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\subsection{KL10: Vertical Mixing Due to Breaking Internal Waves} |
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\label{sec:pkg:kl10} |
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\begin{rawhtml} |
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<!-- CMIREDIR:package_kl10: --> |
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\end{rawhtml} |
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\begin{center} |
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(in directory: \file{pkg/kl10/}) |
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\end{center} |
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|
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Authors: Jody M. Klymak |
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|
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\subsubsection{Introduction |
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\label{sec:pkg:kl10:intro}} |
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|
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The \citet[][KL10]{klymaklegg10} parameterization for breaking internal waves is meant to represent mixing in the ocean ``interior'' due to convective instability. Many mixing schemes in the presence of unstable stratification simply turn on an arbitrarily large diffusivity and viscosity in the overturning region. This assumes the fluid completely mixes, which is probably not a terrible assumption, but it also makes estimating the turbulence dissipation rate in the overturning region meaningless. |
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The KL10 scheme overcomes this limitation by estimating the viscosity and diffusivity from a combination of the Ozmidov relation and the Osborn relation, assuming a turbulent Prandtl number of one. The Ozmidov relation says that outer scale of turbulence in an overturn will scale with the strength of the turbulence $\epsilon$, and the stratification $N$, as |
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\begin{equation} |
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\label{eq:pkg:kl10:Lo} |
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L_O^2 \approx \epsilon N^{-3}. |
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\end{equation} |
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The Osborn relation relates the strength of the dissipation to the vertical diffusivity as |
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\begin{equation} |
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K_{v}=\Gamma \epsilon N^{-2}, |
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\end{equation} |
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where $\Gamma\approx 0.2$ is the mixing ratio of buoyancy flux to thermal dissipation due to the turbulence. Combining the two gives us |
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\begin{equation} |
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K_{v} \approx \Gamma L_O^2 N. |
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\end{equation} |
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|
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The ocean turbulence community often approximates the Ozmidov scale by the root-mean-square of the Thorpe displacement, $\delta_z$, in an overturn \citep{thorpe77}. |
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The Thorpe displacement is the distance one would have to move a water parcel for the water column to be stable, and is readily measured in a measured profile by sorting the profile and tracking how far each parcel moves during the sorting procedure. |
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This method gives an imperfect estimate of the turbulence, but it has been found to agree on average over a large range of overturns \citep{wesson94,seimgregg94,moum96}. |
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The algorithm coded here is a slight simplification of the usual Thorpe method for estimating turbulence in overturning regions. Usually, overturns are identified and $N$ is averaged over the overturn. Here, instead we estimate |
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\begin{equation} |
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K_{v}(z) \approx \Gamma \delta_z^2\, N_s(z). |
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\end{equation} |
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where $N_s(z)$ is the local sorted stratification. This saves complexity in the code and adds a slight inaccuracy, but we don't believe is biased. |
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We assume a turbulent Prandtl number of 1, so $A_v=K_{v}$. |
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We also calculate and output a turbulent dissipation from this scheme. We do not simply evaluate the overturns for $\epsilon$ using (\ref{eq:pkg:kl10:Lo}). Instead we compute the vertical shear terms that the viscosity is acting on: |
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\begin{equation} |
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\epsilon_v = A_v \left(\left(\frac{\partial u}{\partial z}\right)^2 + \left(\frac{\partial v}{\partial z}\right)^2 \right). |
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\end{equation} |
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There are straightforward caveats to this approach, covered in \citet{klymaklegg10}. |
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\begin{itemize} |
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\item If your resolution is too low to resolve the breaking internal waves, you won't have any turbulence. |
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\item If the model resolution is too high, the estimates of $\epsilon_v$ will start to be exaggerated, particularly if the run in non-hydrostatic. That is because there will be significant shear at small scales that represents the turbulence being parameterized in the scheme. At very high resolutions direct numerical simulation or more sophisticated large-eddy schemes should be used. |
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\item We find that grid cells of approximately 10 to 1 aspect ratio are a good rule of thumb for achieving good results are usual oceanic scales. For a site like the Hawaiian Ridge, and Luzon Strait, this means 10-m vertical resolusion and approximately 100-m horizontal. The 10-m resolution can be relaxed if the stratification drops, and we often WKB-stretch the grid spacing with depth. |
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\item The dissipation estimate is useful for pinpoiting the location of turbulence, but again, is grid size dependent to some extent, and should be treated with a grain of salt. It will also not include any numerical dissipation such as you may find with higher order advection schemes. |
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\end{itemize} |
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\subsubsection{KL10 configuration and compiling |
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\label{sec:pkg:kl10:comp}} |
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As with all MITgcm packages, KL10 can be turned on or off at compile time |
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% |
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\begin{itemize} |
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% |
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\item |
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using the \texttt{packages.conf} file by adding \texttt{kl10} to it, |
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% |
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\item |
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or using \texttt{genmake2} adding |
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\texttt{-enable=kl10} or \texttt{-disable=kl10} switches |
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% |
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\item |
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\textit{Required packages and CPP options:} \\ |
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No additional packages are required. |
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% |
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\end{itemize} |
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(see Section \ref{sec:buildingCode}). |
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|
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KL10 has no compile-time options (\texttt{KL10\_OPTIONS.h} is empty). |
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\subsubsection{Run-time parameters |
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\label{sec:pkg:kl10:runtime}} |
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|
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Run-time parameters are set in files |
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\texttt{data.pkg} and \texttt{data.kl10} |
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which are read in \texttt{kl10\_readparms.F}. |
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Run-time parameters may be broken into 3 categories: |
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(i) switching on/off the package at runtime, |
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(ii) required MITgcm flags, |
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(iii) package flags and parameters. |
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|
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\paragraph{Enabling the package} |
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~ \\ |
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% |
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The KL10 package is switched on at runtime by setting |
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\texttt{useKL10 = .TRUE.} in \texttt{data.pkg}. |
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|
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\paragraph{Required MITgcm flags} |
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~ \\ |
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% |
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The following flags/parameters of the MITgcm dynamical |
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kernel need to be set in conjunction with KL10: |
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|
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\begin{tabular}{ll} |
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\texttt{implicitViscosity = .TRUE.} & enable implicit vertical viscosity \\ |
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\texttt{implicitDiffusion = .TRUE.} & enable implicit vertical diffusion \\ |
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\end{tabular} |
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|
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\paragraph{Package flags and parameters} |
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~ \\ |
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% |
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Table \ref{tab:pkg:kl10:runtime_flags} summarizes the |
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runtime flags that are set in \texttt{data.kl10}, and |
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their default values. |
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|
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\begin{table}[!ht] |
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\centering |
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\label{tab:pkg:kl10:runtime_flags} |
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{\footnotesize |
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\begin{tabular}{|l|c|l|} |
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\hline |
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\textbf{Flag/parameter} & \textbf{default} & \textbf{Description} \\ |
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\hline \hline |
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\multicolumn{3}{|c|}{\textit{I/O related parameters} } \\ |
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\hline |
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KLviscMax & 300\ $\mathrm{m^2\,s^{-1}}$ & |
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Maximum viscosity the scheme will ever give (useful for stability) \\ |
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KLdumpFreq & \texttt{dumpFreq} & |
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Dump frequency of KL10 field snapshots \\ |
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KLtaveFreq & \texttt{taveFreq} & |
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Averaging and dump frequency of KL10 fields \\ |
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KLwriteState & \texttt{.FALSE.} & |
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write KL10 state to file \\ |
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\hline |
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\end{tabular} |
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} |
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\caption{KL10 runtime parameters} |
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\end{table} |
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\subsubsection{Equations and key routines |
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\label{sec:kl10:kpp:equations}} |
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\paragraph{KL10\_CALC:} Top-level routine. Calculates viscosity and diffusivity on the grid cell centers. Note that the runtime parameters \texttt{viscAz} and \texttt{diffKzT} act as minimum viscosity and diffusivities. So if there are no overturns (or they are weak) then these will be returned. |
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\paragraph{KL10\_CALC\_VISC:} Calculates viscosity on the W and S grid faces for U and V respectively. |
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\paragraph{KL10\_CALC\_DIFF:} Calculates the added diffusion from KL10. |
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\subsubsection{KL10 diagnostics |
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\label{sec:pkg:kl10:diagnostics}} |
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|
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Diagnostics output is available via the diagnostics package |
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(see Section \ref{sec:pkg:diagnostics}). |
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Available output fields are summarized here: |
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|
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\begin{verbatim} |
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------------------------------------------------------ |
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<-Name->|Levs|grid|<-- Units -->|<- Tile (max=80c) |
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------------------------------------------------------ |
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KLviscAr| Nr |SM |m^2/s |KL10 vertical eddy viscosity coefficient |
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KLdiffKr| Nr |SM |m^2/s |Vertical diffusion coefficient for salt, temperature, & tracers |
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KLeps | Nr |SM |m^3/s^3 | Turbulence dissipation estimate. |
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\end{verbatim} |
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%---------------------------------------------------------------------- |
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subsubsection{Reference experiments} |
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internal\_wavekl10: |
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%---------------------------------------------------------------------- |
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\subsubsection{References} |
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|
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Klymak and Legg, 2010, \emph{Oc.\ Modell.}. |
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\subsubsection{Experiments and tutorials that use KL10} |
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\label{sec:pkg:kl10:experiments} |
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|
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\begin{itemize} |
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\item{Modified Internal Wave experiment, in internal\_wave verification directory } |
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\end{itemize} |
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