/[MITgcm]/manual/s_phys_pkgs/text/top_section.tex
ViewVC logotype

Diff of /manual/s_phys_pkgs/text/top_section.tex

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.47 by jmc, Fri Aug 27 13:15:37 2010 UTC revision 1.48 by jmc, Mon Aug 30 23:09:22 2010 UTC
# Line 10  Line 10 
10    
11  In this chapter and in the following chapter, the MITgcm ``packages'' are  In this chapter and in the following chapter, the MITgcm ``packages'' are
12  described. While you can carry out many experiments with MITgcm by starting  described. While you can carry out many experiments with MITgcm by starting
13  from case studies in section \ref{sect:tutorials}, configuring  from case studies in section \ref{sec:modelExamples}, configuring
14  a brand new experiment or making major changes to an experimental configuration  a brand new experiment or making major changes to an experimental configuration
15  requires some knowledge of the {\it packages}  requires some knowledge of the {\it packages}
16  that make up the full MITgcm code. Packages are used in MITgcm to  that make up the full MITgcm code. Packages are used in MITgcm to
17  help organize and layer various code building blocks that are assembled  help organize and layer various code building blocks that are assembled
18  and selected to perform a specific experiment. Each of the specific experiments  and selected to perform a specific experiment. Each of the specific experiments
19  described in section \ref{sect:tutorials} uses a particular combination  described in section \ref{sec:modelExamples} uses a particular combination
20  of packages.  of packages.
21  Figure \ref{fig:package_organigramme} shows the full set of packages that  Figure \ref{fig:package_organigramme} shows the full set of packages that
22  are available. As shown in the figure packages are classified into different  are available. As shown in the figure packages are classified into different
# Line 42  I/O and time-keeping functions that are Line 42  I/O and time-keeping functions that are
42  %%\epsfig{file=s_phys_pkgs/figs/organigramme_mitgcm_pkg.eps, angle=-90, scale=0.85, width=17cm}  %%\epsfig{file=s_phys_pkgs/figs/organigramme_mitgcm_pkg.eps, angle=-90, scale=0.85, width=17cm}
43  %%\end{minipage}  %%\end{minipage}
44  \resizebox{5.5in}{!}{\includegraphics{s_phys_pkgs/figs/organigramme_mitgcm_pkg2.eps}}  \resizebox{5.5in}{!}{\includegraphics{s_phys_pkgs/figs/organigramme_mitgcm_pkg2.eps}}
45  \label{fig:package_organigramme}  \\
46  \caption{ Hierarchy of code layers that are assembled to make up an MITgcm  \caption{ Hierarchy of code layers that are assembled to make up an MITgcm
47  simulation. Conceptually (and in terms of code organization) MITgcm consists  simulation. Conceptually (and in terms of code organization) MITgcm consists
48  of several layers. At the base is a layer of core software that provides a  of several layers. At the base is a layer of core software that provides a
# Line 59  general purpose infrastructure software Line 59  general purpose infrastructure software
59  numerical packages.  These general purpose packages can be applied to both  numerical packages.  These general purpose packages can be applied to both
60  online and offline simulations and are used in many different physical  online and offline simulations and are used in many different physical
61  simulation types.  Above these layers are more specialized packages.  }  simulation types.  Above these layers are more specialized packages.  }
62    \label{fig:package_organigramme}
63  \end{figure}  \end{figure}
64    
65  The following sections describe the packages shown in  The following sections describe the packages shown in
66  figure \ref{fig:package_organiigramme}. Section \ref{sec:pkg:using}  figure \ref{fig:package_organigramme}. Section \ref{sec:pkg:using}
67  describes the general procedure for using any package in MITgcm.  describes the general procedure for using any package in MITgcm.
68  Following that sections \ref{}-\ref{}  Following that sections \ref{sec:pkg:gad}-\ref{sec:pkg:monitor}
69  layout the algorithms implemented in specific packages  layout the algorithms implemented in specific packages
70  and describe how to use the individual packages. A brief synopsis of the  and describe how to use the individual packages. A brief synopsis of the
71  function of each package is given in table \ref{tab:package_summary_tab}.  function of each package is given in table \ref{tab:package_summary_tab}.
# Line 79  table \ref{tab:package_summary_tab}. Line 80  table \ref{tab:package_summary_tab}.
80  %% processes are sub-grid scale (SGS) phenomena, other processes, such as  %% processes are sub-grid scale (SGS) phenomena, other processes, such as
81  %% open-boundaries, are external to the simulation.  %% open-boundaries, are external to the simulation.
82    
83    \begin{table}
84    \caption{~}
85    \label{tab:package_summary_tab}.
86    \end{table}
87    
88  % Overview  % Overview
89  \newpage  \newpage
90  \input{s_phys_pkgs/text/packages.tex}  \input{s_phys_pkgs/text/packages.tex}
# Line 101  table \ref{tab:package_summary_tab}. Line 107  table \ref{tab:package_summary_tab}.
107  \input{s_phys_pkgs/text/gridalt.tex}  \input{s_phys_pkgs/text/gridalt.tex}
108    
109  % Some Mention of Packages that are part of the main model document  % Some Mention of Packages that are part of the main model document
   
 \section{General purpose numerical infrastructure packages}  
   
110  \newpage  \newpage
111    \section{General purpose numerical infrastructure packages}
112  \input{s_phys_pkgs/text/obcs.tex}  \input{s_phys_pkgs/text/obcs.tex}
113    
114  \newpage  \newpage
# Line 136  table \ref{tab:package_summary_tab}. Line 140  table \ref{tab:package_summary_tab}.
140  \newpage  \newpage
141  \input{s_phys_pkgs/text/cal.tex}  \input{s_phys_pkgs/text/cal.tex}
142    
 \section{Atmosphere Packages}  
143  \newpage  \newpage
144    \section{Atmosphere Packages}
145  \input{s_phys_pkgs/text/aim.tex}  \input{s_phys_pkgs/text/aim.tex}
146    
147  \newpage  \newpage
# Line 146  table \ref{tab:package_summary_tab}. Line 150  table \ref{tab:package_summary_tab}.
150  \newpage  \newpage
151  \input{s_phys_pkgs/text/fizhi.tex}  \input{s_phys_pkgs/text/fizhi.tex}
152    
 \section{Sea Ice Packages}  
153  \newpage  \newpage
154    \section{Sea Ice Packages}
155  \input{s_phys_pkgs/text/thsice.tex}  \input{s_phys_pkgs/text/thsice.tex}
156    
157  \newpage  \newpage
# Line 156  table \ref{tab:package_summary_tab}. Line 160  table \ref{tab:package_summary_tab}.
160  \newpage  \newpage
161  \input{s_phys_pkgs/text/shelfice.tex}  \input{s_phys_pkgs/text/shelfice.tex}
162    
 \section{Packages Related to Coupled Model}  
163  \newpage  \newpage
164    \section{Packages Related to Coupled Model}
165  \input{s_phys_pkgs/text/aim_compon_interf.tex}  \input{s_phys_pkgs/text/aim_compon_interf.tex}
166    
167  \newpage  \newpage
# Line 166  table \ref{tab:package_summary_tab}. Line 170  table \ref{tab:package_summary_tab}.
170  \newpage  \newpage
171  \input{s_phys_pkgs/text/component_communications.tex}  \input{s_phys_pkgs/text/component_communications.tex}
172    
 \section{Biogeochemistry Packages}  
173  \newpage  \newpage
174    \section{Biogeochemistry Packages}
175  \input{s_phys_pkgs/text/gchem.tex}  \input{s_phys_pkgs/text/gchem.tex}
176    
177  \newpage  \newpage
Legend:
Removed from v.1.47  
changed lines
  Added in v.1.48
  ViewVC Help
Powered by ViewVC 1.1.22