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\section{Introduction} |
\section{Introduction} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:innovations --> |
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\end{rawhtml} |
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\subsection{Global atmosphere: `Held-Suarez' benchmark} |
\subsection{Global atmosphere: `Held-Suarez' benchmark} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:atmospheric_example --> |
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\end{rawhtml} |
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\subsection{Ocean gyres} |
\subsection{Ocean gyres} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:oceanic_example --> |
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\begin{rawhtml} |
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Baroclinic instability is a ubiquitous process in the ocean, as well as the |
Baroclinic instability is a ubiquitous process in the ocean, as well as the |
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\subsection{Global ocean circulation} |
\subsection{Global ocean circulation} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:global_ocean_circulation --> |
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\end{rawhtml} |
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Figure \ref{fig:large-scale-circ} (top) shows the pattern of ocean currents at |
Figure \ref{fig:large-scale-circ} (top) shows the pattern of ocean currents at |
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\subsection{Convection and mixing over topography} |
\subsection{Convection and mixing over topography} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:mixing_over_topography --> |
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\end{rawhtml} |
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\subsection{Boundary forced internal waves} |
\subsection{Boundary forced internal waves} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:boundary_forced_internal_waves --> |
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\end{rawhtml} |
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The unique ability of MITgcm to treat non-hydrostatic dynamics in the |
The unique ability of MITgcm to treat non-hydrostatic dynamics in the |
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\subsection{Parameter sensitivity using the adjoint of MITgcm} |
\subsection{Parameter sensitivity using the adjoint of MITgcm} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:parameter_sensitivity --> |
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\end{rawhtml} |
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Forward and tangent linear counterparts of MITgcm are supported using an |
Forward and tangent linear counterparts of MITgcm are supported using an |
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\subsection{Global state estimation of the ocean} |
\subsection{Global state estimation of the ocean} |
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\begin{rawhtml} |
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<!-- CMIREDIR:global_state_estimation --> |
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\subsection{Ocean biogeochemical cycles} |
\subsection{Ocean biogeochemical cycles} |
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\begin{rawhtml} |
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MITgcm is being used to study global biogeochemical cycles in the ocean. For |
MITgcm is being used to study global biogeochemical cycles in the ocean. For |
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\subsection{Simulations of laboratory experiments} |
\subsection{Simulations of laboratory experiments} |
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\begin{rawhtml} |
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<!-- CMIREDIR:classroom_exp --> |
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\end{rawhtml} |
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Figure \ref{fig:lab-simulation} shows MITgcm being used to simulate a |
Figure \ref{fig:lab-simulation} shows MITgcm being used to simulate a |
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\section{Continuous equations in `r' coordinates} |
\section{Continuous equations in `r' coordinates} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:z-p_isomorphism --> |
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\end{rawhtml} |
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To render atmosphere and ocean models from one dynamical core we exploit |
To render atmosphere and ocean models from one dynamical core we exploit |
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\input{part1/vertcoord_figure.tex} |
\input{part1/vertcoord_figure.tex} |
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%%CNHend |
%%CNHend |
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\begin{equation*} |
\begin{equation} |
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\frac{D\vec{\mathbf{v}_{h}}}{Dt}+\left( 2\vec{\Omega}\times \vec{\mathbf{v}} |
\frac{D\vec{\mathbf{v}_{h}}}{Dt}+\left( 2\vec{\Omega}\times \vec{\mathbf{v}} |
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\right) _{h}+\mathbf{\nabla }_{h}\phi =\mathcal{F}_{\vec{\mathbf{v}_{h}}} |
\right) _{h}+\mathbf{\nabla }_{h}\phi =\mathcal{F}_{\vec{\mathbf{v}_{h}}} |
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\text{ horizontal mtm} \label{eq:horizontal_mtm} |
\text{ horizontal mtm} \label{eq:horizontal_mtm} |
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\end{equation*} |
\end{equation} |
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\begin{equation} |
\begin{equation} |
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\frac{D\dot{r}}{Dt}+\widehat{k}\cdot \left( 2\vec{\Omega}\times \vec{\mathbf{ |
\frac{D\dot{r}}{Dt}+\widehat{k}\cdot \left( 2\vec{\Omega}\times \vec{\mathbf{ |
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\subsection{Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic and |
\subsection{Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic and |
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Non-hydrostatic forms} |
Non-hydrostatic forms} |
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\begin{rawhtml} |
\begin{rawhtml} |
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<!-- CMIREDIR:non_hydrostatic --> |
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\end{rawhtml} |
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\phi (x,y,r)=\phi _{s}(x,y)+\phi _{hyd}(x,y,r)+\phi _{nh}(x,y,r) |
\phi (x,y,r)=\phi _{s}(x,y)+\phi _{hyd}(x,y,r)+\phi _{nh}(x,y,r) |
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\label{eq:phi-split} |
\label{eq:phi-split} |
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\end{equation} |
\end{equation} |
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and write eq(\ref{eq:incompressible}) in the form: |
%and write eq(\ref{eq:incompressible}) in the form: |
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% ^- this eq is missing (jmc) ; replaced with: |
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and write eq( \ref{eq:horizontal_mtm}) in the form: |
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\begin{equation} |
\begin{equation} |
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\frac{\partial \vec{\mathbf{v}_{h}}}{\partial t}+\mathbf{\nabla }_{h}\phi |
\frac{\partial \vec{\mathbf{v}_{h}}}{\partial t}+\mathbf{\nabla }_{h}\phi |