutral gradients |
250 |
|
|
C/\ | | | |-CALC_IVDC :: Set Implicit Vertical Diffusivity for Convection |
251 |
|
|
C/\ | | | |-CALC_OCE_MXLAYER :: Diagnose Oceanic Mixed Layer depth |
252 |
|
|
C/\ | | | | |
253 |
|
|
C/\ | | | |-SALT_PLUME_CALC_DEPTH :: (see pkg/salt_plume ) |
254 |
|
|
C/\ | | | |-SALT_PLUME_VOLFRAC :: (see pkg/salt_plume ) |
255 |
|
|
C/\ | | | |-SALT_PLUME_APPLY (Temp) :: (see pkg/salt_plume ) |
256 |
|
|
C/\ | | | |-SALT_PLUME_APPLY (Salt) :: (see pkg/salt_plume ) |
257 |
|
|
C/\ | | | |-SALT_PLUME_FORCING_SURF :: (see pkg/salt_plume ) |
258 |
|
|
C/\ | | | |-KPP_CALC :: Compute KPP vertical mixing ( see pkg/kpp ) |
259 |
|
|
C/\ | | | |-PP81_CALC :: Compute PP81 vertical mixing ( see pkg/pp81 ) |
260 |
|
|
C/\ | | | |-KL10_CALC :: Compute KL10 vertical mixing ( see pkg/kl10 ) |
261 |
|
|
C/\ | | | |-MY82_CALC :: Compute MY82 vertical mixing ( see pkg/kl10 ) |
262 |
|
|
C/\ | | | |-GGL90_CALC :: Compute GGL90 vertical mixing (see pkg/ggl10) |
263 |
|
|
C/\ | | | |-GMREDI_CALC_TENSOR :: Compute GM-Redi tensor ( see pkg/gmredi ) |
264 |
|
|
C/\ | | | |-DWNSLP_CALC_FLOW :: Compute Down-Slope flow (see pkg/down_slope) |
265 |
|
|
C/\ | | | |-BBL_CALC_RHS :: Compute BBL tendencies ( see pkg/bbl ) |
266 |
|
|
C/\ | | | |-MYPACKAGE_CALC_RHS :: Compute mypackage tendencies (pkg/mypackage) |
267 |
|
|
C/\ | | | | |
268 |
|
|
C/\ | | | |-GMREDI_DO_EXCH :: ( see pkg/gmredi ) |
269 |
|
|
C/\ | | | |-KPP_DO_EXCH :: ( see pkg/kpp ) |
270 |
|
|
C/\ | | | |-DIAGS_RHO_G :: Compute some density related diagnostics |
271 |
|
|
C/\ | | | |-DIAGS_OCEANIC_SURF_FLUX :: Diagnose oceanic surface fluxes |
272 |
|
|
C/\ | | | |-SALT_PLUME_DIAGNOSTICS_FILL :: (see pkg/salt_plume ) |
273 |
|
|
C/\ | | | |-ECCO_PHYS :: ( see pkg/ecco ) |
274 |
|
|
C/\ | | | |
275 |
jmc |
1.4 |
C/\ | | |-STREAMICE_TIMESTEP :: ( see pkg/streamice ) |
276 |
jmc |
1.3 |
C/\ | | | |
277 |
|
|
C/\ | | |-GCHEM_CALC_TENDENCY :: geochemistry driver routine (see pkg/gchem) |
278 |
|
|
C/\ | | | |
279 |
|
|
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep ) |
280 |
|
|
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep ) |
281 |
|
|
C/\ | | | |
282 |
|
|
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer equations driver. |
283 |
|
|
C/\ | | | | (synchronous time-stepping case) |
284 |
|
|
C/\ | | | |-CALC_WSURF_TR :: Compute T & S Linear-Free-Surf correction |
285 |
|
|
C/\ | | | |-PTRACERS_CALC_WSURF_TR :: Compute Tracers Linear-Free-Surf correct. |
286 |
|
|
C/\ | | | | |
287 |
|
|
C/\ | | | |-GMREDI_RESIDUAL_FLOW :: Get the flow field used to advect tracers |
288 |
jmc |
1.2 |
C/\ | | | | |
289 |
|
|
C/\ | | | |-TEMP_INTEGRATE :: Step forward Prognostic Eq for Temperature. |
290 |
jmc |
1.3 |
C/\ | | | | | |
291 |
|
|
C/\ | | | | |-ADAMS_BASHFORTH3 :: Extrapolate tracer forward in time (AB-3) |
292 |
|
|
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tracer forward in time (AB-2) |
293 |
|
|
C/\ | | | | |-CALC_3D_DIFFUSIVITY :: set vertical diffusivity |
294 |
|
|
C/\ | | | | | |
295 |
|
|
C/\ | | | | |-GAD_SOM_ADVECT :: Second Order Moment (SOM) advection |
296 |
jmc |
1.2 |
C/\ | | | | |-GAD_ADVECTION :: Generalised advection driver (multi-dim |
297 |
|
|
C/\ | | | | | advection case) (see pkg/gad). |
298 |
jmc |
1.3 |
C/\ | | | | |-CALC_ADV_FLOW :: set 3-D flow field to advect tracer |
299 |
|
|
C/\ | | | | |-APPLY_FORCING_T :: Problem specific forcing for temperature. |
300 |
jmc |
1.2 |
C/\ | | | | |-GAD_CALC_RHS :: Calculate Advection-Diffusion tendency terms |
301 |
jmc |
1.3 |
C/\ | | | | | |
302 |
|
|
C/\ | | | | |-ADAMS_BASHFORTH3 :: Extrapolate tendency forward in time (AB-3) |
303 |
|
|
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendency forward in time (AB-2) |
304 |
|
|
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gt for free-surface height. |
305 |
|
|
C/\ | | | | |-DWNSLP_APPLY :: Add pkg/down_slope tendency |
306 |
|
|
C/\ | | | | | |
307 |
jmc |
1.2 |
C/\ | | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
308 |
jmc |
1.3 |
C/\ | | | | | |
309 |
|
|
C/\ | | | | |-GAD_IMPLICIT_R :: Solve vertical implicit Advect-Diffus. eqn. |
310 |
jmc |
1.2 |
C/\ | | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
311 |
|
|
C/\ | | | | |-CYCLE_AB_TRACER :: Cycle time-stepping arrays for tracer field |
312 |
jmc |
1.3 |
C/\ | | | | |-CYCLE_TRACER :: Cycle time-stepping arrays for tracer field |
313 |
jmc |
1.2 |
C/\ | | | | |
314 |
|
|
C/\ | | | |-SALT_INTEGRATE :: Step forward Prognostic Eq for Salinity. |
315 |
|
|
C/\ | | | | | same sequence of calls as in TEMP_INTEGRATE |
316 |
|
|
C/\ | | | | |
317 |
|
|
C/\ | | | |-PTRACERS_INTEGRATE :: Integrate other tracer(s) (see pkg/ptracers). |
318 |
|
|
C/\ | | | | | same sequence of calls as in TEMP_INTEGRATE |
319 |
|
|
C/\ | | | | |-OBCS_APPLY_PTRACER :: Open boundary package for pTracers |
320 |
adcroft |
1.1 |
C/\ | | | | |
321 |
jmc |
1.2 |
C/\ | | | |-OBCS_APPLY_TS :: Open boundary package (see pkg/obcs ). |
322 |
adcroft |
1.1 |
C/\ | | | |
323 |
jmc |
1.3 |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep ) |
324 |
|
|
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep ) |
325 |
|
|
C/\ | | | |
326 |
|
|
C/\ | | |-DO_STAGGER_FIELDS_EXCHANGES :: Update overlap regions of arrays |
327 |
|
|
C/\ | | | Theta & Salt (implicit IGW case) |
328 |
|
|
C/\ | | | |
329 |
adcroft |
1.1 |
C/\ | | |-DYNAMICS :: Momentum equations driver. |
330 |
|
|
C/\ | | | | |
331 |
jmc |
1.2 |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Calculate the gradient of the surface |
332 |
adcroft |
1.1 |
C/\ | | | | Potential anomaly. |
333 |
jmc |
1.2 |
C/\ | | | |-CALC_VISCOSITY :: Calculate net vertical viscosity |
334 |
jmc |
1.3 |
C/\ | | | |-MOM_CALC_3D_STRAIN :: Calculates the strain tensor of 3D flow field |
335 |
|
|
C/\ | | | |-OBCS_COPY_UV_N :: for Stevens bndary Conditions (see pkg/obcs) |
336 |
|
|
C/\ | | | | |
337 |
jmc |
1.2 |
C/\ | | | |-CALC_PHI_HYD :: Integrate the hydrostatic relation. |
338 |
jmc |
1.3 |
C/\ | | | |-MOM_FLUXFORM :: Flux Form momentum eqn. (pkg/mom_fluxform) |
339 |
|
|
C/\ | | | |-MOM_VECINV :: Vector Invariant momentum eqn (pkg/mom_vecinv) |
340 |
|
|
C/\ | | | |-MOM_CALC_SMAG_3D :: Calculate Smagorinsky 3D (harmonic) viscosities |
341 |
|
|
C/\ | | | |-MOM_UV_SMAG_3D :: Calculate U,V mom. tendency due to Smag 3D Visc |
342 |
|
|
C/\ | | | |-TIMESTEP :: Step horizontal momentum fields forward in time |
343 |
|
|
C/\ | | | | |
344 |
|
|
C/\ | | | |-MOM_U_IMPLICIT_R :: Solve implicitly vertical Adv-Diffus equation. |
345 |
jmc |
1.2 |
C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
346 |
jmc |
1.3 |
C/\ | | | |-OBCS_SAVE_UV_N :: for Stevens bndary Conditions (see pkg/obcs) |
347 |
|
|
C/\ | | | |-OBCS_APPLY_UV :: Apply Open bndary Conditions to provisional U,V |
348 |
|
|
C/\ | | | |-IMPLDIFF :: (CD-Scheme) Solve vertical impl. diffus. eqn |
349 |
|
|
C/\ | | | | |
350 |
|
|
C/\ | | | |-CALC_GW :: Vert. momentum tendency terms (Non-Hydrostatic) |
351 |
|
|
C/\ | | | | |-MOM_W_SMAG_3D :: Calculate W mom. tendency due to Smag 3D Visc |
352 |
|
|
C/\ | | | |-TIMESTEP_WVEL :: Step vert mom forward in time (Non-Hydrostatic) |
353 |
adcroft |
1.1 |
C/\ | | | |
354 |
jmc |
1.3 |
C/\ | | |-MNC_UPDATE_TIME :: Update MNC time record (see pkg/mnc) |
355 |
|
|
C/\ | | | |
356 |
|
|
C/\ | | |-UPDATE_R_STAR :: Update the level thickness fraction (r* coord). |
357 |
|
|
C/\ | | |-UPDATE_SIGMA :: Update the level thickness fraction (sigma-coord). |
358 |
|
|
C/\ | | |-UPDATE_R_STAR :: Update the level thickness fraction. |
359 |
adcroft |
1.1 |
C/\ | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
360 |
jmc |
1.3 |
C/\ | | |-UPDATE_CG2D :: Update 2D conjugate grad. for Free-Surf. |
361 |
|
|
C/\ | | | |
362 |
|
|
C/\ | | |-SHAP_FILT_APPLY_UV :: Apply Shapiro Filter to provisional velocity |
363 |
|
|
C/\ | | |-ZONAL_FILT_APPLY_UV :: Apply Zonal Filter to provisional velocity |
364 |
adcroft |
1.1 |
C/\ | | | |
365 |
jmc |
1.2 |
C/\ | | |-SOLVE_FOR_PRESSURE :: Find surface pressure. |
366 |
jmc |
1.3 |
C/\ | | | |-CALC_DIV_GHAT :: Form the RHS of the surface pressure eqn. |
367 |
adcroft |
1.1 |
C/\ | | | |-CG2D :: Two-dim pre-con. conjugate-gradient. |
368 |
jmc |
1.3 |
C/\ | | | |-PRE_CG3D :: Finish to set the RHS of the 3-D pressure eqn. |
369 |
adcroft |
1.1 |
C/\ | | | |-CG3D :: Three-dim pre-con. conjugate-gradient solver. |
370 |
jmc |
1.3 |
C/\ | | | |-POST_CG3D :: finalise solution of NH and Free-Surf pressure |
371 |
adcroft |
1.1 |
C/\ | | | |
372 |
jmc |
1.2 |
C/\ | | |-MOMENTUM_CORRECTION_STEP :: Finalise momentum stepping |
373 |
jmc |
1.3 |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure |
374 |
|
|
C/\ | | | |-CORRECTION_STEP :: Pressure correction to momentum |
375 |
|
|
C/\ | | | |-OBCS_APPLY_UV :: Open boundary package (see pkg/obcs). |
376 |
|
|
C/\ | | | |-SHAP_FILT_APPLY_UV :: Apply Shapiro Filter to latest velocity |
377 |
|
|
C/\ | | | |-ZONAL_FILT_APPLY_UV :: Apply Zonal Filter to latest velocity |
378 |
|
|
C/\ | | | |
379 |
|
|
C/\ | | |-INTEGR_CONTINUITY :: Integrate continuity equation (see above) |
380 |
|
|
C/\ | | | |
381 |
|
|
C/\ | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord) |
382 |
|
|
C/\ | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
383 |
|
|
C/\ | | | |
384 |
|
|
C/\ | | |-DO_STAGGER_FIELDS_EXCHANGES :: Update overlap regions of arrays |
385 |
|
|
C/\ | | | uVel,vVel & wVel (stagger-time-step case) |
386 |
|
|
C/\ | | | |
387 |
|
|
C/\ | | |-DO_STATEVARS_DIAGS ( 1 ) :: fill-up state variable diagnostics |
388 |
|
|
C/\ | | | |
389 |
|
|
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer Eq. driver (see above). |
390 |
|
|
C/\ | | | (staggered time-stepping case) |
391 |
|
|
C/\ | | | |
392 |
|
|
C/\ | | |-TRACERS_CORRECTION_STEP :: Finalise tracer stepping: |
393 |
|
|
C/\ | | | | :: apply filter, conv.adjustment |
394 |
|
|
C/\ | | | |-TRACERS_IIGW_CORRECTION :: apply Implicit IGW adjustment to T & S |
395 |
|
|
C/\ | | | |-SHAP_FILT_APPLY_TS :: Apply Shapiro Filter to latest T & S |
396 |
|
|
C/\ | | | |-ZONAL_FILT_APPLY_TS :: Apply Zonal Filter to latest T & S |
397 |
|
|
C/\ | | | |-PTRACERS_ZONAL_FILT_APPLY :: Apply Zonal Filter to pTracers |
398 |
|
|
C/\ | | | |-SALT_FILL :: Fill up negative Salt |
399 |
|
|
C/\ | | | |-OPPS_INTERFACE :: ( see pkg/opps ) |
400 |
|
|
C/\ | | | |-CONVECTIVE_ADJUSTMENT :: Apply convective adjustment |
401 |
|
|
C/\ | | | |-MATRIX_STORE_TENDENCY_IMP :: ( see pkg/matrix ) |
402 |
|
|
C/\ | | | |
403 |
|
|
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep ) |
404 |
|
|
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep ) |
405 |
|
|
C/\ | | | |
406 |
|
|
C/\ | | |-GCHEM_FORCING_SEP :: Tracer forcing for gchem pkg (if tracer |
407 |
|
|
C/\ | | | :: dependent tendencies calculated separately) |
408 |
jmc |
1.2 |
C/\ | | | |
409 |
jmc |
1.3 |
C/\ | | |-DO_FIELDS_BLOCKING_EXCHANGES :: Sync up overlap regions. |
410 |
|
|
C/\ | | | |
411 |
|
|
C/\ | | |-DO_STATEVARS_DIAGS ( 2 ) :: fill-up state variable diagnostics |
412 |
adcroft |
1.1 |
C/\ | | | |
413 |
jmc |
1.3 |
C/\ | | |-GRIDALT_UPDATE :: ( see pkg/gridalt ) |
414 |
|
|
C/\ | | |-STEP_FIZHI_CORR :: ( see pkg/fizhi ) |
415 |
jmc |
1.2 |
C/\ | | | |
416 |
jmc |
1.3 |
C/\ | | |-FLT_MAIN :: Step forward Floats (see pkg/flt) |
417 |
adcroft |
1.1 |
C/\ | | | |
418 |
jmc |
1.3 |
C/\ | | |-DO_STATEVARS_TAVE :: Time averaging package (see above) |
419 |
adcroft |
1.1 |
C/\ | | | |
420 |
jmc |
1.3 |
C/\ | | |-NEST_PARENT_IO_2 :: Nesting interface |
421 |
|
|
C/\ | | |-NEST_CHILD_TRANSP :: Nesting interface |
422 |
adcroft |
1.1 |
C/\ | | | |
423 |
jmc |
1.2 |
C/\ | | |-MONITOR :: Monitor package (pkg/monitor). |
424 |
|
|
C/\ | | | |
425 |
jmc |
1.3 |
C/\ | | |-COST_TILE :: ( see pkg/cost ) |
426 |
|
|
C/\ | | | |
427 |
|
|
C/\ | | |-DO_THE_MODEL_IO :: Controlling routine for IO (see above) |
428 |
|
|
C/\ | | | |
429 |
|
|
C/\ | | |-PTRACERS_RESET :: Re-initialize PTRACERS ( see pkg/ptracers ) |
430 |
|
|
C/\ | | | |
431 |
|
|
C/\ | | |-DO_WRITE_PICKUP :: Controlling routine for writing files to restart |
432 |
|
|
C/\ | | | |-PACKAGES_WRITE_PICKUP :: Write pickup files for each package |
433 |
|
|
C/\ | | | | | :: which needs it to restart |
434 |
|
|
C/\ | | | | |-GAD_WRITE_PICKUP :: Write Generic AdvDiff pickups for SOM |
435 |
|
|
C/\ | | | | | :: advection scheme (pkg/generic_advdiff) |
436 |
|
|
C/\ | | | | |-CD_CODE_WRITE_PICKUP :: Write CD-code pickups (see pkg/cd_code) |
437 |
|
|
C/\ | | | | |-OBCS_WRITE_PICKUP :: Write OBCS pickups (see pkg/obcs) |
438 |
|
|
C/\ | | | | |-GGL90_WRITE_PICKUP :: Write GGL90 pickups (see pkg/ggl90) |
439 |
|
|
C/\ | | | | |-BBL_WRITE_PICKUP :: Write BBL pickups (see pkg/bbl) |
440 |
|
|
C/\ | | | | |-CHEAPAML_WRITE_PICKUP :: Write CheapAML pickups (pkg/cheapaml) |
441 |
|
|
C/\ | | | | |-FLT_WRITE_PICKUP :: Write Floats pickups (see pkg/flt) |
442 |
|
|
C/\ | | | | |-PTRACERS_WRITE_PICKUP :: Write pTracers pickups (pkg/ptracers) |
443 |
|
|
C/\ | | | | |-GCHEM_WRITE_PICKUP :: Write Geo-Chem pickups (see pkg/gchem) |
444 |
|
|
C/\ | | | | |-SEAICE_WRITE_PICKUP :: Write SeaIce pickups (see pkg/seaice) |
445 |
|
|
C/\ | | | | |-STREAMICE_WRITE_PICKUP :: Write StreamIce pickups (pkg/streamice) |
446 |
|
|
C/\ | | | | |-THSICE_WRITE_PICKUP :: Write ThSIce pickups (see pkg/thsice) |
447 |
|
|
C/\ | | | | |-LAND_WRITE_PICKUP :: Write Land pickups (see pkg/land) |
448 |
|
|
C/\ | | | | |-ATM_PHYS_WRITE_PICKUP :: Write Atm-Phys pickups (pkg/atm_phys) |
449 |
|
|
C/\ | | | | |-FIZHI_WRITE_PICKUP :: Write Fizhi pickups (see pkg/fizhi) |
450 |
|
|
C/\ | | | | |-FIZHI_WRITE_VEGTILES :: Write Fizhi VegTiles (see pkg/fizhi) |
451 |
|
|
C/\ | | | | |-FIZHI_WRITE_DATETIME :: Write Fizhi DateTime (see pkg/fizhi) |
452 |
|
|
C/\ | | | | |-CPL_WRITE_PICKUP :: Write Coupling-Interface pickups |
453 |
|
|
C/\ | | | | |-MYPACKAGE_WRITE_PICKUP :: Write pkg/mypackage pickups |
454 |
|
|
C/\ | | | | |
455 |
|
|
C/\ | | | |-WRITE_PICKUP :: Write main model pickup files. |
456 |
|
|
C/\ | | | |
457 |
|
|
C/\ | | |-AUTODIFF_INADMODE_SET :: Set/reset some adjoint flags |
458 |
jmc |
1.2 |
C | | |
459 |
adcroft |
1.1 |
C<===|=| ************************** |
460 |
|
|
C<===|=| END MAIN TIMESTEPPING LOOP |
461 |
|
|
C<===|=| ************************** |
462 |
jmc |
1.2 |
C | | |
463 |
jmc |
1.3 |
C | |-COST_AVERAGESFIELDS :: Time-averaged Cost function terms (see pkg/cost) |
464 |
|
|
C | |-PROFILES_INLOOP :: ( see pkg/profiles ) |
465 |
|
|
C | |-COST_FINAL :: Cost function package (see pkg/cost) |
466 |
jmc |
1.2 |
C | |
467 |
jmc |
1.3 |
C |-CTRL_PACK :: Control vector support package (see pkg/ctrl) |
468 |
adcroft |
1.1 |
C | |
469 |
jmc |
1.3 |
C |-GRDCHK_MAIN :: Gradient check package (see pkg/grdchk) |
470 |
adcroft |
1.1 |
C | |
471 |
jmc |
1.2 |
C |-TIMER_PRINTALL :: Computational timing summary |
472 |
adcroft |
1.1 |
C | |
473 |
jmc |
1.2 |
C |-COMM_STATS :: Summarise inter-proc and inter-thread communication |
474 |
jmc |
1.3 |
C | :: events. |