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Started obcs docu which is badly needed.

1 heimbach 1.1 \subsection{OBCS: Open boundary conditions for regional modeling}
2    
3     \label{sec:pkg:obcs}
4     \begin{rawhtml}
5     <!-- CMIREDIR:package_obcs: -->
6     \end{rawhtml}
7    
8     Authors: Martin Losch and Patrick Heimbach
9    
10     \subsubsection{Introduction
11     \label{sec:pkg:obcs:intro}}
12    
13    
14    
15     %----------------------------------------------------------------------
16    
17     \subsubsection{OBCS configuration and compiling
18     \label{sec:pkg:kpp:comp}}
19    
20     As with all MITgcm packages, OBCS can be turned on or off
21     at compile time
22     %
23     \begin{itemize}
24     %
25     \item
26     using the \texttt{packages.conf} file by adding \texttt{obcs} to it,
27     %
28     \item
29     or using \texttt{genmake2} adding
30     \texttt{-enable=obcs} or \texttt{-disable=obcs} switches
31     %
32     \item
33     \textit{Required packages and CPP options:} \\
34     %
35     To alternatives are available for prescribing open boundary values,
36     which differ in the way how OB's are treated in time:
37     A simple time-management (e.g. constant in time, or cyclic with
38     fixed fequency) is provided through
39     S/R \texttt{obcs\_external\_fields\_load}.
40     More sophisticated ``real-time'' (i.e. calendar time) management is
41     available through \texttt{obcs\_prescribe\_read}.
42     The latter case requires
43     packages \texttt{cal} and \texttt{exf} to be enabled.
44     %
45     \end{itemize}
46     (see also Section \ref{sect:buildingCode}).
47    
48     Parts of the OBCS code can be enabled or disabled at compile time
49     via CPP preprocessor flags. These options are set in
50     \texttt{OBCS\_OPTIONS.h}. Table \ref{tab:pkg:obcs:cpp} summarizes them.
51    
52     \begin{table}[h!]
53     \centering
54     \label{tab:pkg:obcs:cpp}
55     {\footnotesize
56     \begin{tabular}{|l|l|}
57     \hline
58     \textbf{CPP option} & \textbf{Description} \\
59     \hline \hline
60     \texttt{ALLOW\_OBCS\_NORTH} &
61     enable Northern OB \\
62     \texttt{ALLOW\_OBCS\_SOUTH} &
63     enable Southern OB \\
64     \texttt{ALLOW\_OBCS\_EAST} &
65     enable Eastern OB \\
66     \texttt{ALLOW\_OBCS\_WEST} &
67     enable Western OB \\
68     \hline
69     \texttt{ALLOW\_OBCS\_PRESCRIBE} &
70     enable code for prescribing OB's \\
71     \texttt{ALLOW\_OBCS\_SPONGE} &
72     enable sponge layer code \\
73     \texttt{ALLOW\_OBCS\_BALANCE} &
74     enable code for balancing transports through OB's \\
75     \texttt{ALLOW\_ORLANSKI} &
76     enable Orlanski radiation conditions at OB's \\
77     \hline
78     \end{tabular}
79     }
80     \caption{~}
81     \end{table}
82    
83    
84     %----------------------------------------------------------------------
85    
86     \subsubsection{Run-time parameters
87     \label{sec:pkg:obcs:runtime}}
88    
89     Run-time parameters are set in files
90     \texttt{data.pkg}, \texttt{data.obcs}, and \texttt{data.exf}
91     if ``real-time'' prescription is requested
92     (i.e. package \texttt{exf} enabled).
93     These parameter files are read in S/R
94     \texttt{packages\_readparms.F}, \texttt{obcs\_readparms.F}, and
95     \texttt{exf\_readparms.F}, respectively.
96     Run-time parameters may be broken into 3 categories:
97     (i) switching on/off the package at runtime,
98     (ii) OBCS package flags and parameters,
99     (iii) additional timing flags in \texttt{data.exf}, if selected.
100    
101     \paragraph{Enabling the package}
102     ~ \\
103     %
104     The OBCS package is switched on at runtime by setting
105     \texttt{useOBCS = .TRUE.} in \texttt{data.pkg}.
106    
107     \paragraph{Package flags and parameters}
108     ~ \\
109     %
110     Table \ref{tab:pkg:obcs:runtime_flags} summarizes the
111     runtime flags that are set in \texttt{data.obcs}, and
112     their default values.
113    
114     \begin{table}[h!]
115     \centering
116     \label{tab:pkg:obcs:runtime_flags}
117     {\footnotesize
118     \begin{tabular}{|l|c|l|}
119     \hline
120     \textbf{Flag/parameter} & \textbf{default} & \textbf{Description} \\
121     \hline \hline
122     \multicolumn{3}{|c|}{\textit{basic flags \& parameters} } \\
123     \hline
124     OB\_Jnorth & 0 &
125     Nx-vector of J-indices (w.r.t. Ny) of Northern OB
126     at each I-position (w.r.t. Nx) \\
127     OB\_Jsouth & 0 &
128     Nx-vector of J-indices (w.r.t. Ny) of Southern OB
129     at each I-position (w.r.t. Nx) \\
130     OB\_Ieast & 0 &
131     Ny-vector of I-indices (w.r.t. Nx) of Eastern OB
132     at each J-position (w.r.t. Ny) \\
133     OB\_Iwest & 0 &
134     Ny-vector of I-indices (w.r.t. Nx) of Western OB
135     at each J-position (w.r.t. Ny) \\
136     useOBCSprescribe & \texttt{.FALSE.} &
137     ~ \\
138     useOBCSsponge & \texttt{.FALSE.} &
139     ~ \\
140     useOBCSbalance & \texttt{.FALSE.} &
141     ~ \\
142     OB\textbf{X}\textbf{y}File & ~ &
143     file name of OB field \\
144     ~ & ~ &
145     \textbf{X}: \textbf{N}(orth), \textbf{S}(outh),
146     \textbf{E}(ast), \textbf{W}(est) \\
147     ~ & ~ &
148     \textbf{y}: \textbf{t}(emperature), \textbf{s}(salinity),
149     \textbf{u}(-velocity), \textbf{v}(-velocity) \\
150     \hline
151     \multicolumn{3}{|c|}{\textit{Orlanski parameters} } \\
152     \hline
153     cvelTimeScale & 2000 sec &
154     averaging period for phase speed \\
155     CMAX & 0.45 m/s &
156     maximum allowable phase speed-CFL for AB-II \\
157     CFIX & 0.8 m/s &
158     fixed boundary phase speed \\
159     useFixedCEast & .FALSE. &
160     ~ \\
161     useFixedCWest & .FALSE. &
162     ~ \\
163     \hline
164     \multicolumn{3}{|c|}{\textit{Sponge-layer parameters} } \\
165     \hline
166     spongeThickness & 0 &
167     sponge layer thickness (in \# grid points) \\
168     Urelaxobcsinner & 0 sec &
169     relaxation time scale at the
170     innermost sponge layer point of a meridional OB \\
171     Vrelaxobcsinner & 0 sec &
172     relaxation time scale at the
173     innermost sponge layer point of a zonal OB \\
174     Urelaxobcsbound & 0 sec &
175     relaxation time scale at the
176     outermost sponge layer point of a meridional OB \\
177     Vrelaxobcsbound & 0 sec &
178     relaxation time scale at the
179     outermost sponge layer point of a zonal OB \\
180     \hline
181     \hline
182     \end{tabular}
183     }
184     \caption{~}
185     \end{table}
186    
187    
188    
189     %----------------------------------------------------------------------
190    
191     \subsubsection{Equations and key routines
192     \label{sec:pkg:obcs:equations}}
193    
194     \paragraph{OBCS\_READPARMS:} Setting OB positions \\
195     ~
196    
197     \paragraph{OBCS\_CALC:} ~ \\
198     ~
199    
200     \paragraph{OBCS\_APPLY\_*:} ~ \\
201     ~
202    
203     \paragraph{OBCS\_PRESCRIBE\_READ} Setting OB fields and updates \\
204     %
205     ~
206    
207     \paragraph{OBCS\_SPONGE} Setting sponge layer characteristics \\
208     %
209     ~
210    
211     \paragraph{OBCS\_BALANCE} ~ \\
212     %
213     ~
214    
215     \paragraph{ORLANSKI} Orlanski radiation conditions \\
216     %
217     ~
218    
219     \paragraph{OB's with nonlinear free surface} ~ \\
220     %
221     ~
222    
223    
224     %----------------------------------------------------------------------
225    
226     \subsubsection{Flow chart
227     \label{sec:pkg:obcs:flowchart}}
228    
229    
230     {\footnotesize
231     \begin{verbatim}
232    
233     C !CALLING SEQUENCE:
234     c ...
235    
236     \end{verbatim}
237     }
238    
239     %----------------------------------------------------------------------
240    
241     \subsubsection{OBCS diagnostics
242     \label{sec:pkg:obcs:diagnostics}}
243    
244     Diagnostics output is available via the diagnostics package
245     (see Section \ref{sec:pkg:diagnostics}).
246     Available output fields are summarized in
247     Table \ref{tab:pkg:obcs:diagnostics}.
248    
249     \begin{table}[h!]
250     \centering
251     \label{tab:pkg:obcs:diagnostics}
252     {\footnotesize
253     \begin{verbatim}
254     ------------------------------------------------------
255     <-Name->|Levs|grid|<-- Units -->|<- Tile (max=80c)
256     ------------------------------------------------------
257    
258     \end{verbatim}
259     }
260     \caption{~}
261     \end{table}
262    
263     %----------------------------------------------------------------------
264    
265     \subsubsection{Reference experiments}
266    
267    
268    
269     %----------------------------------------------------------------------
270    
271     \subsubsection{References}
272    

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