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C |
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C Invocation from WRAPPER level... |
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C |
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C | |
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C |-THE_MODEL_MAIN :: Primary driver for the MITgcm algorithm |
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C | :: Called from WRAPPER level numerical |
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C | :: code invocation routine. On entry |
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C | :: to THE_MODEL_MAIN separate thread and |
| 9 |
C | :: separate processes will have been established. |
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C | :: Each thread and process will have a unique ID |
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C | :: but as yet it will not be associated with a |
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C | :: specific region in decomposed discrete space. |
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C | |
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C |-INITIALISE_FIXED :: Set fixed model arrays such as topography, |
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C | | :: grid, solver matrices etc.. |
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C | | |
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C | |-INI_PARMS :: Routine to set kernel model parameters. |
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C | | :: Kernel parameters are read from file "data" |
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C | | :: in directory in which code executes. |
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C | | |
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C | |-PACKAGES_BOOT :: Start up the optional package environment. |
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C | | :: Runtime selection of active packages. |
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C | |-PACKAGES_READPARMS :: read each package input parameter file |
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C | | |- ${PKG}_READPARMS |
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C | | |
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C | |-SET_PARMS :: Finalise model parameter setting (if fct of pkg usage) |
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C | | |
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C | |-INI_MODEL_IO :: Initialise Input/Output setting |
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C | | |-MNC_INIT :: Initialise MITgcm NetCDF interface (MNC)(see pkg/mnc) |
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C | | |-MNC_CW_INIT :: Initialise MNC grid and variable types (see pkg/mnc) |
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C | | |-MON_INIT :: Initialises monitor package ( see pkg/monitor ) |
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C | | |
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C | |-INI_GRID :: Control grid array (vert. and horiz.) initialisation. |
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C | | | :: Grid arrays are held and described in GRID.h. |
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C | | |-LOAD_GRID_SPACING :: Load grid spacing (vector) from files |
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C | | |-INI_VERTICAL_GRID :: Set up vertical grid and coordinate |
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C | | |-INI_CARTESIAN_GRID :: Cartesian horiz. grid initialisation |
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C | | | :: (calculate grid from kernel parameters). |
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C | | |-INI_SPHERICAL_POLAR_GRID :: Spherical polar horiz. grid setting |
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C | | | :: (calculate grid from kernel parameters). |
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C | | |-INI_CURVILINEAR_GRID :: General orthogonal, structured horiz. grid |
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C | | | :: initialisation; input from raw grid files |
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C | | | :: (LONC.bin, LATC.bin, DXF.bin, ... ) or per |
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C | | | :: face file: horizGridFile(.faceXXX.bin) |
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C | | |-INI_CYLINDER_GRID :: Cylindrical horiz. grid setting |
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C | | |
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C | |-LOAD_REF_FILES :: Read-in reference vertical profiles (T,S,Rho) |
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C | |-INI_EOS :: Initialise Equation Of State (EOS) coefficients |
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C | |-SET_REF_STATE :: Set reference pressure/geopotential, reference |
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C | | :: stratification (for implicit IGW), vertical |
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C | | :: velocity scaling factor and anelastic ref. density |
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C | |-SET_GRID_FACTORS :: Set grid factors (fct of k) for deep-atmosphere |
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C | | |
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C | |-INI_DEPTHS :: Read (from "bathyFile") or set bathymetry/orography. |
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C | |-INI_MASKS_ETC :: Derive horizontal and vertical cell fractions and |
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C | | :: land masking for solid-fluid boundaries. |
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C | | |
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C | |-PACKAGES_INIT_FIXED :: do all packages fixed-initialisation setting |
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C | | |- ${PKG}_INIT_FIXED |
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C | | |
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C | |-INI_GLOBAL_DOMAIN :: Initialise domain related (global) quantities. |
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C | |-INI_LINEAR_PHISURF :: Set ref. surface Bo_surf |
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C | | |
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C | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane, |
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C | | :: sphere options are coded. |
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C | |-INI_CG2D :: 2D conjugate grad solver initialisation. |
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C | |-INI_CG3D :: 3D conjugate grad solver initialisation. |
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C | | |
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C | |-CONFIG_SUMMARY :: Provide synopsis of kernel setup. Includes |
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C | | :: annotated table of kernel parameter settings. |
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C | | |
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C | |-PACKAGES_CHECK :: call each package configuration checking S/R |
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C | | |- ${PKG}_CHECK |
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C | | |
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C | |-CONFIG_CHECK :: Check config and parameter consistency. |
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C | | |
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C | |-WRITE_GRID :: write grid fields to output files |
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C | |-CPL_EXCH_CONFIGS :: exchange config with coupler-interface |
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C | |
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C |-CTRL_UNPACK :: Control vector support package. see pkg/ctrl |
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C |-COST_DEPENDENT_INIT :: ( see pkg/cost ) |
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C | |
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C |-ADTHE_MAIN_LOOP :: Derivative evaluating form of main time stepping loop |
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C ! :: Automatically generated by TAMC/TAF. |
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C | |
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C |-THE_MAIN_LOOP :: Main timestepping loop routine. |
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C | | |
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C | |-INITIALISE_VARIA :: Set the initial conditions for time evolving fields |
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C | | | |
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C #ifdef ALLOW_AUTODIFF |
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C | | |-INI_DEPTHS \ |
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C | | |-CTRL_DEPTH_INI \ |
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C | | |-UPDATE_MASKS_ETC } ALLOW_DEPTH_CONTROL case |
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C | | |-UPDATE_CG2D / |
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C #endif |
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C | | |-INI_NLFS_VARS :: Initialise all Non-Lin Free-Surf arrays (SURFACE.h) |
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C | | |-INI_DYNVARS :: Initialise to zero all DYNVARS.h arrays |
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C | | |-INI_NH_VARS :: Initialise to zero all NH_VARS.h arrays |
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C | | | |
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C | | |-INI_FIELDS :: Control initialising model fields to non-zero |
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C | | | |-INI_VEL :: Initialize 3D flow field. |
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C | | | |-INI_THETA :: Set model initial temperature field. |
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C | | | |-INI_SALT :: Set model initial salinity field. |
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C | | | |-INI_PSURF :: Set model initial free-surface height/pressure. |
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C | | | |-READ_PICKUP :: Read in main model pickup files to restart a run. |
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C | | | |
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C | | |-INI_MIXING :: Initialise diapycnal diffusivity. |
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C | | | |
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C | | |-INI_FORCING :: Set model initial forcing fields, either |
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C | | | | :: set in-line or from file as shown here: |
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C | | | |-READ_FLD_XY_RS(zonalWindFile) |
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C | | | |-READ_FLD_XY_RS(meridWindFile) |
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C | | | |-READ_FLD_XY_RS(surfQnetFile) |
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C | | | |-READ_FLD_XY_RS(EmPmRfile) |
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C | | | |-READ_FLD_XY_RS(thetaClimFile) |
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C | | | |-READ_FLD_XY_RS(saltClimFile) |
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C | | | |-READ_FLD_XY_RS(surfQswFile) |
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C | | | |
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C | | |-AUTODIFF_INIT_VARIA :: (see pkg/autodiff ) |
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C | | | |
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C | | |-PACKAGES_INIT_VARIABLES :: Does initialisation of time evolving |
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C | | | | ${PKG}_INIT_VARIA :: package data. |
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C | | | |
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C | | |-COST_INIT_VARIA :: ( see pkg/cost ) |
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C | | |-CONVECTIVE_ADJUSTMENT_INI :: Apply conv. adjustment to initial state |
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C | | | |
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C | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord) |
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C | | |-UPDATE_R_STAR :: Update the level thickness fraction (r* coord). |
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C | | |-UPDATE_SIGMA :: Update the level thickness fraction (sigma-coord). |
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C | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
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C | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
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C | | | |
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C | | |-UPDATE_CG2D :: Update 2D conjugate grad. for Free-Surf. |
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C | | | |
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C | | |-INTEGR_CONTINUITY :: Integrate the continuity Equation |
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C | | | |-INTEGRATE_FOR_W :: Integrate for vertical velocity |
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C | | | |-OBCS_APPLY_W :: Open boundary package (see pkg/obcs). |
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C | | | |-UPDATE_ETAH :: Update Surface height/pressure |
| 139 |
C | | | |
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C | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord) |
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C | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
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C | | | |
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C | | |-STATE_SUMMARY :: Summarise model prognostic variables. |
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C | | | |
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C | | |-MONITOR :: Monitor state (see pkg/monitor) |
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C | | | |
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C | | |-DO_STATEVARS_TAVE :: Time averaging package ( see pkg/timeave ). |
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C | | | |-TIMEAVE_STATVARS :: Accumulate main model state variables |
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C | | | |-PTRACERS_TIMEAVE :: Accumulate passive tracers variables |
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C | | | |
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C | | |-DO_THE_MODEL_IO :: Controlling routine for IO |
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C | | | |-WRITE_STATE :: Write model state variables. |
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C | | | |-TIMEAVE_STATV_WRITE :: Write Time averaged output (see pkg/timeave) |
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C | | | |-FIZHI_WRITE_STATE :: Write Fizhi pkg output (see pkg/fizhi) |
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C | | | |-AIM_WRITE_TAVE :: Write AIM pkg output (see pkg/aim_v23) |
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C | | | |-LAND_OUTPUT :: Write Land pkg output (see pkg/land) |
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C | | | |-OBCS_OUTPUT :: Write OBCS pkg output (see pkg/obcs) |
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C | | | |-GMREDI_OUTPUT :: Write GM-Redi pkg output (see pkg/gmredi) |
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C | | | |-KPP_OUTPUT :: Write KPP pkg output (see pkg/kpp) |
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C | | | |-PP81_OUTPUT :: Write PP81 pkg output (see pkg/pp81) |
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C | | | |-KL10_OUTPUT :: Write KL10 pkg output (see pkg/kl10) |
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C | | | |-MY82_OUTPUT :: Write MY82 pkg output (see pkg/my82) |
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C | | | |-OPPS_OUTPUT :: Write OPPS pkg output (see pkg/opps) |
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C | | | |-GGL90_OUTPUT :: Write GGL90 pkg output (see pkg/ggl90) |
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C | | | |-SBO_CALC :: Compute SBO diagnostics (see pkg/sbo) |
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C | | | |-SBO_OUTPUT :: Write SBO pkg output (see pkg/sbo) |
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C | | | |-SEAICE_OUTPUT :: Write SeaIce pkg output (see pkg/seaice) |
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C | | | |-SHELFICE_OUTPUT :: Write ShelfIce pkg output (see pkg/shelfice) |
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C | | | |-BULKF_OUTPUT :: Write Bulk-Force output (see pkg/bulK_force) |
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C | | | |-THSICE_OUTPUT :: Write ThSIce pkg output (see pkg/thsice) |
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C | | | |-PTRACERS_OUTPUT :: Write pTracers pkg output (see pkg/ptracers) |
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C | | | |-MATRIX_OUTPUT :: Write Matrix pkg output (see pkg/matrix) |
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C | | | |-GCHEM_OUTPUT :: Write Geochemistry pkg output (see pkg/gchem) |
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C | | | |-CPL_OUTPUT :: Write Coupler-Interface output (see |
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C | | | | :: pkg/atm_compon_interf, pkg/ocn_compon_interf) |
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C | | | |-LAYERS_CALC :: Calculate layers diagnostics (see pkg/layers) |
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C | | | |-LAYERS_OUTPUT :: Write Layers pkg output (see pkg/layers) |
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C | | | |-DIAGNOSTICS_WRITE :: Write pkg/diagnostics output |
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C | | | |
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C====|>| **************************** |
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C====|>| BEGIN MAIN TIMESTEPPING LOOP |
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C====|>| **************************** |
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C | |-COST_AVERAGESFIELDS :: time-averaged Cost function terms (see pkg/cost) |
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C | |-PROFILES_INLOOP :: ( see pkg/profiles ) |
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C | / |
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C | |-MAIN_DO_LOOP :: Open-AD case: Main timestepping loop routine |
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C | \ otherwise: just call FORWARD_STEP |
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C | | |
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C/\ | |-FORWARD_STEP :: Step forward a time-step ( AT LAST !!! ) |
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C/\ | | | |
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C/\ | | |-AUTODIFF_INADMODE_UNSET :: Set/reset some adjoint flags |
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C/\ | | |-RESET_NLFS_VARS :: Reset some Non-Lin Free-Surf vars (Adjoint) |
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C/\ | | |-UPDATE_R_STAR :: Reset r-star factor variables (Adjoint) |
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C/\ | | |-UPDATE_SURF_DR :: Reset NLFS surface thickness vars (Adjoint) |
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C/\ | | | |
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C/\ | | |-PTRACERS_SWITCH_ONOFF :: Set/reset pTracers time-stepping switch |
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C/\ | | |-DIAGNOSTICS_SWITCH_ONOFF :: Activate/de-activate diagnostics |
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C/\ | | |-DO_STATEVARS_DIAGS ( 0 ) :: fill-up state variable diagnostics |
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C/\ | | | |
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C/\ | | |-NEST_CHILD_SETMEMO :: Nesting interface |
| 201 |
C/\ | | |-NEST_PARENT_IO_1 :: Nesting interface |
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C/\ | | | |
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C/\ | | |-LOAD_FIELDS_DRIVER :: Control loading of input fields from files |
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C/\ | | | |
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C/\ | | |-BULKF_FORCING :: Calculate surface forcing (see pkg/bulk_force) |
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C/\ | | |-CHEAPAML :: Cheap AML driver ( see pkg/cheapaml ) |
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C/\ | | |-CTRL_MAP_FORCING :: Control vector support package. (see pkg/ctrl) |
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C/\ | | |-DUMMY_IN_STEPPING :: Autodiff package ( pkg/autodiff ). |
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C/\ | | | |
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C/\ | | |-CPL_EXPORT_MY_DATA :: Send coupling fields to coupler |
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C/\ | | |-CPL_IMPORT_EXTERNAL_DATA :: Receive coupling fields from coupler |
| 212 |
C/\ | | | |
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C/\ | | |-OASIS_PUT :: Oasis coupler interface |
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C/\ | | |-OASIS_GET :: Oasis coupler interface |
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C/\ | | | |
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C/\ | | |-EBM_DRIVER :: Calculate EBM type atmospheric forcing (see pkg/ebm) |
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C/\ | | | |
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C/\ | | |-DO_ATMOSPHERIC_PHYS :: Atmospheric physics computation |
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C/\ | | | | |
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C/\ | | | |-UPDATE_OCEAN_EXPORTS :: ( see pkg/fizhi ) |
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C/\ | | | |-UPDATE_EARTH_EXPORTS :: ( see pkg/fizhi ) |
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C/\ | | | |-UPDATE_CHEMISTRY_EXPORTS :: ( see pkg/fizhi ) |
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C/\ | | | |-FIZHI_WRAPPER :: ( see pkg/fizhi ) |
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C/\ | | | |-STEP_FIZHI_FG :: ( see pkg/fizhi ) |
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C/\ | | | |-FIZHI_UPDATE_TIME :: ( see pkg/fizhi ) |
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C/\ | | | | |
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C/\ | | | |-ATM_PHYS_DRIVER :: ( see pkg/atm_phys ) |
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C/\ | | | | |
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C/\ | | | |-AIM_DO_PHYSICS :: ( see pkg/aim_v23 ) |
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C/\ | | | |
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C/\ | | |-DO_OCEANIC_PHYS :: Oceanic (& seaice) physics computation |
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C/\ | | | | |
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C/\ | | | |-OBCS_CALC :: Open boundary. package (see pkg/obcs). |
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C/\ | | | | |
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C/\ | | | |-FRAZIL_CALC_RHS :: Compute FRAZIL tendencies ( see pkg/frazil ) |
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C/\ | | | |-THSICE_MAIN :: Thermodynamic sea-ice driver (see pkg/thsice) |
| 237 |
C/\ | | | |-SEAICE_MODEL :: Sea-ice model driver (see pkg/seaice ) |
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C/\ | | | |-SEAICE_COST_SENSI :: Sea-ice cost-function (see pkg/seaice ) |
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C/\ | | | |-SHELFICE_THERMODYNAMICS :: Compute ShelfIce thermo (pkg/shelfice) |
| 240 |
C/\ | | | |-ICEFRONT_THERMODYNAMICS :: Compute IceFront thermo (pkg/icefront) |
| 241 |
C/\ | | | | |
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C/\ | | | |-SALT_PLUME_DO_EXCH :: (see pkg/salt_plume ) |
| 243 |
C/\ | | | |-FREEZE_SURFACE :: Prevent SST to fall below TFreeze |
| 244 |
C/\ | | | |-OCN_APPLY_IMPORT :: Apply imported fields from coupler |
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C/\ | | | |-EXTERNAL_FORCING_SURF:: Compute appropriately dimensioned |
| 246 |
C/\ | | | | :: surface forcing terms. |
| 247 |
C/\ | | | |-FIND_RHO_2D @ p(k) :: Calculate [rho(T,S,p)-Rho_0] of a slice |
| 248 |
C/\ | | | |-FIND_RHO_2D @ p(k-1) :: Calculate [rho(T,S,p)-Rho_0] of a slice |
| 249 |
C/\ | | | |-GRAD_SIGMA :: Calculate isoneutral gradients |
| 250 |
C/\ | | | |-CALC_IVDC :: Set Implicit Vertical Diffusivity for Convection |
| 251 |
C/\ | | | |-CALC_OCE_MXLAYER :: Diagnose Oceanic Mixed Layer depth |
| 252 |
C/\ | | | | |
| 253 |
C/\ | | | |-SALT_PLUME_CALC_DEPTH :: (see pkg/salt_plume ) |
| 254 |
C/\ | | | |-SALT_PLUME_VOLFRAC :: (see pkg/salt_plume ) |
| 255 |
C/\ | | | |-SALT_PLUME_APPLY (Temp) :: (see pkg/salt_plume ) |
| 256 |
C/\ | | | |-SALT_PLUME_APPLY (Salt) :: (see pkg/salt_plume ) |
| 257 |
C/\ | | | |-SALT_PLUME_FORCING_SURF :: (see pkg/salt_plume ) |
| 258 |
C/\ | | | |-KPP_CALC :: Compute KPP vertical mixing ( see pkg/kpp ) |
| 259 |
C/\ | | | |-PP81_CALC :: Compute PP81 vertical mixing ( see pkg/pp81 ) |
| 260 |
C/\ | | | |-KL10_CALC :: Compute KL10 vertical mixing ( see pkg/kl10 ) |
| 261 |
C/\ | | | |-MY82_CALC :: Compute MY82 vertical mixing ( see pkg/kl10 ) |
| 262 |
C/\ | | | |-GGL90_CALC :: Compute GGL90 vertical mixing (see pkg/ggl10) |
| 263 |
C/\ | | | |-GMREDI_CALC_TENSOR :: Compute GM-Redi tensor ( see pkg/gmredi ) |
| 264 |
C/\ | | | |-DWNSLP_CALC_FLOW :: Compute Down-Slope flow (see pkg/down_slope) |
| 265 |
C/\ | | | |-BBL_CALC_RHS :: Compute BBL tendencies ( see pkg/bbl ) |
| 266 |
C/\ | | | |-MYPACKAGE_CALC_RHS :: Compute mypackage tendencies (pkg/mypackage) |
| 267 |
C/\ | | | | |
| 268 |
C/\ | | | |-GMREDI_DO_EXCH :: ( see pkg/gmredi ) |
| 269 |
C/\ | | | |-KPP_DO_EXCH :: ( see pkg/kpp ) |
| 270 |
C/\ | | | |-DIAGS_RHO_G :: Compute some density related diagnostics |
| 271 |
C/\ | | | |-DIAGS_OCEANIC_SURF_FLUX :: Diagnose oceanic surface fluxes |
| 272 |
C/\ | | | |-SALT_PLUME_DIAGNOSTICS_FILL :: (see pkg/salt_plume ) |
| 273 |
C/\ | | | |-ECCO_PHYS :: ( see pkg/ecco ) |
| 274 |
C/\ | | | |
| 275 |
C/\ | | |-STREAMICE_SOLO_TIMESTEP :: ( see pkg/streamice ) |
| 276 |
C/\ | | | |
| 277 |
C/\ | | |-GCHEM_CALC_TENDENCY :: geochemistry driver routine (see pkg/gchem) |
| 278 |
C/\ | | | |
| 279 |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep ) |
| 280 |
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep ) |
| 281 |
C/\ | | | |
| 282 |
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer equations driver. |
| 283 |
C/\ | | | | (synchronous time-stepping case) |
| 284 |
C/\ | | | |-CALC_WSURF_TR :: Compute T & S Linear-Free-Surf correction |
| 285 |
C/\ | | | |-PTRACERS_CALC_WSURF_TR :: Compute Tracers Linear-Free-Surf correct. |
| 286 |
C/\ | | | | |
| 287 |
C/\ | | | |-GMREDI_RESIDUAL_FLOW :: Get the flow field used to advect tracers |
| 288 |
C/\ | | | | |
| 289 |
C/\ | | | |-TEMP_INTEGRATE :: Step forward Prognostic Eq for Temperature. |
| 290 |
C/\ | | | | | |
| 291 |
C/\ | | | | |-ADAMS_BASHFORTH3 :: Extrapolate tracer forward in time (AB-3) |
| 292 |
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tracer forward in time (AB-2) |
| 293 |
C/\ | | | | |-CALC_3D_DIFFUSIVITY :: set vertical diffusivity |
| 294 |
C/\ | | | | | |
| 295 |
C/\ | | | | |-GAD_SOM_ADVECT :: Second Order Moment (SOM) advection |
| 296 |
C/\ | | | | |-GAD_ADVECTION :: Generalised advection driver (multi-dim |
| 297 |
C/\ | | | | | advection case) (see pkg/gad). |
| 298 |
C/\ | | | | |-CALC_ADV_FLOW :: set 3-D flow field to advect tracer |
| 299 |
C/\ | | | | |-APPLY_FORCING_T :: Problem specific forcing for temperature. |
| 300 |
C/\ | | | | |-GAD_CALC_RHS :: Calculate Advection-Diffusion tendency terms |
| 301 |
C/\ | | | | | |
| 302 |
C/\ | | | | |-ADAMS_BASHFORTH3 :: Extrapolate tendency forward in time (AB-3) |
| 303 |
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendency forward in time (AB-2) |
| 304 |
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gt for free-surface height. |
| 305 |
C/\ | | | | |-DWNSLP_APPLY :: Add pkg/down_slope tendency |
| 306 |
C/\ | | | | | |
| 307 |
C/\ | | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
| 308 |
C/\ | | | | | |
| 309 |
C/\ | | | | |-GAD_IMPLICIT_R :: Solve vertical implicit Advect-Diffus. eqn. |
| 310 |
C/\ | | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
| 311 |
C/\ | | | | |-CYCLE_AB_TRACER :: Cycle time-stepping arrays for tracer field |
| 312 |
C/\ | | | | |-CYCLE_TRACER :: Cycle time-stepping arrays for tracer field |
| 313 |
C/\ | | | | |
| 314 |
C/\ | | | |-SALT_INTEGRATE :: Step forward Prognostic Eq for Salinity. |
| 315 |
C/\ | | | | | same sequence of calls as in TEMP_INTEGRATE |
| 316 |
C/\ | | | | |
| 317 |
C/\ | | | |-PTRACERS_INTEGRATE :: Integrate other tracer(s) (see pkg/ptracers). |
| 318 |
C/\ | | | | | same sequence of calls as in TEMP_INTEGRATE |
| 319 |
C/\ | | | | |-OBCS_APPLY_PTRACER :: Open boundary package for pTracers |
| 320 |
C/\ | | | | |
| 321 |
C/\ | | | |-OBCS_APPLY_TS :: Open boundary package (see pkg/obcs ). |
| 322 |
C/\ | | | |
| 323 |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep ) |
| 324 |
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep ) |
| 325 |
C/\ | | | |
| 326 |
C/\ | | |-DO_STAGGER_FIELDS_EXCHANGES :: Update overlap regions of arrays |
| 327 |
C/\ | | | Theta & Salt (implicit IGW case) |
| 328 |
C/\ | | | |
| 329 |
C/\ | | |-DYNAMICS :: Momentum equations driver. |
| 330 |
C/\ | | | | |
| 331 |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Calculate the gradient of the surface |
| 332 |
C/\ | | | | Potential anomaly. |
| 333 |
C/\ | | | |-CALC_VISCOSITY :: Calculate net vertical viscosity |
| 334 |
C/\ | | | |-MOM_CALC_3D_STRAIN :: Calculates the strain tensor of 3D flow field |
| 335 |
C/\ | | | |-OBCS_COPY_UV_N :: for Stevens bndary Conditions (see pkg/obcs) |
| 336 |
C/\ | | | | |
| 337 |
C/\ | | | |-CALC_PHI_HYD :: Integrate the hydrostatic relation. |
| 338 |
C/\ | | | |-MOM_FLUXFORM :: Flux Form momentum eqn. (pkg/mom_fluxform) |
| 339 |
C/\ | | | |-MOM_VECINV :: Vector Invariant momentum eqn (pkg/mom_vecinv) |
| 340 |
C/\ | | | |-MOM_CALC_SMAG_3D :: Calculate Smagorinsky 3D (harmonic) viscosities |
| 341 |
C/\ | | | |-MOM_UV_SMAG_3D :: Calculate U,V mom. tendency due to Smag 3D Visc |
| 342 |
C/\ | | | |-TIMESTEP :: Step horizontal momentum fields forward in time |
| 343 |
C/\ | | | | |
| 344 |
C/\ | | | |-MOM_U_IMPLICIT_R :: Solve implicitly vertical Adv-Diffus equation. |
| 345 |
C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
| 346 |
C/\ | | | |-OBCS_SAVE_UV_N :: for Stevens bndary Conditions (see pkg/obcs) |
| 347 |
C/\ | | | |-OBCS_APPLY_UV :: Apply Open bndary Conditions to provisional U,V |
| 348 |
C/\ | | | |-IMPLDIFF :: (CD-Scheme) Solve vertical impl. diffus. eqn |
| 349 |
C/\ | | | | |
| 350 |
C/\ | | | |-CALC_GW :: Vert. momentum tendency terms (Non-Hydrostatic) |
| 351 |
C/\ | | | | |-MOM_W_SMAG_3D :: Calculate W mom. tendency due to Smag 3D Visc |
| 352 |
C/\ | | | |-TIMESTEP_WVEL :: Step vert mom forward in time (Non-Hydrostatic) |
| 353 |
C/\ | | | |
| 354 |
C/\ | | |-MNC_UPDATE_TIME :: Update MNC time record (see pkg/mnc) |
| 355 |
C/\ | | | |
| 356 |
C/\ | | |-UPDATE_R_STAR :: Update the level thickness fraction (r* coord). |
| 357 |
C/\ | | |-UPDATE_SIGMA :: Update the level thickness fraction (sigma-coord). |
| 358 |
C/\ | | |-UPDATE_R_STAR :: Update the level thickness fraction. |
| 359 |
C/\ | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
| 360 |
C/\ | | |-UPDATE_CG2D :: Update 2D conjugate grad. for Free-Surf. |
| 361 |
C/\ | | | |
| 362 |
C/\ | | |-SHAP_FILT_APPLY_UV :: Apply Shapiro Filter to provisional velocity |
| 363 |
C/\ | | |-ZONAL_FILT_APPLY_UV :: Apply Zonal Filter to provisional velocity |
| 364 |
C/\ | | | |
| 365 |
C/\ | | |-SOLVE_FOR_PRESSURE :: Find surface pressure. |
| 366 |
C/\ | | | |-CALC_DIV_GHAT :: Form the RHS of the surface pressure eqn. |
| 367 |
C/\ | | | |-CG2D :: Two-dim pre-con. conjugate-gradient. |
| 368 |
C/\ | | | |-PRE_CG3D :: Finish to set the RHS of the 3-D pressure eqn. |
| 369 |
C/\ | | | |-CG3D :: Three-dim pre-con. conjugate-gradient solver. |
| 370 |
C/\ | | | |-POST_CG3D :: finalise solution of NH and Free-Surf pressure |
| 371 |
C/\ | | | |
| 372 |
C/\ | | |-MOMENTUM_CORRECTION_STEP :: Finalise momentum stepping |
| 373 |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure |
| 374 |
C/\ | | | |-CORRECTION_STEP :: Pressure correction to momentum |
| 375 |
C/\ | | | |-OBCS_APPLY_UV :: Open boundary package (see pkg/obcs). |
| 376 |
C/\ | | | |-SHAP_FILT_APPLY_UV :: Apply Shapiro Filter to latest velocity |
| 377 |
C/\ | | | |-ZONAL_FILT_APPLY_UV :: Apply Zonal Filter to latest velocity |
| 378 |
C/\ | | | |
| 379 |
C/\ | | |-INTEGR_CONTINUITY :: Integrate continuity equation (see above) |
| 380 |
C/\ | | | |
| 381 |
C/\ | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord) |
| 382 |
C/\ | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
| 383 |
C/\ | | | |
| 384 |
C/\ | | |-DO_STAGGER_FIELDS_EXCHANGES :: Update overlap regions of arrays |
| 385 |
C/\ | | | uVel,vVel & wVel (stagger-time-step case) |
| 386 |
C/\ | | | |
| 387 |
C/\ | | |-DO_STATEVARS_DIAGS ( 1 ) :: fill-up state variable diagnostics |
| 388 |
C/\ | | | |
| 389 |
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer Eq. driver (see above). |
| 390 |
C/\ | | | (staggered time-stepping case) |
| 391 |
C/\ | | | |
| 392 |
C/\ | | |-TRACERS_CORRECTION_STEP :: Finalise tracer stepping: |
| 393 |
C/\ | | | | :: apply filter, conv.adjustment |
| 394 |
C/\ | | | |-TRACERS_IIGW_CORRECTION :: apply Implicit IGW adjustment to T & S |
| 395 |
C/\ | | | |-SHAP_FILT_APPLY_TS :: Apply Shapiro Filter to latest T & S |
| 396 |
C/\ | | | |-ZONAL_FILT_APPLY_TS :: Apply Zonal Filter to latest T & S |
| 397 |
C/\ | | | |-PTRACERS_ZONAL_FILT_APPLY :: Apply Zonal Filter to pTracers |
| 398 |
C/\ | | | |-SALT_FILL :: Fill up negative Salt |
| 399 |
C/\ | | | |-OPPS_INTERFACE :: ( see pkg/opps ) |
| 400 |
C/\ | | | |-CONVECTIVE_ADJUSTMENT :: Apply convective adjustment |
| 401 |
C/\ | | | |-MATRIX_STORE_TENDENCY_IMP :: ( see pkg/matrix ) |
| 402 |
C/\ | | | |
| 403 |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep ) |
| 404 |
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep ) |
| 405 |
C/\ | | | |
| 406 |
C/\ | | |-GCHEM_FORCING_SEP :: Tracer forcing for gchem pkg (if tracer |
| 407 |
C/\ | | | :: dependent tendencies calculated separately) |
| 408 |
C/\ | | | |
| 409 |
C/\ | | |-DO_FIELDS_BLOCKING_EXCHANGES :: Sync up overlap regions. |
| 410 |
C/\ | | | |
| 411 |
C/\ | | |-DO_STATEVARS_DIAGS ( 2 ) :: fill-up state variable diagnostics |
| 412 |
C/\ | | | |
| 413 |
C/\ | | |-GRIDALT_UPDATE :: ( see pkg/gridalt ) |
| 414 |
C/\ | | |-STEP_FIZHI_CORR :: ( see pkg/fizhi ) |
| 415 |
C/\ | | | |
| 416 |
C/\ | | |-FLT_MAIN :: Step forward Floats (see pkg/flt) |
| 417 |
C/\ | | | |
| 418 |
C/\ | | |-DO_STATEVARS_TAVE :: Time averaging package (see above) |
| 419 |
C/\ | | | |
| 420 |
C/\ | | |-NEST_PARENT_IO_2 :: Nesting interface |
| 421 |
C/\ | | |-NEST_CHILD_TRANSP :: Nesting interface |
| 422 |
C/\ | | | |
| 423 |
C/\ | | |-MONITOR :: Monitor package (pkg/monitor). |
| 424 |
C/\ | | | |
| 425 |
C/\ | | |-COST_TILE :: ( see pkg/cost ) |
| 426 |
C/\ | | | |
| 427 |
C/\ | | |-DO_THE_MODEL_IO :: Controlling routine for IO (see above) |
| 428 |
C/\ | | | |
| 429 |
C/\ | | |-PTRACERS_RESET :: Re-initialize PTRACERS ( see pkg/ptracers ) |
| 430 |
C/\ | | | |
| 431 |
C/\ | | |-DO_WRITE_PICKUP :: Controlling routine for writing files to restart |
| 432 |
C/\ | | | |-PACKAGES_WRITE_PICKUP :: Write pickup files for each package |
| 433 |
C/\ | | | | | :: which needs it to restart |
| 434 |
C/\ | | | | |-GAD_WRITE_PICKUP :: Write Generic AdvDiff pickups for SOM |
| 435 |
C/\ | | | | | :: advection scheme (pkg/generic_advdiff) |
| 436 |
C/\ | | | | |-CD_CODE_WRITE_PICKUP :: Write CD-code pickups (see pkg/cd_code) |
| 437 |
C/\ | | | | |-OBCS_WRITE_PICKUP :: Write OBCS pickups (see pkg/obcs) |
| 438 |
C/\ | | | | |-GGL90_WRITE_PICKUP :: Write GGL90 pickups (see pkg/ggl90) |
| 439 |
C/\ | | | | |-BBL_WRITE_PICKUP :: Write BBL pickups (see pkg/bbl) |
| 440 |
C/\ | | | | |-CHEAPAML_WRITE_PICKUP :: Write CheapAML pickups (pkg/cheapaml) |
| 441 |
C/\ | | | | |-FLT_WRITE_PICKUP :: Write Floats pickups (see pkg/flt) |
| 442 |
C/\ | | | | |-PTRACERS_WRITE_PICKUP :: Write pTracers pickups (pkg/ptracers) |
| 443 |
C/\ | | | | |-GCHEM_WRITE_PICKUP :: Write Geo-Chem pickups (see pkg/gchem) |
| 444 |
C/\ | | | | |-SEAICE_WRITE_PICKUP :: Write SeaIce pickups (see pkg/seaice) |
| 445 |
C/\ | | | | |-STREAMICE_WRITE_PICKUP :: Write StreamIce pickups (pkg/streamice) |
| 446 |
C/\ | | | | |-THSICE_WRITE_PICKUP :: Write ThSIce pickups (see pkg/thsice) |
| 447 |
C/\ | | | | |-LAND_WRITE_PICKUP :: Write Land pickups (see pkg/land) |
| 448 |
C/\ | | | | |-ATM_PHYS_WRITE_PICKUP :: Write Atm-Phys pickups (pkg/atm_phys) |
| 449 |
C/\ | | | | |-FIZHI_WRITE_PICKUP :: Write Fizhi pickups (see pkg/fizhi) |
| 450 |
C/\ | | | | |-FIZHI_WRITE_VEGTILES :: Write Fizhi VegTiles (see pkg/fizhi) |
| 451 |
C/\ | | | | |-FIZHI_WRITE_DATETIME :: Write Fizhi DateTime (see pkg/fizhi) |
| 452 |
C/\ | | | | |-CPL_WRITE_PICKUP :: Write Coupling-Interface pickups |
| 453 |
C/\ | | | | |-MYPACKAGE_WRITE_PICKUP :: Write pkg/mypackage pickups |
| 454 |
C/\ | | | | |
| 455 |
C/\ | | | |-WRITE_PICKUP :: Write main model pickup files. |
| 456 |
C/\ | | | |
| 457 |
C/\ | | |-AUTODIFF_INADMODE_SET :: Set/reset some adjoint flags |
| 458 |
C | | |
| 459 |
C<===|=| ************************** |
| 460 |
C<===|=| END MAIN TIMESTEPPING LOOP |
| 461 |
C<===|=| ************************** |
| 462 |
C | | |
| 463 |
C | |-COST_AVERAGESFIELDS :: Time-averaged Cost function terms (see pkg/cost) |
| 464 |
C | |-PROFILES_INLOOP :: ( see pkg/profiles ) |
| 465 |
C | |-COST_FINAL :: Cost function package (see pkg/cost) |
| 466 |
C | |
| 467 |
C |-CTRL_PACK :: Control vector support package (see pkg/ctrl) |
| 468 |
C | |
| 469 |
C |-GRDCHK_MAIN :: Gradient check package (see pkg/grdchk) |
| 470 |
C | |
| 471 |
C |-TIMER_PRINTALL :: Computational timing summary |
| 472 |
C | |
| 473 |
C |-COMM_STATS :: Summarise inter-proc and inter-thread communication |
| 474 |
C | :: events. |
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