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clean-up latex built: (remove multiple definition of label; fix missing reference; replace non-standard latex stuff; ...)
changed for new directory path: s/input{part6\//input{s_phys_pkgs\/text\//g /\\includegraphics.*{part6\//s/{part6\//{s_phys_pkgs\/figs\//g /\\epsfbox.*{part6\//s/{part6\//{s_phys_pkgs\/figs\//g /\\epsfig.*{.*part6\//s/part6\//s_phys_pkgs\/figs\//g
added references
Rename files, connect packages and epxeriments that use them.
add footnotesize so the diagnostics lists are readable in the pdf
Adding lists of available diagnostics
refer to the model uniformly as "MITgcm" and treat it as a proper noun
Add description of key routines
Fix hiccups in latex step - add curly braks
Add more generalization and more details to gridalt section - still need doc of routines
Reorganization of chap 6 and 7 -- move some tex files, demote many sections in section hierarchy
Add fizhi diag description to fizhi.tex, add gridalt.tex to part6, start fixing diag
o add HTML reference tags so that URLs are more permanent and legible o update MNC
Documentation for gridalt
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