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C |
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C Invocation from WRAPPER level... |
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C : |
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C : |
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C | |
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C |-THE_MODEL_MAIN :: Primary driver for the MITgcm algorithm |
| 7 |
C | :: Called from WRAPPER level numerical |
| 8 |
C | :: code innvocation routine. On entry |
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C | :: to THE_MODEL_MAIN separate thread and |
| 10 |
C | :: separate processes will have been established. |
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C | :: Each thread and process will have a unique ID |
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C | :: but as yet it will not be associated with a |
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C | :: specific region in decomposed discrete space. |
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C | |
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C |-INITIALISE_FIXED :: Set fixed model arrays such as topography, |
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C | | :: grid, solver matrices etc.. |
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C | | |
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C | |-INI_PARMS :: Routine to set kernel model parameters. |
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C | | :: By default kernel parameters are read from file |
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C | | :: "data" in directory in which code executes. |
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C | | |
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C | |-MON_INIT :: Initialises monitor pacakge ( see pkg/monitor ) |
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C | | |
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C | |-INI_GRID :: Control grid array (vert. and hori.) initialisation. |
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C | | | :: Grid arrays are held and described in GRID.h. |
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C | | | |
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C | | |-INI_VERTICAL_GRID :: Initialise vertical grid arrays. |
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C | | | |
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C | | |-INI_CARTESIAN_GRID :: Cartesian horiz. grid initialisation |
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C | | | :: (calculate grid from kernel parameters). |
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C | | | |
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C | | |-INI_SPHERICAL_POLAR_GRID :: Spherical polar horiz. grid |
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C | | | :: initialisation (calculate grid from |
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C | | | :: kernel parameters). |
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C | | | |
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C | | |-INI_CURVILINEAR_GRID :: General orthogonal, structured horiz. |
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C | | :: grid initialisations. ( input from raw |
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C | | :: grid files, LONC.bin, DXF.bin etc... ) |
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C | | |
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C | |-INI_DEPTHS :: Read (from "bathyFile") or set bathymetry/orgography. |
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C | | |
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C | |-INI_MASKS_ETC :: Derive horizontal and vertical cell fractions and |
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C | | :: land masking for solid-fluid boundaries. |
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C | | |
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C | |-INI_LINEAR_PHSURF :: Set ref. surface Bo_surf |
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C | | |
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C | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane, |
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C | | :: sphere optins are coded. |
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C | | |
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C | |-PACAKGES_BOOT :: Start up the optional package environment. |
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C | | :: Runtime selection of active packages. |
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C | | |
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C | |-PACKAGES_READPARMS :: Call active package internal parameter load. |
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C | | | |
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C | | |-GMREDI_READPARMS :: GM Package. see pkg/gmredi |
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C | | |-KPP_READPARMS :: KPP Package. see pkg/kpp |
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C | | |-SHAP_FILT_READPARMS :: Shapiro filter package. see pkg/shap_filt |
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C | | |-OBCS_READPARMS :: Open bndy package. see pkg/obcs |
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C | | |-AIM_READPARMS :: Intermediate Atmos. pacakage. see pkg/aim |
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C | | |-COST_READPARMS :: Cost function package. see pkg/cost |
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C | | |-CTRL_INIT :: Control vector support package. see pkg/ctrl |
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C | | |-OPTIM_READPARMS :: Optimisation support package. see pkg/ctrl |
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C | | |-GRDCHK_READPARMS :: Gradient check package. see pkg/grdchk |
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C | | |-ECCO_READPARMS :: ECCO Support Package. see pkg/ecco |
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C | | |
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C | |-PACKAGES_CHECK |
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C | | | |
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C | | |-KPP_CHECK :: KPP Package. pkg/kpp |
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C | | |-OBCS_CHECK :: Open bndy Pacakge. pkg/obcs |
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C | | |-GMREDI_CHECK :: GM Package. pkg/gmredi |
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C | | |
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C | |-PACKAGES_INIT_FIXED |
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C | | |-OBCS_INIT_FIXED :: Open bndy Package. see pkg/obcs |
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C | | |-FLT_INIT :: Floats Package. see pkg/flt |
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C | | |
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C | |-ZONAL_FILT_INIT :: FFT filter Package. see pkg/zonal_filt |
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C | | |
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C | |-INI_CG2D :: 2d con. grad solver initialisation. |
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C | | |
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C | |-INI_CG3D :: 3d con. grad solver initialisation. |
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C | | |
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C | |-CONFIG_SUMMARY :: Provide synopsis of kernel setup. |
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C | :: Includes annotated table of kernel |
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C | :: parameter settings. |
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C | |
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C |-CTRL_UNPACK :: Control vector support package. see pkg/ctrl |
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C | |
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C |-ADTHE_MAIN_LOOP :: Derivative evaluating form of main time stepping loop |
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C ! :: Auotmatically gerenrated by TAMC/TAF. |
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C | |
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C |-CTRL_PACK :: Control vector support package. see pkg/ctrl |
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C | |
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C |-GRDCHK_MAIN :: Gradient check package. see pkg/grdchk |
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C | |
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C |-THE_MAIN_LOOP :: Main timestepping loop routine. |
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C | | |
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C | |-INITIALISE_VARIA :: Set the initial conditions for time evolving |
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C | | | :: variables |
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C | | | |
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C | | |-INI_LINEAR_PHISURF :: Set ref. surface Bo_surf |
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C | | | |
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C | | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane, |
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C | | | :: sphere optins are coded. |
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C | | | |
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C | | |-INI_CG2D :: 2d con. grad solver initialisation. |
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C | | |-INI_CG3D :: 3d con. grad solver initialisation. |
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C | | |-INI_MIXING :: Initialise diapycnal diffusivity. |
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C | | |-INI_DYNVARS :: Initialise to zero all DYNVARS.h arrays (dynamical |
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C | | | :: fields). |
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C | | | |
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C | | |-INI_FIELDS :: Control initialising model fields to non-zero |
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C | | | |-INI_VEL :: Initialize 3D flow field. |
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C | | | |-INI_THETA :: Set model initial temperature field. |
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C | | | |-INI_SALT :: Set model initial salinity field. |
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C | | | |-INI_PSURF :: Set model initial free-surface height/pressure. |
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C | | | |
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C | | |-INI_TR1 :: Set initial tracer 1 distribution. |
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C | | | |
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C | | |-THE_CORRECTION_STEP :: Step forward to next time step. |
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C | | | | :: Here applied to move restart conditions |
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C | | | | :: (saved in mid timestep) to correct level in |
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C | | | | :: time (only used for pre-c35). |
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C | | | | |
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C | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure |
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C | | | |-CORRECTION_STEP :: Pressure correction to momentum |
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C | | | |-CYCLE_TRACER :: Move tracers forward in time. |
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C | | | |-OBCS_APPLY :: Open bndy package. see pkg/obcs |
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C | | | |-SHAP_FILT_APPLY :: Shapiro filter package. see pkg/shap_filt |
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C | | | |-ZONAL_FILT_APPLY :: FFT filter package. see pkg/zonal_filt |
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C | | | |-CONVECTIVE_ADJUSTMENT :: Control static instability mixing. |
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C | | | | |-FIND_RHO :: Find adjacent densities. |
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C | | | | |-CONVECT :: Mix static instability. |
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C | | | | |-TIMEAVE_CUMULATE :: Update convection statistics. |
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C | | | | |
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C | | | |-CALC_EXACT_ETA :: Change SSH to flow divergence. |
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C | | | |
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C | | |-CONVECTIVE_ADJUSTMENT_INI :: Control static instability mixing |
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C | | | | :: Extra time history interactions. |
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C | | | | |
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C | | | |-FIND_RHO :: Find adjacent densities. |
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C | | | |-CONVECT :: Mix static instability. |
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C | | | |-TIMEAVE_CUMULATE :: Update convection statistics. |
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C | | | |
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C | | |-PACKAGES_INIT_VARIABLES :: Does initialisation of time evolving |
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C | | | | :: package data. |
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C | | | | |
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C | | | |-GMREDI_INIT :: GM package. ( see pkg/gmredi ) |
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C | | | |-KPP_INIT :: KPP package. ( see pkg/kpp ) |
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C | | | |-KPP_OPEN_DIAGS |
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C | | | |-OBCS_INIT_VARIABLES :: Open bndy. package. ( see pkg/obcs ) |
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C | | | |-AIM_INIT :: Interm. atmos package. ( see pkg/aim ) |
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C | | | |-CTRL_MAP_INI :: Control vector package.( see pkg/ctrl ) |
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C | | | |-COST_INIT :: Cost function package. ( see pkg/cost ) |
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C | | | |-ECCO_INIT :: ECCO support package. ( see pkg/ecco ) |
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C | | | |-INI_FORCING :: Set model initial forcing fields. |
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C | | | | :: Either set in-line or from file as shown. |
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C | | | |-READ_FLD_XY_RS(zonalWindFile) |
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C | | | |-READ_FLD_XY_RS(meridWindFile) |
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C | | | |-READ_FLD_XY_RS(surfQFile) |
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C | | | |-READ_FLD_XY_RS(EmPmRfile) |
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C | | | |-READ_FLD_XY_RS(thetaClimFile) |
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C | | | |-READ_FLD_XY_RS(saltClimFile) |
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C | | | |-READ_FLD_XY_RS(surfQswFile) |
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C | | | |
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C | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
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C | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
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C | | |-UPDATE_CG2D :: Update 2d conjugate grad. for Free-Surf. |
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C | | |-STATE_SUMMARY :: Summarize model prognostic variables. |
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C | | |-TIMEAVE_STATVARS :: Time averaging package ( see pkg/timeave ). |
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C | | |
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C | |-WRITE_STATE :: Controlling routine for IO to dump model state. |
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C | | |-WRITE_REC_XYZ_RL :: Single file I/O |
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C | | |-WRITE_FLD_XYZ_RL :: Multi-file I/O |
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C | | |
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C | |-MONITOR :: Monitor state ( see pkg/monitor ) |
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C | |-CTRL_MAP_FORCING :: Control vector support package. ( see pkg/ctrl ) |
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C====|>| |
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C====|>| **************************** |
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C====|>| BEGIN MAIN TIMESTEPPING LOOP |
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C====|>| **************************** |
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C====|>| |
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C/\ | |-FORWARD_STEP :: Step forward a time-step ( AT LAST !!! ) |
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C/\ | | | |
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C/\ | | |-DUMMY_IN_STEPPING :: autodiff package ( pkg/autoduff ). |
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C/\ | | |-CALC_EXACT_ETA :: Change SSH to flow divergence. |
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C/\ | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
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C/\ | | |-EXF_GETFORCING :: External forcing package. ( pkg/exf ) |
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C/\ | | |-EXTERNAL_FIELDS_LOAD :: Control loading time dep. external data. |
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C/\ | | | | :: Simple interpolcation between end-points |
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C/\ | | | | :: for forcing datasets. |
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C/\ | | | | |
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C/\ | | | |-EXCH :: Sync forcing. in overlap regions. |
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C/\ | | | |
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C/\ | | |-THERMODYNAMICS :: theta, salt + tracer equations driver. |
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C/\ | | | | |
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C/\ | | | |-INTEGRATE_FOR_W :: Integrate for vertical velocity. |
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C/\ | | | |-OBCS_APPLY_W :: Open bndy. package ( see pkg/obcs ). |
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C/\ | | | |-FIND_RHO :: Calculates [rho(S,T,z)-Rhonil] of a slice |
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C/\ | | | |-GRAD_SIGMA :: Calculate isoneutral gradients |
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C/\ | | | |-CALC_IVDC :: Set Implicit Vertical Diffusivity for Convection |
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C/\ | | | | |
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C/\ | | | |-OBCS_CALC :: Open bndy. package ( see pkg/obcs ). |
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C/\ | | | |-EXTERNAL_FORCING_SURF:: Accumulates appropriately dimensioned |
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C/\ | | | | :: forcing terms. |
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C/\ | | | | |
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C/\ | | | |-GMREDI_CALC_TENSOR :: GM package ( see pkg/gmredi ). |
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C/\ | | | |-GMREDI_CALC_TENSOR_DUMMY :: GM package ( see pkg/gmredi ). |
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C/\ | | | |-KPP_CALC :: KPP package ( see pkg/kpp ). |
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C/\ | | | |-KPP_CALC_DUMMY :: KPP package ( see pkg/kpp ). |
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C/\ | | | |-AIM_DO_ATMOS_PHYSICS :: Intermed. atmos package ( see pkg/aim ). |
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C/\ | | | |-GAD_ADVECTION :: Generalised advection driver (multi-dim |
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C/\ | | | | advection case) (see pkg/gad). |
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C/\ | | | |-CALC_COMMON_FACTORS :: Calculate common data (such as volume flux) |
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C/\ | | | |-CALC_DIFFUSIVITY :: Calculate net vertical diffusivity |
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C/\ | | | | | |
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C/\ | | | | |-GMREDI_CALC_DIFF :: GM package ( see pkg/gmredi ). |
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C/\ | | | | |-KPP_CALC_DIFF :: KPP package ( see pkg/kpp ). |
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C/\ | | | | |
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C/\ | | | |-CALC_GT :: Calculate the temperature tendency terms |
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C/\ | | | | | |
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C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
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C/\ | | | | | :: ( see pkg/gad ) |
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C/\ | | | | |-EXTERNAL_FORCING_T :: Problem specific forcing for temperature. |
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C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
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C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gt for free-surface height. |
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C/\ | | | | |
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C/\ | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
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C/\ | | | | |
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C/\ | | | |-CALC_GS :: Calculate the salinity tendency terms |
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C/\ | | | | | |
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C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
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C/\ | | | | | :: ( see pkg/gad ) |
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C/\ | | | | |-EXTERNAL_FORCING_S :: Problem specific forcing for salt. |
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C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
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C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gs for free-surface height. |
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C/\ | | | | |
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C/\ | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
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C/\ | | | | |
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C/\ | | | |-CALC_GTR1 :: Calculate other tracer(s) tendency terms |
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C/\ | | | | | |
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C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
| 242 |
C/\ | | | | | :: ( see pkg/gad ) |
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C/\ | | | | |-EXTERNAL_FORCING_TR:: Problem specific forcing for tracer. |
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C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
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C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gs for free-surface height. |
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C/\ | | | | |
| 247 |
C/\ | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
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C/\ | | | |-OBCS_APPLY_TS :: Open bndy. package (see pkg/obcs ). |
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C/\ | | | |-FREEZE :: Limit range of temperature. |
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C/\ | | | | |
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C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
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C/\ | | | |-OBCS_APPLY_TS :: Open bndy. package (see pkg/obcs ). |
| 253 |
C/\ | | | | |
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C/\ | | | |-AIM_AIM2DYN_EXCHANGES :: Inetermed. atmos (see pkg/aim). |
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C/\ | | | |-EXCH :: Update overlaps |
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C/\ | | | |
| 257 |
C/\ | | |-DYNAMICS :: Momentum equations driver. |
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C/\ | | | | |
| 259 |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Calculate the gradient of the surface |
| 260 |
C/\ | | | | Potential anomaly. |
| 261 |
C/\ | | | |-CALC_VISCOSITY :: Calculate net vertical viscosity |
| 262 |
C/\ | | | | |-KPP_CALC_VISC :: KPP package ( see pkg/kpp ). |
| 263 |
C/\ | | | | |
| 264 |
C/\ | | | |-CALC_PHI_HYD :: Integrate the hydrostatic relation. |
| 265 |
C/\ | | | |-MOM_FLUXFORM :: Flux form mom eqn. package ( see |
| 266 |
C/\ | | | | pkg/mom_fluxform ). |
| 267 |
C/\ | | | |-MOM_VECINV :: Vector invariant form mom eqn. package ( see |
| 268 |
C/\ | | | | pkg/mom_vecinv ). |
| 269 |
C/\ | | | |-TIMESTEP :: Step momentum fields forward in time |
| 270 |
C/\ | | | |-OBCS_APPLY_UV :: Open bndy. package (see pkg/obcs ). |
| 271 |
C/\ | | | | |
| 272 |
C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
| 273 |
C/\ | | | |-OBCS_APPLY_UV :: Open bndy. package (see pkg/obcs ). |
| 274 |
C/\ | | | | |
| 275 |
C/\ | | | |-TIMEAVE_CUMUL_1T :: Time averaging package ( see pkg/timeave ). |
| 276 |
C/\ | | | |-TIMEAVE_CUMUATE :: Time averaging package ( see pkg/timeave ). |
| 277 |
C/\ | | | |-DEBUG_STATS_RL :: Quick debug package ( see pkg/debug ). |
| 278 |
C/\ | | | |
| 279 |
C/\ | | |-CALC_GW :: vert. momentum tendency terms ( NH, QH only ). |
| 280 |
C/\ | | | |
| 281 |
C/\ | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
| 282 |
C/\ | | | |
| 283 |
C/\ | | |-UPDATE_CG2D :: Update 2d conjugate grad. for Free-Surf. |
| 284 |
C/\ | | | |
| 285 |
C/\ | | |-SOLVE_FOR_PRESSURE :: Find surface pressure. |
| 286 |
C/\ | | | |-CALC_DIV_GHAT :: Form the RHS of the surface pressure eqn. |
| 287 |
C/\ | | | |-CG2D :: Two-dim pre-con. conjugate-gradient. |
| 288 |
C/\ | | | |-CG3D :: Three-dim pre-con. conjugate-gradient solver. |
| 289 |
C/\ | | | |
| 290 |
C/\ | | |-THE_CORRECTION_STEP :: Step forward to next time step. |
| 291 |
C/\ | | | | |
| 292 |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure |
| 293 |
C/\ | | | |-CORRECTION_STEP :: Pressure correction to momentum |
| 294 |
C/\ | | | |-CYCLE_TRACER :: Move tracers forward in time. |
| 295 |
C/\ | | | |-OBCS_APPLY :: Open bndy package. see pkg/obcs |
| 296 |
C/\ | | | |-SHAP_FILT_APPLY :: Shapiro filter package. see pkg/shap_filt |
| 297 |
C/\ | | | |-ZONAL_FILT_APPLY :: FFT filter package. see pkg/zonal_filt |
| 298 |
C/\ | | | |-CONVECTIVE_ADJUSTMENT :: Control static instability mixing. |
| 299 |
C/\ | | | | |-FIND_RHO :: Find adjacent densities. |
| 300 |
C/\ | | | | |-CONVECT :: Mix static instability. |
| 301 |
C/\ | | | | |-TIMEAVE_CUMULATE :: Update convection statistics. |
| 302 |
C/\ | | | | |
| 303 |
C/\ | | | |-CALC_EXACT_ETA :: Change SSH to flow divergence. |
| 304 |
C/\ | | | |
| 305 |
C/\ | | |-DO_FIELDS_BLOCKING_EXCHANGES :: Sync up overlap regions. |
| 306 |
C/\ | | | |-EXCH |
| 307 |
C/\ | | | |
| 308 |
C/\ | | |-FLT_MAIN :: Float package ( pkg/flt ). |
| 309 |
C/\ | | | |
| 310 |
C/\ | | |-MONITOR :: Monitor package ( pkg/monitor ). |
| 311 |
C/\ | | | |
| 312 |
C/\ | | |-DO_THE_MODEL_IO :: Standard diagnostic I/O. |
| 313 |
C/\ | | | |-WRITE_STATE :: Core state I/O |
| 314 |
C/\ | | | |-TIMEAVE_STATV_WRITE :: Time averages. see pkg/timeave |
| 315 |
C/\ | | | |-AIM_WRITE_DIAGS :: Intermed. atmos diags. see pkg/aim |
| 316 |
C/\ | | | |-GMREDI_DIAGS :: GM diags. see pkg/gmredi |
| 317 |
C/\ | | | |-KPP_DO_DIAGS :: KPP diags. see pkg/kpp |
| 318 |
C/\ | | | |
| 319 |
C/\ | | |-WRITE_CHECKPOINT :: Do I/O for restart files. |
| 320 |
C/\ | | |
| 321 |
C/\ | |-COST_TILE :: Cost function package. ( see pkg/cost ) |
| 322 |
C<===|=| |
| 323 |
C<===|=| ************************** |
| 324 |
C<===|=| END MAIN TIMESTEPPING LOOP |
| 325 |
C<===|=| ************************** |
| 326 |
C<===|=| |
| 327 |
C | |-COST_FINAL :: Cost function package. ( see pkg/cost ) |
| 328 |
C | |
| 329 |
C |-WRITE_CHECKPOINT :: Final state storage, for restart. |
| 330 |
C | |
| 331 |
C |-TIMER_PRINTALL :: Computational timing summary |
| 332 |
C | |
| 333 |
C |-COMM_STATS :: Summarise inter-proc and inter-thread communication |
| 334 |
C :: events. |
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