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revision 1.8 by mlosch, Wed May 13 12:54:45 2009 UTC revision 1.13 by mlosch, Mon Feb 28 15:59:49 2011 UTC
# Line 16  Patrick Heimbach, Chris Hill and Jinlun Line 16  Patrick Heimbach, Chris Hill and Jinlun
16    
17  %----------------------------------------------------------------------  %----------------------------------------------------------------------
18  \subsubsection{Introduction  \subsubsection{Introduction
19  \label{sec:pkg:exf:intro}}  \label{sec:pkg:seaice:intro}}
20    
21    
22  Package ``seaice'' provides a dynamic and thermodynamic interactive  Package ``seaice'' provides a dynamic and thermodynamic interactive
# Line 25  sea-ice model. Line 25  sea-ice model.
25  CPP options enable or disable different aspects of the package  CPP options enable or disable different aspects of the package
26  (Section \ref{sec:pkg:seaice:config}).  (Section \ref{sec:pkg:seaice:config}).
27  Run-Time options, flags, filenames and field-related dates/times are  Run-Time options, flags, filenames and field-related dates/times are
28  set in \texttt{data.seaice}  set in \code{data.seaice}
29  (Section \ref{sec:pkg:seaice:runtime}).  (Section \ref{sec:pkg:seaice:runtime}).
30  A description of key subroutines is given in Section  A description of key subroutines is given in Section
31  \ref{sec:pkg:seaice:subroutines}.  \ref{sec:pkg:seaice:subroutines}.
32  Input fields, units and sign conventions are summarized in  Input fields, units and sign conventions are summarized in
33  Section \ref{sec:pkg:seaice:fields_units}, and available diagnostics  Section \ref{sec:pkg:seaice:fields_units}, and available diagnostics
34  output is listed in Section \ref{sec:pkg:seaice:fields_diagnostics}.  output is listed in Section \ref{sec:pkg:seaice:diagnostics}.
35    
36  %----------------------------------------------------------------------  %----------------------------------------------------------------------
37    
# Line 46  As with all MITgcm packages, SEAICE can Line 46  As with all MITgcm packages, SEAICE can
46  \begin{itemize}  \begin{itemize}
47  %  %
48  \item  \item
49  using the \texttt{packages.conf} file by adding \texttt{seaice} to it,  using the \code{packages.conf} file by adding \code{seaice} to it,
50  %  %
51  \item  \item
52  or using \texttt{genmake2} adding  or using \code{genmake2} adding
53  \texttt{-enable=seaice} or \texttt{-disable=seaice} switches  \code{-enable=seaice} or \code{-disable=seaice} switches
54  %  %
55  \item  \item
56  \textit{required packages and CPP options}: \\  \textit{required packages and CPP options}: \\
57  SEAICE requires the external forcing package \texttt{exf} to be enabled;  SEAICE requires the external forcing package \code{exf} to be enabled;
58  no additional CPP options are required.  no additional CPP options are required.
59  %  %
60  \end{itemize}  \end{itemize}
61  (see Section \ref{sect:buildingCode}).  (see Section \ref{sec:buildingCode}).
62    
63  Parts of the SEAICE code can be enabled or disabled at compile time  Parts of the SEAICE code can be enabled or disabled at compile time
64  via CPP preprocessor flags. These options are set in either  via CPP preprocessor flags. These options are set in either
65  \texttt{SEAICE\_OPTIONS.h} or in \texttt{ECCO\_CPPOPTIONS.h}.  \code{SEAICE\_OPTIONS.h} or in \code{ECCO\_CPPOPTIONS.h}.
66  Table \ref{tab:pkg:seaice:cpp} summarizes these options.  Table \ref{tab:pkg:seaice:cpp} summarizes these options.
67    
68  \begin{table}[h!]  \begin{table}[!ht]
69  \centering  \centering
70    \label{tab:pkg:seaice:cpp}    \label{tab:pkg:seaice:cpp}
71    {\footnotesize    {\footnotesize
# Line 73  Table \ref{tab:pkg:seaice:cpp} summarize Line 73  Table \ref{tab:pkg:seaice:cpp} summarize
73        \hline        \hline
74        \textbf{CPP option}  &  \textbf{Description}  \\        \textbf{CPP option}  &  \textbf{Description}  \\
75        \hline \hline        \hline \hline
76          \texttt{SEAICE\_DEBUG} &          \code{SEAICE\_DEBUG} &
77            Enhance STDOUT for debugging \\            Enhance STDOUT for debugging \\
78          \texttt{SEAICE\_ALLOW\_DYNAMICS} &          \code{SEAICE\_ALLOW\_DYNAMICS} &
79            sea-ice dynamics code \\            sea-ice dynamics code \\
80          \texttt{SEAICE\_CGRID} &          \code{SEAICE\_CGRID} &
81            LSR solver on C-grid (rather than original B-grid) \\            LSR solver on C-grid (rather than original B-grid) \\
82          \texttt{SEAICE\_ALLOW\_EVP} &          \code{SEAICE\_ALLOW\_EVP} &
83            use EVP rather than LSR rheology solver \\            use EVP rather than LSR rheology solver \\
84          \texttt{SEAICE\_EXTERNAL\_FLUXES} &          \code{SEAICE\_EXTERNAL\_FLUXES} &
85            use EXF-computed fluxes as starting point \\            use EXF-computed fluxes as starting point \\
86          \texttt{SEAICE\_MULTICATEGORY} &          \code{SEAICE\_MULTICATEGORY} &
87            enable 8-category thermodynamics (by default undefined)\\            enable 8-category thermodynamics (by default undefined)\\
88          \texttt{SEAICE\_VARIABLE\_FREEZING\_POINT} &          \code{SEAICE\_VARIABLE\_FREEZING\_POINT} &
89            enable linear dependence of the freezing point on salinity            enable linear dependence of the freezing point on salinity
90            (by default undefined)\\            (by default undefined)\\
91          \texttt{ALLOW\_SEAICE\_FLOODING} &          \code{ALLOW\_SEAICE\_FLOODING} &
92            enable snow to ice conversion for submerged sea-ice \\            enable snow to ice conversion for submerged sea-ice \\
93          \texttt{SEAICE\_SALINITY} &          \code{SEAICE\_SALINITY} &
94            enable "salty" sea-ice (by default undefined) \\            enable "salty" sea-ice (by default undefined) \\
95          \texttt{SEAICE\_AGE} &          \code{SEAICE\_AGE} &
96            enable "age tracer" sea-ice (by default undefined) \\            enable "age tracer" sea-ice (by default undefined) \\
97          \texttt{SEAICE\_CAP\_HEFF} &          \code{SEAICE\_CAP\_HEFF} &
98            enable capping of sea-ice thickness to MAX\_HEFF \\ \hline            enable capping of sea-ice thickness to MAX\_HEFF \\ \hline
99          \texttt{SEAICE\_BICE\_STRESS} &          \code{SEAICE\_BICE\_STRESS} &
100            B-grid only for backward compatiblity: turn on ice-stress on            B-grid only for backward compatiblity: turn on ice-stress on
101            ocean\\            ocean\\
102          \texttt{EXPLICIT\_SSH\_SLOPE} &          \code{EXPLICIT\_SSH\_SLOPE} &
103            B-grid only for backward compatiblity: use ETAN for tilt            B-grid only for backward compatiblity: use ETAN for tilt
104            computations rather than geostrophic velocities \\            computations rather than geostrophic velocities \\
105        \hline        \hline
# Line 114  Table \ref{tab:pkg:seaice:cpp} summarize Line 114  Table \ref{tab:pkg:seaice:cpp} summarize
114  \label{sec:pkg:seaice:runtime}}  \label{sec:pkg:seaice:runtime}}
115    
116  Run-time parameters are set in files  Run-time parameters are set in files
117  \texttt{data.pkg} (read in \texttt{packages\_readparms.F}),  \code{data.pkg} (read in \code{packages\_readparms.F}),
118  and \texttt{data.seaice} (read in \texttt{seaice\_readparms.F}).  and \code{data.seaice} (read in \code{seaice\_readparms.F}).
119    
120  \paragraph{Enabling the package}  \paragraph{Enabling the package}
121  ~ \\  ~ \\
122  %  %
123  A package is switched on/off at run-time by setting  A package is switched on/off at run-time by setting
124  (e.g. for SEAICE) \texttt{useSEAICE = .TRUE.} in \texttt{data.pkg}.  (e.g. for SEAICE) \code{useSEAICE = .TRUE.} in \code{data.pkg}.
125    
126  \paragraph{General flags and parameters}  \paragraph{General flags and parameters}
127  ~ \\  ~ \\
128  %  %
129  Table~\ref{tab:pkg:seaice:runtimeparms} lists most run-time parameters.  Table~\ref{tab:pkg:seaice:runtimeparms} lists most run-time parameters.
130  \input{part6/seaice-parms.tex}  \input{s_phys_pkgs/text/seaice-parms.tex}
   
131    
132    \paragraph{Input fields and units\label{sec:pkg:seaice:fields_units}}
133    \begin{description}
134    \item[\code{HeffFile}:] Initial sea ice thickness averaged over grid cell
135      in meters; initializes variable \code{HEFF};
136    \item[\code{AreaFile}:] Initial fractional sea ice cover, range $[0,1]$;
137      initializes variable \code{AREA};
138    \item[\code{HsnowFile}:] Initial snow thickness on sea ice averaged
139      over grid cell in meters; initializes variable \code{HSNOW};
140    \item[\code{HsaltFile}:] Initial salinity of sea ice averaged over grid
141      cell in g/m$^2$; initializes variable \code{HSALT};
142    \item[\code{IceAgeFile}:] Initial ice age of sea ice averaged over grid
143      cell in seconds; initializes variable \code{ICEAGE};
144    \end{description}
145    
146  %----------------------------------------------------------------------  %----------------------------------------------------------------------
147  \subsubsection{Description  \subsubsection{Description
# Line 232  surface heat flux, and net shortwave flu Line 244  surface heat flux, and net shortwave flu
244  global: in ice-free regions bulk formulae are used to estimate oceanic  global: in ice-free regions bulk formulae are used to estimate oceanic
245  forcing from the atmospheric fields.  forcing from the atmospheric fields.
246    
247  \subsubsection{Dynamics}  \paragraph{Dynamics\label{sec:pkg:seaice:dynamics}}
 \label{sec:pkg:seaice:dynamics}  
248    
249  \newcommand{\vek}[1]{\ensuremath{\vec{\mathbf{#1}}}}  \newcommand{\vek}[1]{\ensuremath{\vec{\mathbf{#1}}}}
250  \newcommand{\vtau}{\vek{\mathbf{\tau}}}  \newcommand{\vtau}{\vek{\mathbf{\tau}}}
# Line 264  terms are given by Line 275  terms are given by
275    \vtau_{air}   = & \rho_{air}  C_{air}   |\vek{U}_{air}  -\vek{u}|    \vtau_{air}   = & \rho_{air}  C_{air}   |\vek{U}_{air}  -\vek{u}|
276                     R_{air}  (\vek{U}_{air}  -\vek{u}), \\                     R_{air}  (\vek{U}_{air}  -\vek{u}), \\
277    \vtau_{ocean} = & \rho_{ocean}C_{ocean} |\vek{U}_{ocean}-\vek{u}|    \vtau_{ocean} = & \rho_{ocean}C_{ocean} |\vek{U}_{ocean}-\vek{u}|
278                     R_{ocean}(\vek{U}_{ocean}-\vek{u}), \\                     R_{ocean}(\vek{U}_{ocean}-\vek{u}),
279  \end{align*}  \end{align*}
280  where $\vek{U}_{air/ocean}$ are the surface winds of the atmosphere  where $\vek{U}_{air/ocean}$ are the surface winds of the atmosphere
281  and surface currents of the ocean, respectively; $C_{air/ocean}$ are  and surface currents of the ocean, respectively; $C_{air/ocean}$ are
# Line 294  both thickness $h$ and compactness (conc Line 305  both thickness $h$ and compactness (conc
305    P_{\max} = P^{*}c\,h\,e^{[C^{*}\cdot(1-c)]},    P_{\max} = P^{*}c\,h\,e^{[C^{*}\cdot(1-c)]},
306  \label{eq:icestrength}  \label{eq:icestrength}
307  \end{equation}  \end{equation}
308  with the constants $P^{*}$ (run-time parameter \texttt{SEAICE\_strength}) and  with the constants $P^{*}$ (run-time parameter \code{SEAICE\_strength}) and
309  $C^{*}=20$. The nonlinear bulk and shear  $C^{*}=20$. The nonlinear bulk and shear
310  viscosities $\eta$ and $\zeta$ are functions of ice strain rate  viscosities $\eta$ and $\zeta$ are functions of ice strain rate
311  invariants and ice strength such that the principal components of the  invariants and ice strength such that the principal components of the
# Line 313  minor axis $e$ equal to $2$; they are gi Line 324  minor axis $e$ equal to $2$; they are gi
324  \end{align*}  \end{align*}
325  The bulk viscosities are bounded above by imposing both a minimum  The bulk viscosities are bounded above by imposing both a minimum
326  $\Delta_{\min}$ (for numerical reasons, run-time parameter  $\Delta_{\min}$ (for numerical reasons, run-time parameter
327  \texttt{SEAICE\_EPS} with a default value of  \code{SEAICE\_EPS} with a default value of
328  $10^{-10}\text{\,s}^{-1}$) and a maximum $\zeta_{\max} =  $10^{-10}\text{\,s}^{-1}$) and a maximum $\zeta_{\max} =
329  P_{\max}/\Delta^*$, where  P_{\max}/\Delta^*$, where
330  $\Delta^*=(5\times10^{12}/2\times10^4)\text{\,s}^{-1}$. (There is also  $\Delta^*=(5\times10^{12}/2\times10^4)\text{\,s}^{-1}$. (There is also
331  the option of bounding $\zeta$ from below by setting run-time  the option of bounding $\zeta$ from below by setting run-time
332  parameter \texttt{SEAICE\_zetaMin} $>0$, but this is generally not  parameter \code{SEAICE\_zetaMin} $>0$, but this is generally not
333  recommended). For stress tensor computation the replacement pressure $P  recommended). For stress tensor computation the replacement pressure $P
334  = 2\,\Delta\zeta$ \citep{hibler95} is used so that the stress state  = 2\,\Delta\zeta$ \citep{hibler95} is used so that the stress state
335  always lies on the elliptic yield curve by definition.  always lies on the elliptic yield curve by definition.
# Line 332  is capped to suppress any tensile stress Line 343  is capped to suppress any tensile stress
343    {\sqrt{(\dot{\epsilon}_{11}+\dot{\epsilon}_{22})^2    {\sqrt{(\dot{\epsilon}_{11}+\dot{\epsilon}_{22})^2
344        +4\dot{\epsilon}_{12}^2}}\right).        +4\dot{\epsilon}_{12}^2}}\right).
345  \end{equation}  \end{equation}
346  To enable this method, set \texttt{\#define SEAICE\_ALLOW\_TEM} in  To enable this method, set \code{\#define SEAICE\_ALLOW\_TEM} in
347  \texttt{SEAICE\_OPTIONS.h} and turn it on with  \code{SEAICE\_OPTIONS.h} and turn it on with
348  \texttt{SEAICEuseTEM=.TRUE.} in \texttt{data.seaice}.  \code{SEAICEuseTEM=.TRUE.} in \code{data.seaice}.
349    
350  In the current implementation, the VP-model is integrated with the  In the current implementation, the VP-model is integrated with the
351  semi-implicit line successive over relaxation (LSOR)-solver of  semi-implicit line successive over relaxation (LSOR)-solver of
# Line 393  $T=E_{0}\Delta{t}$ with the tunable para Line 404  $T=E_{0}\Delta{t}$ with the tunable para
404  the external (long) timestep $\Delta{t}$. \citet{hun97} recommend  the external (long) timestep $\Delta{t}$. \citet{hun97} recommend
405  $E_{0} = \frac{1}{3}$ (which is the default value in the code).  $E_{0} = \frac{1}{3}$ (which is the default value in the code).
406    
407  To use the EVP solver, make sure that both \texttt{SEAICE\_CGRID} and  To use the EVP solver, make sure that both \code{SEAICE\_CGRID} and
408  \texttt{SEAICE\_ALLOW\_EVP} are defined in \texttt{SEAICE\_OPTIONS.h}  \code{SEAICE\_ALLOW\_EVP} are defined in \code{SEAICE\_OPTIONS.h}
409  (default). The solver is turned on by setting the sub-cycling time  (default). The solver is turned on by setting the sub-cycling time
410  step \texttt{SEAICE\_deltaTevp} to a value larger than zero. The  step \code{SEAICE\_deltaTevp} to a value larger than zero. The
411  choice of this time step is under debate. \citet{hun97} recommend  choice of this time step is under debate. \citet{hun97} recommend
412  order(120) time steps for the EVP solver within one model time step  order(120) time steps for the EVP solver within one model time step
413  $\Delta{t}$ (\texttt{deltaTmom}). One can also choose order(120) time  $\Delta{t}$ (\code{deltaTmom}). One can also choose order(120) time
414  steps within the forcing time scale, but then we recommend adjusting  steps within the forcing time scale, but then we recommend adjusting
415  the damping time scale $T$ accordingly, by setting either  the damping time scale $T$ accordingly, by setting either
416  \texttt{SEAICE\_elasticParm} ($E_{0}$), so that  \code{SEAICE\_elasticParm} ($E_{0}$), so that
417  $E_{0}\Delta{t}=\mbox{forcing time scale}$, or directly  $E_{0}\Delta{t}=\mbox{forcing time scale}$, or directly
418  \texttt{SEAICE\_evpTauRelax} ($T$) to the forcing time scale.  \code{SEAICE\_evpTauRelax} ($T$) to the forcing time scale.
419    
420  Moving sea ice exerts a stress on the ocean which is the opposite of  Moving sea ice exerts a stress on the ocean which is the opposite of
421  the stress $\vtau_{ocean}$ in Eq.~\ref{eq:momseaice}. This stess is  the stress $\vtau_{ocean}$ in Eq.~\ref{eq:momseaice}. This stess is
# Line 422  advect tracers, is really an average ove Line 433  advect tracers, is really an average ove
433  velocity and the ice velocity leading to an inconsistency as the ice  velocity and the ice velocity leading to an inconsistency as the ice
434  temperature and salinity are different from the oceanic variables.  temperature and salinity are different from the oceanic variables.
435  To turn on the stress formulation of \citet{hibler87}, set  To turn on the stress formulation of \citet{hibler87}, set
436  \texttt{useHB87StressCoupling=.TRUE.} in \texttt{data.seaice}.  \code{useHB87StressCoupling=.TRUE.} in \code{data.seaice}.
437    
438    
439  % Our discretization differs from \citet{zhang97, zhang03} in the  % Our discretization differs from \citet{zhang97, zhang03} in the
# Line 434  To turn on the stress formulation of \ci Line 445  To turn on the stress formulation of \ci
445  % differences and averaging is only involved in computing $\Delta$ and  % differences and averaging is only involved in computing $\Delta$ and
446  % $P$ at vorticity points.  % $P$ at vorticity points.
447    
448  \subsubsection{Finite-volume discretization of the stress tensor  \paragraph{Finite-volume discretization of the stress tensor
449    divergence}    divergence\label{sec:pkg:seaice:discretization}}
 \label{sec:pkg:seaice:discretization}  
450  On an Arakawa C~grid, ice thickness and concentration and thus ice  On an Arakawa C~grid, ice thickness and concentration and thus ice
451  strength $P$ and bulk and shear viscosities $\zeta$ and $\eta$ are  strength $P$ and bulk and shear viscosities $\zeta$ and $\eta$ are
452  naturally defined a C-points in the center of the grid  naturally defined a C-points in the center of the grid
# Line 515  widths. For the $u$-equation ($\alpha=1$ Line 525  widths. For the $u$-equation ($\alpha=1$
525    + \Delta{x}_1\sigma_{21}\biggl|_{x_{2}}^{x_{2}+\Delta{x}_{2}}    + \Delta{x}_1\sigma_{21}\biggl|_{x_{2}}^{x_{2}+\Delta{x}_{2}}
526    \biggr\} \\ \notag    \biggr\} \\ \notag
527    =& \frac{1}{A_{i,j}^w} \biggl\{    =& \frac{1}{A_{i,j}^w} \biggl\{
528    (\Delta{x}_2\sigma_{11})_{i,j}^C - (\Delta{x}_2\sigma_{11})_{i-1,j}^C \\\notag    (\Delta{x}_2\sigma_{11})_{i,j}^C -
529      (\Delta{x}_2\sigma_{11})_{i-1,j}^C
530      \\\notag
531    \phantom{=}& \phantom{\frac{1}{A_{i,j}^w} \biggl\{}    \phantom{=}& \phantom{\frac{1}{A_{i,j}^w} \biggl\{}
532    + (\Delta{x}_1\sigma_{21})_{i,j+1}^Z - (\Delta{x}_1\sigma_{21})_{i,j}^Z    + (\Delta{x}_1\sigma_{21})_{i,j+1}^Z - (\Delta{x}_1\sigma_{21})_{i,j}^Z
533    \biggr\}    \biggr\}
534    \intertext{with}  \end{align}
535    with
536    \begin{align}
537    (\Delta{x}_2\sigma_{11})_{i,j}^C =& \phantom{+}    (\Delta{x}_2\sigma_{11})_{i,j}^C =& \phantom{+}
538    \Delta{y}_{i,j}^{F}(\zeta + \eta)^{C}_{i,j}    \Delta{y}_{i,j}^{F}(\zeta + \eta)^{C}_{i,j}
539    \frac{u_{i+1,j}-u_{i,j}}{\Delta{x}_{i,j}^{F}} \\ \notag    \frac{u_{i+1,j}-u_{i,j}}{\Delta{x}_{i,j}^{F}} \\ \notag
# Line 530  widths. For the $u$-equation ($\alpha=1$ Line 544  widths. For the $u$-equation ($\alpha=1$
544    \phantom{=}& + \Delta{y}_{i,j}^{F}(\zeta - \eta)^{C}_{i,j}    \phantom{=}& + \Delta{y}_{i,j}^{F}(\zeta - \eta)^{C}_{i,j}
545    k_{1,i,j}^{C}\frac{u_{i+1,j}+u_{i,j}}{2} \\ \notag    k_{1,i,j}^{C}\frac{u_{i+1,j}+u_{i,j}}{2} \\ \notag
546    \phantom{=}& - \Delta{y}_{i,j}^{F} \frac{P}{2} \\    \phantom{=}& - \Delta{y}_{i,j}^{F} \frac{P}{2} \\
   %  
547    (\Delta{x}_1\sigma_{21})_{i,j}^Z =& \phantom{+}    (\Delta{x}_1\sigma_{21})_{i,j}^Z =& \phantom{+}
548    \Delta{x}_{i,j}^{V}\overline{\eta}^{Z}_{i,j}    \Delta{x}_{i,j}^{V}\overline{\eta}^{Z}_{i,j}
549    \frac{u_{i,j}-u_{i,j-1}}{\Delta{y}_{i,j}^{U}} \\ \notag    \frac{u_{i,j}-u_{i,j-1}}{\Delta{y}_{i,j}^{U}} \\ \notag
# Line 562  Similarly, we have for the $v$-equation Line 575  Similarly, we have for the $v$-equation
575    \phantom{=}& \phantom{\frac{1}{A_{i,j}^s} \biggl\{}    \phantom{=}& \phantom{\frac{1}{A_{i,j}^s} \biggl\{}
576    + (\Delta{x}_1\sigma_{22})_{i,j}^C - (\Delta{x}_1\sigma_{22})_{i,j-1}^C    + (\Delta{x}_1\sigma_{22})_{i,j}^C - (\Delta{x}_1\sigma_{22})_{i,j-1}^C
577    \biggr\}    \biggr\}
578    \intertext{with}  \end{align}
579    with
580    \begin{align}
581    (\Delta{x}_1\sigma_{12})_{i,j}^Z =& \phantom{+}    (\Delta{x}_1\sigma_{12})_{i,j}^Z =& \phantom{+}
582    \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}    \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}
583    \frac{u_{i,j}-u_{i,j-1}}{\Delta{y}_{i,j}^{U}} \\\notag    \frac{u_{i,j}-u_{i,j-1}}{\Delta{y}_{i,j}^{U}}
584    &+ \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}    \\\notag &
585    \frac{v_{i,j}-v_{i-1,j}}{\Delta{x}_{i,j}^{V}} \\ \notag    + \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}
586    &- \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}    \frac{v_{i,j}-v_{i-1,j}}{\Delta{x}_{i,j}^{V}} \\\notag
   k_{2,i,j}^{Z}\frac{u_{i,j}+u_{i,j-1}}{2} \\ \notag  
587    &- \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}    &- \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}
588      k_{2,i,j}^{Z}\frac{u_{i,j}+u_{i,j-1}}{2}
589      \\\notag &
590      - \Delta{y}_{i,j}^{U}\overline{\eta}^{Z}_{i,j}
591    k_{1,i,j}^{Z}\frac{v_{i,j}+v_{i-1,j}}{2} \\ \notag    k_{1,i,j}^{Z}\frac{v_{i,j}+v_{i-1,j}}{2} \\ \notag
   %  
592    (\Delta{x}_2\sigma_{22})_{i,j}^C =& \phantom{+}    (\Delta{x}_2\sigma_{22})_{i,j}^C =& \phantom{+}
593    \Delta{x}_{i,j}^{F}(\zeta - \eta)^{C}_{i,j}    \Delta{x}_{i,j}^{F}(\zeta - \eta)^{C}_{i,j}
594    \frac{u_{i+1,j}-u_{i,j}}{\Delta{x}_{i,j}^{F}} \\ \notag    \frac{u_{i+1,j}-u_{i,j}}{\Delta{x}_{i,j}^{F}} \\ \notag
# Line 591  free slip boundary conditions the latera Line 607  free slip boundary conditions the latera
607  analogy to $(\epsilon_{12})^Z=0$ on boundaries, we set  analogy to $(\epsilon_{12})^Z=0$ on boundaries, we set
608  $\sigma_{21}^{Z}=0$, or equivalently $\eta_{i,j}^{Z}=0$, on boundaries.  $\sigma_{21}^{Z}=0$, or equivalently $\eta_{i,j}^{Z}=0$, on boundaries.
609    
610  \subsubsection{Thermodynamics}  \paragraph{Thermodynamics\label{sec:pkg:seaice:thermodynamics}}
 \label{sec:pkg:seaice:thermodynamics}  
611    
612  In its original formulation the sea ice model \citep{menemenlis05}  In its original formulation the sea ice model \citep{menemenlis05}
613  uses simple thermodynamics following the appendix of  uses simple thermodynamics following the appendix of
# Line 616  minimum imposed ice thickness of $5\text Line 631  minimum imposed ice thickness of $5\text
631  \frac{2n-1}{7}\,h$ for $n\in[1,7]$. The heat fluxes computed for each  \frac{2n-1}{7}\,h$ for $n\in[1,7]$. The heat fluxes computed for each
632  thickness category is area-averaged to give the total heat flux  thickness category is area-averaged to give the total heat flux
633  \citep{hibler84}. To use this thickness category parameterization set  \citep{hibler84}. To use this thickness category parameterization set
634  \texttt{\#define SEAICE\_MULTICATEGORY}; note that this requires  \code{\#define SEAICE\_MULTICATEGORY}; note that this requires
635  different restart files and switching this flag on in the middle of an  different restart files and switching this flag on in the middle of an
636  integration is not possible.  integration is not possible.
637    
# Line 626  $\rho\,c_{p}\left(T_{w}-T_{fr}\right)$ w Line 641  $\rho\,c_{p}\left(T_{w}-T_{fr}\right)$ w
641  the density and heat capacity of sea water and $T_{fr}$ is the local  the density and heat capacity of sea water and $T_{fr}$ is the local
642  freezing point temperature that is a function of salinity. This flux  freezing point temperature that is a function of salinity. This flux
643  is not assumed to instantaneously melt or create ice, but a time scale  is not assumed to instantaneously melt or create ice, but a time scale
644  of three days (run-time parameter \texttt{SEAICE\_gamma\_t}) is used  of three days (run-time parameter \code{SEAICE\_gamma\_t}) is used
645  to relax $T_{w}$ to the freezing point.  to relax $T_{w}$ to the freezing point.
646  %  %
647  The parameterization of lateral and vertical growth of sea ice follows  The parameterization of lateral and vertical growth of sea ice follows
648  that of \citet{hib79, hib80}; the so-called lead closing parameter  that of \citet{hib79, hib80}; the so-called lead closing parameter
649  $h_{0}$ (run-time parameter \texttt{HO}) has a default value of  $h_{0}$ (run-time parameter \code{HO}) has a default value of
650  0.5~meters.  0.5~meters.
651    
652  On top of the ice there is a layer of snow that modifies the heat flux  On top of the ice there is a layer of snow that modifies the heat flux
# Line 644  the snow is flooded, a simple mass conse Line 659  the snow is flooded, a simple mass conse
659  snowice formation (a flood-freeze algorithm following Archimedes'  snowice formation (a flood-freeze algorithm following Archimedes'
660  principle) turns snow into ice until the ice surface is back at $z=0$  principle) turns snow into ice until the ice surface is back at $z=0$
661  \citep{leppaeranta83}. The flood-freeze algorithm is enabled with the CPP-flag  \citep{leppaeranta83}. The flood-freeze algorithm is enabled with the CPP-flag
662  \texttt{SEAICE\_ALLOW\_FLOODING} and turned on with run-time parameter  \code{SEAICE\_ALLOW\_FLOODING} and turned on with run-time parameter
663  \texttt{SEAICEuseFlooding=.true.}.  \code{SEAICEuseFlooding=.true.}.
664    
665  Effective ice thickness (ice volume per unit area,  Effective ice thickness (ice volume per unit area,
666  $c\cdot{h}$), concentration $c$ and effective snow thickness  $c\cdot{h}$), concentration $c$ and effective snow thickness
# Line 665  preserve sharp gradients and edges that Line 680  preserve sharp gradients and edges that
680  distributions and to rule out unphysical over- and undershoots  distributions and to rule out unphysical over- and undershoots
681  (negative thickness or concentration). These scheme conserve volume  (negative thickness or concentration). These scheme conserve volume
682  and horizontal area and are unconditionally stable, so that we can set  and horizontal area and are unconditionally stable, so that we can set
683  $D_{X}=0$. Run-timeflags: \texttt{SEAICEadvScheme} (default=2),  $D_{X}=0$. Run-timeflags: \code{SEAICEadvScheme} (default=2),
684  \texttt{DIFF1} (default=0.004).  \code{DIFF1} (default=0.004).
685    
686  There is considerable doubt about the reliability of a ``zero-layer''  There is considerable doubt about the reliability of a ``zero-layer''
687  thermodynamic model --- \citet{semtner84} found significant errors in  thermodynamic model --- \citet{semtner84} found significant errors in
# Line 699  enthalpy and to prevent false enthalpy e Line 714  enthalpy and to prevent false enthalpy e
714  \subsubsection{Key subroutines  \subsubsection{Key subroutines
715  \label{sec:pkg:seaice:subroutines}}  \label{sec:pkg:seaice:subroutines}}
716    
717  Top-level routine: \texttt{seaice\_model.F}  Top-level routine: \code{seaice\_model.F}
718    
719  {\footnotesize  {\footnotesize
720  \begin{verbatim}  \begin{verbatim}
# Line 758  Diagnostics output is available via the Line 773  Diagnostics output is available via the
773  Available output fields are summarized in  Available output fields are summarized in
774  Table \ref{tab:pkg:seaice:diagnostics}.  Table \ref{tab:pkg:seaice:diagnostics}.
775    
776  \begin{table}[h!]  \begin{table}[!ht]
777  \centering  \centering
778  \label{tab:pkg:seaice:diagnostics}  \label{tab:pkg:seaice:diagnostics}
779  {\footnotesize  {\footnotesize
# Line 823  Table \ref{tab:pkg:seaice:diagnostics}. Line 838  Table \ref{tab:pkg:seaice:diagnostics}.
838    
839  %%% Local Variables:  %%% Local Variables:
840  %%% mode: latex  %%% mode: latex
841  %%% TeX-master: "../manual"  %%% TeX-master: "../../manual"
842  %%% End:  %%% End:

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