s_phys_pkgs/text/ptracers.tex

\subsection {PTRACERS Package} 
\label{sec:pkg:ptracers}
\begin{rawhtml}
<!-- CMIREDIR:package_ptracers: -->
\end{rawhtml}

\subsubsection {Introduction}

\subsubsection {Equations}

\subsubsection {Key subroutines and parameters}

\subsubsection{PTRACERS Diagnostics}
\label{sec:pkg:ptracers:diagnostics}

{\footnotesize
\begin{verbatim}

------------------------------------------------------------------------
<-Name->|Levs|<-parsing code->|<--  Units   -->|<- Tile (max=80c) 
------------------------------------------------------------------------
TRAC01  | 15 |SM P    MR      |mol C/m         |Mass-Weighted Dissolved Inorganic Carbon
UTRAC01 | 15 |UU   171MR      |mol C/m.m/s     |Zonal Mass-Weighted Transp of Dissolved Inorganic Carbon
VTRAC01 | 15 |VV   170MR      |mol C/m.m/s     |Merid Mass-Weighted Transp of Dissolved Inorganic Carbon
WTRAC01 | 15 |WM      MR      |mol C/m.m/s     |Vert  Mass-Weighted Transp of Dissolved Inorganic Carbon
ADVrTr01| 15 |WM      LR      |mol C/m.m^3/s   |Vertical   Advective Flux of Dissolved Inorganic Carbon
ADVxTr01| 15 |UU   175MR      |mol C/m.m^3/s   |Zonal      Advective Flux of Dissolved Inorganic Carbon
ADVyTr01| 15 |VV   174MR      |mol C/m.m^3/s   |Meridional Advective Flux of Dissolved Inorganic Carbon
DFrETr01| 15 |WM      LR      |mol C/m.m^3/s   |Vertical Diffusive Flux of Dissolved Inorganic Carbon (Explicit part)
DIFxTr01| 15 |UU   178MR      |mol C/m.m^3/s   |Zonal      Diffusive Flux of Dissolved Inorganic Carbon
DIFyTr01| 15 |VV   177MR      |mol C/m.m^3/s   |Meridional Diffusive Flux of Dissolved Inorganic Carbon
DFrITr01| 15 |WM      LR      |mol C/m.m^3/s   |Vertical Diffusive Flux of Dissolved Inorganic Carbon (Implicit part)
TRAC02  | 15 |SM P    MR      |mol eq/         |Mass-Weighted Alkalinity
UTRAC02 | 15 |UU   182MR      |mol eq/.m/s     |Zonal Mass-Weighted Transp of Alkalinity
VTRAC02 | 15 |VV   181MR      |mol eq/.m/s     |Merid Mass-Weighted Transp of Alkalinity
WTRAC02 | 15 |WM      MR      |mol eq/.m/s     |Vert  Mass-Weighted Transp of Alkalinity
ADVrTr02| 15 |WM      LR      |mol eq/.m^3/s   |Vertical   Advective Flux of Alkalinity
ADVxTr02| 15 |UU   186MR      |mol eq/.m^3/s   |Zonal      Advective Flux of Alkalinity
ADVyTr02| 15 |VV   185MR      |mol eq/.m^3/s   |Meridional Advective Flux of Alkalinity
DFrETr02| 15 |WM      LR      |mol eq/.m^3/s   |Vertical Diffusive Flux of Alkalinity (Explicit part)
DIFxTr02| 15 |UU   189MR      |mol eq/.m^3/s   |Zonal      Diffusive Flux of Alkalinity
DIFyTr02| 15 |VV   188MR      |mol eq/.m^3/s   |Meridional Diffusive Flux of Alkalinity
DFrITr02| 15 |WM      LR      |mol eq/.m^3/s   |Vertical Diffusive Flux of Alkalinity (Implicit part)
TRAC03  | 15 |SM P    MR      |mol P/m         |Mass-Weighted Phosphate
UTRAC03 | 15 |UU   193MR      |mol P/m.m/s     |Zonal Mass-Weighted Transp of Phosphate
VTRAC03 | 15 |VV   192MR      |mol P/m.m/s     |Merid Mass-Weighted Transp of Phosphate
WTRAC03 | 15 |WM      MR      |mol P/m.m/s     |Vert  Mass-Weighted Transp of Phosphate
ADVrTr03| 15 |WM      LR      |mol P/m.m^3/s   |Vertical   Advective Flux of Phosphate
ADVxTr03| 15 |UU   197MR      |mol P/m.m^3/s   |Zonal      Advective Flux of Phosphate
ADVyTr03| 15 |VV   196MR      |mol P/m.m^3/s   |Meridional Advective Flux of Phosphate
DFrETr03| 15 |WM      LR      |mol P/m.m^3/s   |Vertical Diffusive Flux of Phosphate (Explicit part)
DIFxTr03| 15 |UU   200MR      |mol P/m.m^3/s   |Zonal      Diffusive Flux of Phosphate
------------------------------------------------------------------------
<-Name->|Levs|<-parsing code->|<--  Units   -->|<- Tile (max=80c) 
------------------------------------------------------------------------
DIFyTr03| 15 |VV   199MR      |mol P/m.m^3/s   |Meridional Diffusive Flux of Phosphate
DFrITr03| 15 |WM      LR      |mol P/m.m^3/s   |Vertical Diffusive Flux of Phosphate (Implicit part)
TRAC04  | 15 |SM P    MR      |mol P/m         |Mass-Weighted Dissolved Organic Phosphorus
UTRAC04 | 15 |UU   204MR      |mol P/m.m/s     |Zonal Mass-Weighted Transp of Dissolved Organic Phosphorus
VTRAC04 | 15 |VV   203MR      |mol P/m.m/s     |Merid Mass-Weighted Transp of Dissolved Organic Phosphorus
WTRAC04 | 15 |WM      MR      |mol P/m.m/s     |Vert  Mass-Weighted Transp of Dissolved Organic Phosphorus
ADVrTr04| 15 |WM      LR      |mol P/m.m^3/s   |Vertical   Advective Flux of Dissolved Organic Phosphorus
ADVxTr04| 15 |UU   208MR      |mol P/m.m^3/s   |Zonal      Advective Flux of Dissolved Organic Phosphorus
ADVyTr04| 15 |VV   207MR      |mol P/m.m^3/s   |Meridional Advective Flux of Dissolved Organic Phosphorus
DFrETr04| 15 |WM      LR      |mol P/m.m^3/s   |Vertical Diffusive Flux of Dissolved Organic Phosphorus (Explicit part)
DIFxTr04| 15 |UU   211MR      |mol P/m.m^3/s   |Zonal      Diffusive Flux of Dissolved Organic Phosphorus
DIFyTr04| 15 |VV   210MR      |mol P/m.m^3/s   |Meridional Diffusive Flux of Dissolved Organic Phosphorus
DFrITr04| 15 |WM      LR      |mol P/m.m^3/s   |Vertical Diffusive Flux of Dissolved Organic Phosphorus (Implicit part)
TRAC05  | 15 |SM P    MR      |mol O/m         |Mass-Weighted Dissolved Oxygen
UTRAC05 | 15 |UU   215MR      |mol O/m.m/s     |Zonal Mass-Weighted Transp of Dissolved Oxygen
VTRAC05 | 15 |VV   214MR      |mol O/m.m/s     |Merid Mass-Weighted Transp of Dissolved Oxygen
WTRAC05 | 15 |WM      MR      |mol O/m.m/s     |Vert  Mass-Weighted Transp of Dissolved Oxygen
ADVrTr05| 15 |WM      LR      |mol O/m.m^3/s   |Vertical   Advective Flux of Dissolved Oxygen
ADVxTr05| 15 |UU   219MR      |mol O/m.m^3/s   |Zonal      Advective Flux of Dissolved Oxygen
ADVyTr05| 15 |VV   218MR      |mol O/m.m^3/s   |Meridional Advective Flux of Dissolved Oxygen
DFrETr05| 15 |WM      LR      |mol O/m.m^3/s   |Vertical Diffusive Flux of Dissolved Oxygen (Explicit part)
DIFxTr05| 15 |UU   222MR      |mol O/m.m^3/s   |Zonal      Diffusive Flux of Dissolved Oxygen
DIFyTr05| 15 |VV   221MR      |mol O/m.m^3/s   |Meridional Diffusive Flux of Dissolved Oxygen
DFrITr05| 15 |WM      LR      |mol O/m.m^3/s   |Vertical Diffusive Flux of Dissolved Oxygen (Implicit part)

\end{verbatim}
}

\subsubsection{Do's and Don'ts}

\subsubsection{Reference Material}

1	\subsection {PTRACERS Package}
2	\label{sec:pkg:ptracers}
3	\begin{rawhtml}
4	<!-- CMIREDIR:package_ptracers: -->
5	\end{rawhtml}
6
7	\subsubsection {Introduction}
8
9	\subsubsection {Equations}
10
11	\subsubsection {Key subroutines and parameters}
12
13	\subsubsection{PTRACERS Diagnostics}
14	\label{sec:pkg:ptracers:diagnostics}
15
16	{\footnotesize
17	\begin{verbatim}
18
19	------------------------------------------------------------------------
20	<-Name->\|Levs\|<-parsing code->\|<-- Units -->\|<- Tile (max=80c)
21	------------------------------------------------------------------------
22	TRAC01 \| 15 \|SM P MR \|mol C/m \|Mass-Weighted Dissolved Inorganic Carbon
23	UTRAC01 \| 15 \|UU 171MR \|mol C/m.m/s \|Zonal Mass-Weighted Transp of Dissolved Inorganic Carbon
24	VTRAC01 \| 15 \|VV 170MR \|mol C/m.m/s \|Merid Mass-Weighted Transp of Dissolved Inorganic Carbon
25	WTRAC01 \| 15 \|WM MR \|mol C/m.m/s \|Vert Mass-Weighted Transp of Dissolved Inorganic Carbon
26	ADVrTr01\| 15 \|WM LR \|mol C/m.m^3/s \|Vertical Advective Flux of Dissolved Inorganic Carbon
27	ADVxTr01\| 15 \|UU 175MR \|mol C/m.m^3/s \|Zonal Advective Flux of Dissolved Inorganic Carbon
28	ADVyTr01\| 15 \|VV 174MR \|mol C/m.m^3/s \|Meridional Advective Flux of Dissolved Inorganic Carbon
29	DFrETr01\| 15 \|WM LR \|mol C/m.m^3/s \|Vertical Diffusive Flux of Dissolved Inorganic Carbon (Explicit part)
30	DIFxTr01\| 15 \|UU 178MR \|mol C/m.m^3/s \|Zonal Diffusive Flux of Dissolved Inorganic Carbon
31	DIFyTr01\| 15 \|VV 177MR \|mol C/m.m^3/s \|Meridional Diffusive Flux of Dissolved Inorganic Carbon
32	DFrITr01\| 15 \|WM LR \|mol C/m.m^3/s \|Vertical Diffusive Flux of Dissolved Inorganic Carbon (Implicit part)
33	TRAC02 \| 15 \|SM P MR \|mol eq/ \|Mass-Weighted Alkalinity
34	UTRAC02 \| 15 \|UU 182MR \|mol eq/.m/s \|Zonal Mass-Weighted Transp of Alkalinity
35	VTRAC02 \| 15 \|VV 181MR \|mol eq/.m/s \|Merid Mass-Weighted Transp of Alkalinity
36	WTRAC02 \| 15 \|WM MR \|mol eq/.m/s \|Vert Mass-Weighted Transp of Alkalinity
37	ADVrTr02\| 15 \|WM LR \|mol eq/.m^3/s \|Vertical Advective Flux of Alkalinity
38	ADVxTr02\| 15 \|UU 186MR \|mol eq/.m^3/s \|Zonal Advective Flux of Alkalinity
39	ADVyTr02\| 15 \|VV 185MR \|mol eq/.m^3/s \|Meridional Advective Flux of Alkalinity
40	DFrETr02\| 15 \|WM LR \|mol eq/.m^3/s \|Vertical Diffusive Flux of Alkalinity (Explicit part)
41	DIFxTr02\| 15 \|UU 189MR \|mol eq/.m^3/s \|Zonal Diffusive Flux of Alkalinity
42	DIFyTr02\| 15 \|VV 188MR \|mol eq/.m^3/s \|Meridional Diffusive Flux of Alkalinity
43	DFrITr02\| 15 \|WM LR \|mol eq/.m^3/s \|Vertical Diffusive Flux of Alkalinity (Implicit part)
44	TRAC03 \| 15 \|SM P MR \|mol P/m \|Mass-Weighted Phosphate
45	UTRAC03 \| 15 \|UU 193MR \|mol P/m.m/s \|Zonal Mass-Weighted Transp of Phosphate
46	VTRAC03 \| 15 \|VV 192MR \|mol P/m.m/s \|Merid Mass-Weighted Transp of Phosphate
47	WTRAC03 \| 15 \|WM MR \|mol P/m.m/s \|Vert Mass-Weighted Transp of Phosphate
48	ADVrTr03\| 15 \|WM LR \|mol P/m.m^3/s \|Vertical Advective Flux of Phosphate
49	ADVxTr03\| 15 \|UU 197MR \|mol P/m.m^3/s \|Zonal Advective Flux of Phosphate
50	ADVyTr03\| 15 \|VV 196MR \|mol P/m.m^3/s \|Meridional Advective Flux of Phosphate
51	DFrETr03\| 15 \|WM LR \|mol P/m.m^3/s \|Vertical Diffusive Flux of Phosphate (Explicit part)
52	DIFxTr03\| 15 \|UU 200MR \|mol P/m.m^3/s \|Zonal Diffusive Flux of Phosphate
53	------------------------------------------------------------------------
54	<-Name->\|Levs\|<-parsing code->\|<-- Units -->\|<- Tile (max=80c)
55	------------------------------------------------------------------------
56	DIFyTr03\| 15 \|VV 199MR \|mol P/m.m^3/s \|Meridional Diffusive Flux of Phosphate
57	DFrITr03\| 15 \|WM LR \|mol P/m.m^3/s \|Vertical Diffusive Flux of Phosphate (Implicit part)
58	TRAC04 \| 15 \|SM P MR \|mol P/m \|Mass-Weighted Dissolved Organic Phosphorus
59	UTRAC04 \| 15 \|UU 204MR \|mol P/m.m/s \|Zonal Mass-Weighted Transp of Dissolved Organic Phosphorus
60	VTRAC04 \| 15 \|VV 203MR \|mol P/m.m/s \|Merid Mass-Weighted Transp of Dissolved Organic Phosphorus
61	WTRAC04 \| 15 \|WM MR \|mol P/m.m/s \|Vert Mass-Weighted Transp of Dissolved Organic Phosphorus
62	ADVrTr04\| 15 \|WM LR \|mol P/m.m^3/s \|Vertical Advective Flux of Dissolved Organic Phosphorus
63	ADVxTr04\| 15 \|UU 208MR \|mol P/m.m^3/s \|Zonal Advective Flux of Dissolved Organic Phosphorus
64	ADVyTr04\| 15 \|VV 207MR \|mol P/m.m^3/s \|Meridional Advective Flux of Dissolved Organic Phosphorus
65	DFrETr04\| 15 \|WM LR \|mol P/m.m^3/s \|Vertical Diffusive Flux of Dissolved Organic Phosphorus (Explicit part)
66	DIFxTr04\| 15 \|UU 211MR \|mol P/m.m^3/s \|Zonal Diffusive Flux of Dissolved Organic Phosphorus
67	DIFyTr04\| 15 \|VV 210MR \|mol P/m.m^3/s \|Meridional Diffusive Flux of Dissolved Organic Phosphorus
68	DFrITr04\| 15 \|WM LR \|mol P/m.m^3/s \|Vertical Diffusive Flux of Dissolved Organic Phosphorus (Implicit part)
69	TRAC05 \| 15 \|SM P MR \|mol O/m \|Mass-Weighted Dissolved Oxygen
70	UTRAC05 \| 15 \|UU 215MR \|mol O/m.m/s \|Zonal Mass-Weighted Transp of Dissolved Oxygen
71	VTRAC05 \| 15 \|VV 214MR \|mol O/m.m/s \|Merid Mass-Weighted Transp of Dissolved Oxygen
72	WTRAC05 \| 15 \|WM MR \|mol O/m.m/s \|Vert Mass-Weighted Transp of Dissolved Oxygen
73	ADVrTr05\| 15 \|WM LR \|mol O/m.m^3/s \|Vertical Advective Flux of Dissolved Oxygen
74	ADVxTr05\| 15 \|UU 219MR \|mol O/m.m^3/s \|Zonal Advective Flux of Dissolved Oxygen
75	ADVyTr05\| 15 \|VV 218MR \|mol O/m.m^3/s \|Meridional Advective Flux of Dissolved Oxygen
76	DFrETr05\| 15 \|WM LR \|mol O/m.m^3/s \|Vertical Diffusive Flux of Dissolved Oxygen (Explicit part)
77	DIFxTr05\| 15 \|UU 222MR \|mol O/m.m^3/s \|Zonal Diffusive Flux of Dissolved Oxygen
78	DIFyTr05\| 15 \|VV 221MR \|mol O/m.m^3/s \|Meridional Diffusive Flux of Dissolved Oxygen
79	DFrITr05\| 15 \|WM LR \|mol O/m.m^3/s \|Vertical Diffusive Flux of Dissolved Oxygen (Implicit part)
80
81	\end{verbatim}
82	}
83
84	\subsubsection{Do's and Don'ts}
85
86	\subsubsection{Reference Material}
87