/[MITgcm]/manual/s_overview/text/manual.tex

Diff of /manual/s_overview/text/manual.tex

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-revision 1.26 by edhill,
Wed Jun 28 15:22:13 2006 UTC
+revision 1.29 by jmc,
Mon Aug 30 23:09:21 2010 UTC
 Line 61 
 hydrodynamical kernel is used to drive f
  models - see fig \ref{fig:onemodel}
  %% CNHbegin
- \input{part1/one_model_figure}
+ \input{s_overview/text/one_model_figure}
  %% CNHend
  \item it has a non-hydrostatic capability and so can be used to study both
  small-scale and large scale processes - see fig \ref{fig:all-scales}
  %% CNHbegin
- \input{part1/all_scales_figure}
+ \input{s_overview/text/all_scales_figure}
  %% CNHend
  \item finite volume techniques are employed yielding an intuitive
 Line 76 
 discretization and support for the treat
  orthogonal curvilinear grids and shaved cells - see fig \ref{fig:finite-volumes}
  %% CNHbegin
- \input{part1/fvol_figure}
+ \input{s_overview/text/fvol_figure}
  %% CNHend
  \item tangent linear and adjoint counterparts are automatically maintained
 Line 87 
 studies.
  computational platforms.
  \end{itemize}
  Key publications reporting on and charting the development of the model are
- \cite{hill:95,marshall:97a,marshall:97b,adcroft:97,marshall:98,adcroft:99,hill:99,maro-eta:99,adcroft:04a,adcroft:04b,marshall:04}:
+ \cite{hill:95,marshall:97a,marshall:97b,adcroft:97,mars-eta:98,adcroft:99,hill:99,maro-eta:99,adcroft:04a,adcroft:04b,marshall:04}
+ (an overview on the model formulation can also be found in \cite{adcroft:04c}):
  \begin{verbatim}
  Hill, C. and J. Marshall, (1995)
-Line 175 
 in Held and Suarez; 1994 designed to tes
+Line 177 
 in Held and Suarez; 1994 designed to tes
  there are no mountains or land-sea contrast.
  %% CNHbegin
- \input{part1/cubic_eddies_figure}
+ \input{s_overview/text/cubic_eddies_figure}
  %% CNHend
  As described in Adcroft (2001), a `cubed sphere' is used to discretize the
-Line 191 
 cube-sphere grid and the flow calculated
+Line 193 
 cube-sphere grid and the flow calculated
  latitude-longitude grid. Both grids are supported within the model.
  %% CNHbegin
- \input{part1/hs_zave_u_figure}
+ \input{s_overview/text/hs_zave_u_figure}
  %% CNHend
  \subsection{Ocean gyres}
-Line 222 
 transport of warm water northward by the
+Line 224 
 transport of warm water northward by the
  is also clearly visible.
  %% CNHbegin
- \input{part1/atl6_figure}
+ \input{s_overview/text/atl6_figure}
  %% CNHend
-Line 244 
 Figure \ref{fig:large-scale-circ} (botto
+Line 246 
 Figure \ref{fig:large-scale-circ} (botto
  circulation of the global ocean in Sverdrups.
  %%CNHbegin
- \input{part1/global_circ_figure}
+ \input{s_overview/text/global_circ_figure}
  %%CNHend
  \subsection{Convection and mixing over topography}
-Line 267 
 strong, and replaced by lateral entrainm
+Line 269 
 strong, and replaced by lateral entrainm
  instability of the along-slope current.
  %%CNHbegin
- \input{part1/convect_and_topo}
+ \input{s_overview/text/convect_and_topo}
  %%CNHend
  \subsection{Boundary forced internal waves}
-Line 289 
 using MITgcm's finite volume spatial dis
+Line 291 
 using MITgcm's finite volume spatial dis
  nonhydrostatic dynamics.
  %%CNHbegin
- \input{part1/boundary_forced_waves}
+ \input{s_overview/text/boundary_forced_waves}
  %%CNHend
  \subsection{Parameter sensitivity using the adjoint of MITgcm}
-Line 312 
 deep water for the thermohaline circulat
+Line 314 
 deep water for the thermohaline circulat
  yields sensitivities to all other model parameters.
  %%CNHbegin
- \input{part1/adj_hf_ocean_figure}
+ \input{s_overview/text/adj_hf_ocean_figure}
  %%CNHend
  \subsection{Global state estimation of the ocean}
-Line 333 
 consistency with altimetric and in-situ
+Line 335 
 consistency with altimetric and in-situ
 -1997.
  %% CNHbegin
- \input{part1/assim_figure}
+ \input{s_overview/text/assim_figure}
  %% CNHend
  \subsection{Ocean biogeochemical cycles}
-Line 353 
 $\frac{1}{3}^{\circ}\times\frac{1}{3}^{\
+Line 355 
 $\frac{1}{3}^{\circ}\times\frac{1}{3}^{\
  shown).
  %%CNHbegin
- \input{part1/biogeo_figure}
+ \input{s_overview/text/biogeo_figure}
  %%CNHend
  \subsection{Simulations of laboratory experiments}
-Line 371 
 arrested by its instability in a process
+Line 373 
 arrested by its instability in a process
  stratification of the ACC.
  %%CNHbegin
- \input{part1/lab_figure}
+ \input{s_overview/text/lab_figure}
  %%CNHend
  % $Header$
-Line 394 
 and height, $z$, if we are modeling the
+Line 396 
 and height, $z$, if we are modeling the
  \ref{fig:isomorphic-equations}).
  %%CNHbegin
- \input{part1/zandpcoord_figure.tex}
+ \input{s_overview/text/zandpcoord_figure.tex}
  %%CNHend
  The state of the fluid at any time is characterized by the distribution of
-Line 408 
 kinematic boundary conditions can be app
+Line 410 
 kinematic boundary conditions can be app
  see figure \ref{fig:zandp-vert-coord}.
  %%CNHbegin
- \input{part1/vertcoord_figure.tex}
+ \input{s_overview/text/vertcoord_figure.tex}
  %%CNHend
  \begin{equation}
-Line 659 
 which, for convenience, are written out
+Line 661 
 which, for convenience, are written out
  \subsection{Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic and
  Non-hydrostatic forms}
+ \label{sec:all_hydrostatic_forms}
  \begin{rawhtml}
  <!-- CMIREDIR:non_hydrostatic: -->
  \end{rawhtml}
-Line 767 
 Grad and div operators in spherical coor
+Line 770 
 Grad and div operators in spherical coor
  OPERATORS.
  %%CNHbegin
- \input{part1/sphere_coord_figure.tex}
+ \input{s_overview/text/sphere_coord_figure.tex}
  %%CNHend
  \subsubsection{Shallow atmosphere approximation}
-Line 888 
 stepping forward the horizontal momentum
+Line 891 
 stepping forward the horizontal momentum
  stepping forward the vertical momentum equation.
  %%CNHbegin
- \input{part1/solution_strategy_figure.tex}
+ \input{s_overview/text/solution_strategy_figure.tex}
  %%CNHend
  There is no penalty in implementing \textbf{QH} over \textbf{HPE} except, of

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