| 1 | 
\newpage | 
| 2 | 
 | 
| 3 | 
\begin{table} | 
| 4 | 
%\hspace*{-1.5in} | 
| 5 | 
\begin{tabular}{lllc} | 
| 6 | 
 | 
| 7 | 
  \textbf{Name}  &  \textbf{value}   | 
| 8 | 
    &  \textbf{Description}   &  \textbf{Reference}  \\ | 
| 9 | 
  & & & \\ | 
| 10 | 
 | 
| 11 | 
   buoyancyRelation   &    | 
| 12 | 
    &   buoyancyRelation = OCEANIC | 
| 13 | 
    &  %---ref--- | 
| 14 | 
    \\ | 
| 15 | 
   fluidIsAir    &                     F | 
| 16 | 
    &   fluid major constituent is Air  | 
| 17 | 
    &  %---ref--- | 
| 18 | 
    \\ | 
| 19 | 
   fluidIsWater  &                     T | 
| 20 | 
    &   fuild major constituent is Water  | 
| 21 | 
    &  %---ref--- | 
| 22 | 
    \\ | 
| 23 | 
   usingPCoords   &                     F | 
| 24 | 
    &   use p (or p | 
| 25 | 
    &  %---ref--- | 
| 26 | 
    \\ | 
| 27 | 
   usingZCoords   &                     T | 
| 28 | 
    &   use z (or z | 
| 29 | 
    &  %---ref--- | 
| 30 | 
    \\ | 
| 31 | 
   tRef   &      2.0E+01 at K= top | 
| 32 | 
    &   Reference temperature profile ( oC or K )  | 
| 33 | 
    &  %---ref--- | 
| 34 | 
    \\ | 
| 35 | 
   sRef   &      3.0E+01  at K= top | 
| 36 | 
    &   Reference salinity profile ( psu )  | 
| 37 | 
    &  %---ref--- | 
| 38 | 
    \\ | 
| 39 | 
   viscAh   &                   0.0E+00 | 
| 40 | 
    &   Lateral eddy viscosity ( $m^2/s$ )  | 
| 41 | 
    &  %---ref--- | 
| 42 | 
    \\ | 
| 43 | 
   viscAhMax   &                   1.0E+21 | 
| 44 | 
    &   Maximum lateral eddy viscosity ( $m^2/s$ )  | 
| 45 | 
    &  %---ref--- | 
| 46 | 
    \\ | 
| 47 | 
   viscAhGrid   &                   0.0E+00 | 
| 48 | 
    &   Grid dependent lateral eddy viscosity ( non-dim. )  | 
| 49 | 
    &  %---ref--- | 
| 50 | 
    \\ | 
| 51 | 
   useFullLeith   &                     F | 
| 52 | 
    &   Use Full Form of Leith Viscosity on/off flag | 
| 53 | 
    &  %---ref--- | 
| 54 | 
    \\ | 
| 55 | 
   useStrainTensionVisc   &                     F | 
| 56 | 
    &   Use StrainTension Form of Viscous Operator on/off flag | 
| 57 | 
    &  %---ref--- | 
| 58 | 
    \\ | 
| 59 | 
   useAreaViscLength   &                     F | 
| 60 | 
    &   Use area for visc length instead of geom. mean | 
| 61 | 
    &  %---ref--- | 
| 62 | 
    \\ | 
| 63 | 
   viscC2leith   &                   0.0E+00 | 
| 64 | 
    &   Leith harmonic visc. factor (on grad(vort),non-dim.)  | 
| 65 | 
    &  %---ref--- | 
| 66 | 
    \\ | 
| 67 | 
   viscC2leithD   &                   0.0E+00 | 
| 68 | 
    &   Leith harmonic viscosity factor (on grad(div),non-dim.)  | 
| 69 | 
    &  %---ref--- | 
| 70 | 
    \\ | 
| 71 | 
   viscC2smag   &                   0.0E+00 | 
| 72 | 
    &   Smagorinsky harmonic viscosity factor (non-dim.)  | 
| 73 | 
    &  %---ref--- | 
| 74 | 
    \\ | 
| 75 | 
   viscA4   &                   0.0E+00 | 
| 76 | 
    &   Lateral biharmonic viscosity ( $m^4/s$ )  | 
| 77 | 
    &  %---ref--- | 
| 78 | 
    \\ | 
| 79 | 
   viscA4Max   &                   1.0E+21 | 
| 80 | 
    &   Maximum biharmonic viscosity ( $m^2/s$ )  | 
| 81 | 
    &  %---ref--- | 
| 82 | 
    \\ | 
| 83 | 
   viscA4Grid   &                   0.0E+00 | 
| 84 | 
    &   Grid dependent biharmonic viscosity ( non-dim. )  | 
| 85 | 
    &  %---ref--- | 
| 86 | 
    \\ | 
| 87 | 
   viscC4leith   &                   0.0E+00 | 
| 88 | 
    &   Leith biharm viscosity factor (on grad(vort), non-dim.)  | 
| 89 | 
    &  %---ref--- | 
| 90 | 
    \\ | 
| 91 | 
   viscC4leithD   &                   0.0E+00 | 
| 92 | 
    &   Leith biharm viscosity factor (on grad(div), non-dim.)  | 
| 93 | 
    &  %---ref--- | 
| 94 | 
    \\ | 
| 95 | 
   viscC4Smag   &                   0.0E+00 | 
| 96 | 
    &   Smagorinsky biharm viscosity factor (non-dim)  | 
| 97 | 
    &  %---ref--- | 
| 98 | 
    \\ | 
| 99 | 
   no\_slip\_sides   &                     T | 
| 100 | 
    &   Viscous BCs: No-slip sides  | 
| 101 | 
    &  %---ref--- | 
| 102 | 
    \\ | 
| 103 | 
   sideDragFactor   &                   2.0E+00 | 
| 104 | 
    &   side-drag scaling factor (non-dim)  | 
| 105 | 
    &  %---ref--- | 
| 106 | 
    \\ | 
| 107 | 
   viscAr   &                   0.0E+00 | 
| 108 | 
    &   Vertical eddy viscosity ( units of $r^2/s$ )  | 
| 109 | 
    &  %---ref--- | 
| 110 | 
    \\ | 
| 111 | 
   no\_slip\_bottom   &                     T | 
| 112 | 
    &   Viscous BCs: No-slip bottom  | 
| 113 | 
    &  %---ref--- | 
| 114 | 
    \\ | 
| 115 | 
   bottomDragLinear   &                   0.0E+00 | 
| 116 | 
    &   linear bottom-drag coefficient ( m/s )  | 
| 117 | 
    &  %---ref--- | 
| 118 | 
    \\ | 
| 119 | 
   bottomDragQuadratic   &                   0.0E+00 | 
| 120 | 
    &   quadratic bottom-drag coeff. ( 1 )  | 
| 121 | 
    &  %---ref--- | 
| 122 | 
    \\ | 
| 123 | 
   diffKhT   &                   0.0E+00 | 
| 124 | 
    &   Laplacian diffusion of heat laterally ( $m^2/s$ )  | 
| 125 | 
    &  %---ref--- | 
| 126 | 
    \\ | 
| 127 | 
   diffK4T   &                   0.0E+00 | 
| 128 | 
    &   Bihaarmonic diffusion of heat laterally ( $m^4/s$ )  | 
| 129 | 
    &  %---ref--- | 
| 130 | 
    \\ | 
| 131 | 
   diffKhS   &                   0.0E+00 | 
| 132 | 
    &   Laplacian diffusion of salt laterally ( $m^2/s$ )  | 
| 133 | 
    &  %---ref--- | 
| 134 | 
    \\ | 
| 135 | 
   diffK4S   &                   0.0E+00 | 
| 136 | 
    &   Bihaarmonic diffusion of salt laterally ( $m^4/s$ )  | 
| 137 | 
    &  %---ref--- | 
| 138 | 
    \\ | 
| 139 | 
   diffKrNrT   &      0.0E+00 at K= top | 
| 140 | 
    &   vertical profile of vertical diffusion of Temp ( $m^2/s$ ) | 
| 141 | 
    &  %---ref--- | 
| 142 | 
    \\ | 
| 143 | 
   diffKrNrS   &      0.0E+00 at K= top | 
| 144 | 
    &   vertical profile of vertical diffusion of Salt ( $m^2/s$ ) | 
| 145 | 
    &  %---ref--- | 
| 146 | 
    \\ | 
| 147 | 
   diffKrBL79surf   &                   0.0E+00 | 
| 148 | 
    &   Surface diffusion for Bryan and Lewis 1979 ( $m^2/s$ )  | 
| 149 | 
    &  %---ref--- | 
| 150 | 
    \\ | 
| 151 | 
   diffKrBL79deep   &                   0.0E+00 | 
| 152 | 
    &   Deep diffusion for Bryan and Lewis 1979 ( $m^2/s$ )  | 
| 153 | 
    &  %---ref--- | 
| 154 | 
    \\ | 
| 155 | 
   diffKrBL79scl   &                   2.0E+02 | 
| 156 | 
    &   Depth scale for Bryan and Lewis 1979 ( m )  | 
| 157 | 
    &  %---ref--- | 
| 158 | 
    \\ | 
| 159 | 
   diffKrBL79Ho   &                  -2.0E+03 | 
| 160 | 
    &   Turning depth for Bryan and Lewis 1979 ( m )  | 
| 161 | 
    &  %---ref--- | 
| 162 | 
    \\ | 
| 163 | 
   eosType   &  LINEAR  | 
| 164 | 
    &   Equation of State | 
| 165 | 
    &  %---ref--- | 
| 166 | 
    \\ | 
| 167 | 
   tAlpha   &                   2.0E-04 | 
| 168 | 
    &   Linear EOS thermal expansion coefficient ( 1/oC )  | 
| 169 | 
    &  %---ref--- | 
| 170 | 
    \\ | 
| 171 | 
\end{tabular} | 
| 172 | 
\end{table} | 
| 173 | 
 | 
| 174 | 
\newpage | 
| 175 | 
\begin{table} | 
| 176 | 
%\hspace*{-1.5in} | 
| 177 | 
\begin{tabular}{lllc} | 
| 178 | 
 | 
| 179 | 
  \textbf{Name}  &  \textbf{value}   | 
| 180 | 
    &  \textbf{Description}   &  \textbf{Reference}  \\ | 
| 181 | 
  & & & \\ | 
| 182 | 
   sBeta   &                   7.4E-04 | 
| 183 | 
    &   Linear EOS haline contraction coef ( 1/psu )  | 
| 184 | 
    &  %---ref--- | 
| 185 | 
    \\ | 
| 186 | 
   rhonil   &                   9.998E+02 | 
| 187 | 
    &   Reference density ( $kg/m^3$ )  | 
| 188 | 
    &  %---ref--- | 
| 189 | 
    \\ | 
| 190 | 
   rhoConst   &                   9.998E+02 | 
| 191 | 
    &   Reference density ( $kg/m^3$ )  | 
| 192 | 
    &  %---ref--- | 
| 193 | 
    \\ | 
| 194 | 
   rhoConstFresh   &                   9.998E+02 | 
| 195 | 
    &   Reference density ( $kg/m^3$ )  | 
| 196 | 
    &  %---ref--- | 
| 197 | 
    \\ | 
| 198 | 
   gravity   &                   9.81E+00 | 
| 199 | 
    &   Gravitational acceleration ( $m/s^2$ )  | 
| 200 | 
    &  %---ref--- | 
| 201 | 
    \\ | 
| 202 | 
   gBaro   &                   9.81E+00 | 
| 203 | 
    &   Barotropic gravity ( $m/s^2$ )  | 
| 204 | 
    &  %---ref--- | 
| 205 | 
    \\ | 
| 206 | 
   rotationPeriod   &                   8.6164E+04 | 
| 207 | 
    &   Rotation Period ( s )  | 
| 208 | 
    &  %---ref--- | 
| 209 | 
    \\ | 
| 210 | 
   omega   &                   7.292123516990375E-05 | 
| 211 | 
    &   Angular velocity ( rad/s )  | 
| 212 | 
    &  %---ref--- | 
| 213 | 
    \\ | 
| 214 | 
   f0   &                   1.0E-04 | 
| 215 | 
    &   Reference coriolis parameter ( 1/s )  | 
| 216 | 
    &  %---ref--- | 
| 217 | 
    \\ | 
| 218 | 
   beta   &                   9.999999999999999E-12 | 
| 219 | 
    &   Beta ( 1/(m.s) )  | 
| 220 | 
    &  %---ref--- | 
| 221 | 
    \\ | 
| 222 | 
   freeSurfFac   &                   1.0E+00 | 
| 223 | 
    &   Implicit free surface factor  | 
| 224 | 
    &  %---ref--- | 
| 225 | 
    \\ | 
| 226 | 
   implicitFreeSurface   &                     T | 
| 227 | 
    &   Implicit free surface on/off flag  | 
| 228 | 
    &  %---ref--- | 
| 229 | 
    \\ | 
| 230 | 
   rigidLid   &                     F | 
| 231 | 
    &   Rigid lid on/off flag  | 
| 232 | 
    &  %---ref--- | 
| 233 | 
    \\ | 
| 234 | 
   implicSurfPress   &                   1.0E+00 | 
| 235 | 
    &   Surface Pressure implicit factor (0-1) | 
| 236 | 
    &  %---ref--- | 
| 237 | 
    \\ | 
| 238 | 
   implicDiv2Dflow   &                   1.0E+00 | 
| 239 | 
    &   Barot. Flow Div. implicit factor (0-1) | 
| 240 | 
    &  %---ref--- | 
| 241 | 
    \\ | 
| 242 | 
   exactConserv   &                     F | 
| 243 | 
    &   Exact Volume Conservation on/off flag | 
| 244 | 
    &  %---ref--- | 
| 245 | 
    \\ | 
| 246 | 
   uniformLin\_PhiSurf   &                     T | 
| 247 | 
    &   use uniform Bo\_surf on/off flag | 
| 248 | 
    &  %---ref--- | 
| 249 | 
    \\ | 
| 250 | 
   nonlinFreeSurf   &                         0 | 
| 251 | 
    &   Non-linear Free Surf. options (-1,0,1,2,3) | 
| 252 | 
    &  %---ref--- | 
| 253 | 
    \\ | 
| 254 | 
   hFacInf   &                   2.0E-01 | 
| 255 | 
    &   lower threshold for hFac (nonlinFreeSurf only) | 
| 256 | 
    &  %---ref--- | 
| 257 | 
    \\ | 
| 258 | 
   hFacSup   &                   2.0E+00 | 
| 259 | 
    &   upper threshold for hFac (nonlinFreeSurf only) | 
| 260 | 
    &  %---ref--- | 
| 261 | 
    \\ | 
| 262 | 
   select\_rStar   &                         0 | 
| 263 | 
    &   r | 
| 264 | 
    &  %---ref--- | 
| 265 | 
    \\ | 
| 266 | 
   useRealFreshWaterFlux   &                     F | 
| 267 | 
    &   Real Fresh Water Flux on/off flag | 
| 268 | 
    &  %---ref--- | 
| 269 | 
    \\ | 
| 270 | 
   convertFW2Salt   &                   3.5E+01 | 
| 271 | 
    &   convert F.W. Flux to Salt Flux (-1=use local S) | 
| 272 | 
    &  %---ref--- | 
| 273 | 
    \\ | 
| 274 | 
   use3Dsolver   &                     F | 
| 275 | 
    &   use 3-D pressure solver on/off flag  | 
| 276 | 
    &  %---ref--- | 
| 277 | 
    \\ | 
| 278 | 
   nonHydrostatic   &                     F | 
| 279 | 
    &   Non-Hydrostatic on/off flag  | 
| 280 | 
    &  %---ref--- | 
| 281 | 
    \\ | 
| 282 | 
   nh\_Am2   &                   1.0E+00 | 
| 283 | 
    &   Non-Hydrostatic terms scaling factor  | 
| 284 | 
    &  %---ref--- | 
| 285 | 
    \\ | 
| 286 | 
   quasiHydrostatic   &                     F | 
| 287 | 
    &   Quasi-Hydrostatic on/off flag  | 
| 288 | 
    &  %---ref--- | 
| 289 | 
    \\ | 
| 290 | 
   momStepping   &                     T | 
| 291 | 
    &   Momentum equation on/off flag  | 
| 292 | 
    &  %---ref--- | 
| 293 | 
    \\ | 
| 294 | 
   vectorInvariantMomentum  &                     F | 
| 295 | 
    &   Vector-Invariant Momentum on/off  | 
| 296 | 
    &  %---ref--- | 
| 297 | 
    \\ | 
| 298 | 
   momAdvection   &                     T | 
| 299 | 
    &   Momentum advection on/off flag  | 
| 300 | 
    &  %---ref--- | 
| 301 | 
    \\ | 
| 302 | 
   momViscosity   &                     T | 
| 303 | 
    &   Momentum viscosity on/off flag  | 
| 304 | 
    &  %---ref--- | 
| 305 | 
    \\ | 
| 306 | 
   momImplVertAdv   &                     F | 
| 307 | 
    &   Momentum implicit vert. advection on/off | 
| 308 | 
    &  %---ref--- | 
| 309 | 
    \\ | 
| 310 | 
   implicitViscosity   &                     F | 
| 311 | 
    &   Implicit viscosity on/off flag  | 
| 312 | 
    &  %---ref--- | 
| 313 | 
    \\ | 
| 314 | 
   metricTerms   &                     F | 
| 315 | 
    &   metric-Terms on/off flag  | 
| 316 | 
    &  %---ref--- | 
| 317 | 
    \\ | 
| 318 | 
   useNHMTerms   &                     F | 
| 319 | 
    &   Non-Hydrostatic Metric-Terms on/off  | 
| 320 | 
    &  %---ref--- | 
| 321 | 
    \\ | 
| 322 | 
   useCoriolis   &                     T | 
| 323 | 
    &   Coriolis on/off flag  | 
| 324 | 
    &  %---ref--- | 
| 325 | 
    \\ | 
| 326 | 
   useCDscheme   &                     F | 
| 327 | 
    &   CD scheme on/off flag  | 
| 328 | 
    &  %---ref--- | 
| 329 | 
    \\ | 
| 330 | 
   useJamartWetPoints  &                     F | 
| 331 | 
    &   Coriolis WetPoints method flag  | 
| 332 | 
    &  %---ref--- | 
| 333 | 
    \\ | 
| 334 | 
   useJamartMomAdv  &                     F | 
| 335 | 
    &   V.I. Non-linear terms Jamart flag  | 
| 336 | 
    &  %---ref--- | 
| 337 | 
    \\ | 
| 338 | 
\end{tabular} | 
| 339 | 
\end{table} | 
| 340 | 
 | 
| 341 | 
\newpage | 
| 342 | 
\begin{table} | 
| 343 | 
%\hspace*{-1.5in} | 
| 344 | 
\begin{tabular}{lllc} | 
| 345 | 
 | 
| 346 | 
  \textbf{Name}  &  \textbf{value}   | 
| 347 | 
    &  \textbf{Description}   &  \textbf{Reference}  \\ | 
| 348 | 
  & & & \\ | 
| 349 | 
   SadournyCoriolis  &                     F | 
| 350 | 
    &   Sadourny Coriolis discr. flag  | 
| 351 | 
    &  %---ref--- | 
| 352 | 
    \\ | 
| 353 | 
   upwindVorticity  &                     F | 
| 354 | 
    &   Upwind bias vorticity flag  | 
| 355 | 
    &  %---ref--- | 
| 356 | 
    \\ | 
| 357 | 
   useAbsVorticity  &                     F | 
| 358 | 
    &   Work with f | 
| 359 | 
    &  %---ref--- | 
| 360 | 
    \\ | 
| 361 | 
   highOrderVorticity  &                     F | 
| 362 | 
    &   High order interp. of vort. flag  | 
| 363 | 
    &  %---ref--- | 
| 364 | 
    \\ | 
| 365 | 
   upwindShear  &                     F | 
| 366 | 
    &   Upwind vertical Shear advection flag  | 
| 367 | 
    &  %---ref--- | 
| 368 | 
    \\ | 
| 369 | 
   selectKEscheme  &                         0 | 
| 370 | 
    &   Kinetic Energy scheme selector  | 
| 371 | 
    &  %---ref--- | 
| 372 | 
    \\ | 
| 373 | 
   momForcing   &                     T | 
| 374 | 
    &   Momentum forcing on/off flag  | 
| 375 | 
    &  %---ref--- | 
| 376 | 
    \\ | 
| 377 | 
   momPressureForcing   &                     T | 
| 378 | 
    &   Momentum pressure term on/off flag  | 
| 379 | 
    &  %---ref--- | 
| 380 | 
    \\ | 
| 381 | 
   implicitIntGravWave  &                     F | 
| 382 | 
    &   Implicit Internal Gravity Wave flag  | 
| 383 | 
    &  %---ref--- | 
| 384 | 
    \\ | 
| 385 | 
   staggerTimeStep   &                     F | 
| 386 | 
    &   Stagger time stepping on/off flag  | 
| 387 | 
    &  %---ref--- | 
| 388 | 
    \\ | 
| 389 | 
   multiDimAdvection   &                     T | 
| 390 | 
    &   enable/disable Multi-Dim Advection  | 
| 391 | 
    &  %---ref--- | 
| 392 | 
    \\ | 
| 393 | 
   useMultiDimAdvec   &                     F | 
| 394 | 
    &   Multi-Dim Advection is/is-not used  | 
| 395 | 
    &  %---ref--- | 
| 396 | 
    \\ | 
| 397 | 
   implicitDiffusion   &                     F | 
| 398 | 
    &   Implicit Diffusion on/off flag  | 
| 399 | 
    &  %---ref--- | 
| 400 | 
    \\ | 
| 401 | 
   tempStepping   &                     T | 
| 402 | 
    &   Temperature equation on/off flag  | 
| 403 | 
    &  %---ref--- | 
| 404 | 
    \\ | 
| 405 | 
   tempAdvection  &                     T | 
| 406 | 
    &   Temperature advection on/off flag  | 
| 407 | 
    &  %---ref--- | 
| 408 | 
    \\ | 
| 409 | 
   tempImplVertAdv   &                     F | 
| 410 | 
    &   Temp. implicit vert. advection on/off  | 
| 411 | 
    &  %---ref--- | 
| 412 | 
    \\ | 
| 413 | 
   tempForcing    &                     T | 
| 414 | 
    &   Temperature forcing on/off flag  | 
| 415 | 
    &  %---ref--- | 
| 416 | 
    \\ | 
| 417 | 
   saltStepping   &                     T | 
| 418 | 
    &   Salinity equation on/off flag  | 
| 419 | 
    &  %---ref--- | 
| 420 | 
    \\ | 
| 421 | 
   saltAdvection  &                     T | 
| 422 | 
    &   Salinity advection on/off flag  | 
| 423 | 
    &  %---ref--- | 
| 424 | 
    \\ | 
| 425 | 
   saltImplVertAdv   &                     F | 
| 426 | 
    &   Sali. implicit vert. advection on/off  | 
| 427 | 
    &  %---ref--- | 
| 428 | 
    \\ | 
| 429 | 
   saltForcing    &                     T | 
| 430 | 
    &   Salinity forcing on/off flag  | 
| 431 | 
    &  %---ref--- | 
| 432 | 
    \\ | 
| 433 | 
    readBinaryPrec   &                        32 | 
| 434 | 
    &   Precision used for reading binary files  | 
| 435 | 
    &  %---ref--- | 
| 436 | 
    \\ | 
| 437 | 
   writeBinaryPrec   &                        32 | 
| 438 | 
    &   Precision used for writing binary files  | 
| 439 | 
    &  %---ref--- | 
| 440 | 
    \\ | 
| 441 | 
    globalFiles   &                     F | 
| 442 | 
    &   write "global" (=not per tile) files  | 
| 443 | 
    &  %---ref--- | 
| 444 | 
    \\ | 
| 445 | 
    useSingleCpuIO   &                     F | 
| 446 | 
    &   only master MPI process does I/O  | 
| 447 | 
    &  %---ref--- | 
| 448 | 
    \\ | 
| 449 | 
    debugMode    &                     F | 
| 450 | 
    &   Debug Mode on/off flag  | 
| 451 | 
    &  %---ref--- | 
| 452 | 
    \\ | 
| 453 | 
      debLevA    &                         1 | 
| 454 | 
    &   1rst level of debugging  | 
| 455 | 
    &  %---ref--- | 
| 456 | 
    \\ | 
| 457 | 
      debLevB    &                         2 | 
| 458 | 
    &   2nd  level of debugging  | 
| 459 | 
    &  %---ref--- | 
| 460 | 
    \\ | 
| 461 | 
    debugLevel   &                         1 | 
| 462 | 
    &   select debugging level  | 
| 463 | 
    &  %---ref--- | 
| 464 | 
    \\ | 
| 465 | 
   cg2dMaxIters   &                       150 | 
| 466 | 
    &   Upper limit on 2d con. grad iterations   | 
| 467 | 
    &  %---ref--- | 
| 468 | 
    \\ | 
| 469 | 
   cg2dChkResFreq   &                         1 | 
| 470 | 
    &   2d con. grad convergence test frequency  | 
| 471 | 
    &  %---ref--- | 
| 472 | 
    \\ | 
| 473 | 
   cg2dTargetResidual   &                   1.0E-07 | 
| 474 | 
    &   2d con. grad target residual   | 
| 475 | 
    &  %---ref--- | 
| 476 | 
    \\ | 
| 477 | 
   cg2dTargetResWunit   &                  -1.0E+00 | 
| 478 | 
    &   CG2d target residual [W units]  | 
| 479 | 
    &  %---ref--- | 
| 480 | 
    \\ | 
| 481 | 
   cg2dPreCondFreq   &                         1 | 
| 482 | 
    &   Freq. for updating cg2d preconditioner  | 
| 483 | 
    &  %---ref--- | 
| 484 | 
    \\ | 
| 485 | 
   nIter0   &                         0 | 
| 486 | 
    &   Run starting timestep number   | 
| 487 | 
    &  %---ref--- | 
| 488 | 
    \\ | 
| 489 | 
   nTimeSteps   &                         0 | 
| 490 | 
    &   Number of timesteps  | 
| 491 | 
    &  %---ref--- | 
| 492 | 
    \\ | 
| 493 | 
   deltatTmom   &                   6.0E+01 | 
| 494 | 
    &   Momentum equation timestep ( s )  | 
| 495 | 
    &  %---ref--- | 
| 496 | 
    \\ | 
| 497 | 
   deltaTfreesurf   &                   6.0E+01 | 
| 498 | 
    &   FreeSurface equation timestep ( s )  | 
| 499 | 
    &  %---ref--- | 
| 500 | 
    \\ | 
| 501 | 
   dTtracerLev   &      6.0E+01 at K= top | 
| 502 | 
    &   Tracer equation timestep ( s )  | 
| 503 | 
    &  %---ref--- | 
| 504 | 
    \\ | 
| 505 | 
   deltatTClock    &                   6.0E+01 | 
| 506 | 
    &   Model clock timestep ( s )  | 
| 507 | 
    &  %---ref--- | 
| 508 | 
    \\ | 
| 509 | 
\end{tabular} | 
| 510 | 
\end{table} | 
| 511 | 
 | 
| 512 | 
\newpage | 
| 513 | 
\begin{table} | 
| 514 | 
%\hspace*{-1.5in} | 
| 515 | 
\begin{tabular}{lllc} | 
| 516 | 
 | 
| 517 | 
  \textbf{Name}  &  \textbf{value}   | 
| 518 | 
    &  \textbf{Description}   &  \textbf{Reference}  \\ | 
| 519 | 
  & & & \\ | 
| 520 | 
   cAdjFreq   &                   0.0E+00 | 
| 521 | 
    &   Convective adjustment interval ( s )  | 
| 522 | 
    &  %---ref--- | 
| 523 | 
    \\ | 
| 524 | 
   momForcingOutAB   &                         0 | 
| 525 | 
    &   =1: take Momentum Forcing out of Adams-Bash. | 
| 526 | 
    &  %---ref--- | 
| 527 | 
    \\ | 
| 528 | 
   tracForcingOutAB   &                         0 | 
| 529 | 
    &   =1: take T,S,pTr Forcing out of Adams-Bash. | 
| 530 | 
    &  %---ref--- | 
| 531 | 
    \\ | 
| 532 | 
   momDissip\_In\_AB   &                     T | 
| 533 | 
    &   put Dissipation Tendency in Adams-Bash.  | 
| 534 | 
    &  %---ref--- | 
| 535 | 
    \\ | 
| 536 | 
   doAB\_onGtGs   &                     T | 
| 537 | 
    &   apply AB on Tendencies (rather than on T,S) | 
| 538 | 
    &  %---ref--- | 
| 539 | 
    \\ | 
| 540 | 
   abEps   &                   1.0E-02 | 
| 541 | 
    &   Adams-Bashforth-2 stabilizing weight  | 
| 542 | 
    &  %---ref--- | 
| 543 | 
    \\ | 
| 544 | 
   baseTime   &                   0.0E+00 | 
| 545 | 
    &   Model base time ( s ).  | 
| 546 | 
    &  %---ref--- | 
| 547 | 
    \\ | 
| 548 | 
   startTime   &                   0.0E+00 | 
| 549 | 
    &   Run start time ( s ).  | 
| 550 | 
    &  %---ref--- | 
| 551 | 
    \\ | 
| 552 | 
   endTime   &                   0.0E+00 | 
| 553 | 
    &   Integration ending time ( s ).  | 
| 554 | 
    &  %---ref--- | 
| 555 | 
    \\ | 
| 556 | 
   pChkPtFreq   &                   0.0E+00 | 
| 557 | 
    &   Permanent restart/checkpoint file interval ( s ).  | 
| 558 | 
    &  %---ref--- | 
| 559 | 
    \\ | 
| 560 | 
   chkPtFreq   &                   0.0E+00 | 
| 561 | 
    &   Rolling restart/checkpoint file interval ( s ).  | 
| 562 | 
    &  %---ref--- | 
| 563 | 
    \\ | 
| 564 | 
   pickup\_write\_mdsio   &                     T | 
| 565 | 
    &   Model IO flag.  | 
| 566 | 
    &  %---ref--- | 
| 567 | 
    \\ | 
| 568 | 
   pickup\_read\_mdsio   &                     T | 
| 569 | 
    &   Model IO flag.  | 
| 570 | 
    &  %---ref--- | 
| 571 | 
    \\ | 
| 572 | 
   pickup\_write\_immed   &                     F | 
| 573 | 
    &   Model IO flag.  | 
| 574 | 
    &  %---ref--- | 
| 575 | 
    \\ | 
| 576 | 
   dumpFreq   &                   0.0E+00 | 
| 577 | 
    &   Model state write out interval ( s ).  | 
| 578 | 
    &  %---ref--- | 
| 579 | 
    \\ | 
| 580 | 
   dumpInitAndLast  &                     T | 
| 581 | 
    &   write out Initial and Last iter. model state  | 
| 582 | 
    &  %---ref--- | 
| 583 | 
    \\ | 
| 584 | 
   snapshot\_mdsio   &                     T | 
| 585 | 
    &   Model IO flag.  | 
| 586 | 
    &  %---ref--- | 
| 587 | 
    \\ | 
| 588 | 
   monitorFreq   &                   6.0E+01 | 
| 589 | 
    &   Monitor output interval ( s ).  | 
| 590 | 
    &  %---ref--- | 
| 591 | 
    \\ | 
| 592 | 
   monitor\_stdio   &                     T | 
| 593 | 
    &   Model IO flag.  | 
| 594 | 
    &  %---ref--- | 
| 595 | 
    \\ | 
| 596 | 
   externForcingPeriod   &                   0.0E+00 | 
| 597 | 
    &   forcing period (s)  | 
| 598 | 
    &  %---ref--- | 
| 599 | 
    \\ | 
| 600 | 
   externForcingCycle   &                   0.0E+00 | 
| 601 | 
    &   period of the cyle (s).  | 
| 602 | 
    &  %---ref--- | 
| 603 | 
    \\ | 
| 604 | 
   tauThetaClimRelax   &                   0.0E+00 | 
| 605 | 
    &   relaxation time scale (s)  | 
| 606 | 
    &  %---ref--- | 
| 607 | 
    \\ | 
| 608 | 
   tauSaltClimRelax   &                   0.0E+00 | 
| 609 | 
    &   relaxation time scale (s)  | 
| 610 | 
    &  %---ref--- | 
| 611 | 
    \\ | 
| 612 | 
   latBandClimRelax   &                   3.703701E+05 | 
| 613 | 
    &   max. Lat. where relaxation  | 
| 614 | 
    &  %---ref--- | 
| 615 | 
    \\ | 
| 616 | 
   usingCartesianGrid   &                     T | 
| 617 | 
    &   Cartesian coordinates flag ( True / False )  | 
| 618 | 
    &  %---ref--- | 
| 619 | 
    \\ | 
| 620 | 
   usingSphericalPolarGrid   &                     F | 
| 621 | 
    &   Spherical coordinates flag ( True / False )  | 
| 622 | 
    &  %---ref--- | 
| 623 | 
    \\ | 
| 624 | 
   usingCylindricalGrid   &                     F | 
| 625 | 
    &   Spherical coordinates flag ( True / False )  | 
| 626 | 
    &  %---ref--- | 
| 627 | 
    \\ | 
| 628 | 
   Ro\_SeaLevel   &                   0.0E+00 | 
| 629 | 
    &   r(1) ( units of r )  | 
| 630 | 
    &  %---ref--- | 
| 631 | 
    \\ | 
| 632 | 
   rkSign   &                  -1.0E+00 | 
| 633 | 
    &   index orientation relative to vertical coordinate  | 
| 634 | 
    &  %---ref--- | 
| 635 | 
    \\ | 
| 636 | 
   horiVertRatio   &                   1.0E+00 | 
| 637 | 
    &   Ratio on units : Horiz - Vertical  | 
| 638 | 
    &  %---ref--- | 
| 639 | 
    \\ | 
| 640 | 
   drC   &                   5.0E+03 at K=1 | 
| 641 | 
    &   C spacing ( units of r )  | 
| 642 | 
    &  %---ref--- | 
| 643 | 
    \\ | 
| 644 | 
   drF   &      1.0E+04 at K= top | 
| 645 | 
    &   W spacing ( units of r )  | 
| 646 | 
    &  %---ref--- | 
| 647 | 
    \\ | 
| 648 | 
   delX   &      1.234567E+05  at I= east | 
| 649 | 
    &   U spacing ( m - cartesian, degrees - spherical )  | 
| 650 | 
    &  %---ref--- | 
| 651 | 
    \\ | 
| 652 | 
   delY   &                   1.234567E+05  at J=1  | 
| 653 | 
    &   V spacing ( m - cartesian, degrees - spherical )  | 
| 654 | 
    &  %---ref--- | 
| 655 | 
    \\ | 
| 656 | 
   ygOrigin  &                   0.0E+00 | 
| 657 | 
    &   South edge Y-axis origin (cartesian: m, spherical: deg.)  | 
| 658 | 
 | 
| 659 | 
    &  %---ref--- | 
| 660 | 
    \\ | 
| 661 | 
   xgOrigin  &                   0.0E+00 | 
| 662 | 
    &   West edge X-axis origin (cartesian: m, spherical: deg.)  | 
| 663 | 
    &  %---ref--- | 
| 664 | 
    \\ | 
| 665 | 
   rSphere   &                   6.37E+06 | 
| 666 | 
    &   Radius ( ignored - cartesian, m - spherical )  | 
| 667 | 
    &  %---ref--- | 
| 668 | 
    \\ | 
| 669 | 
   xcoord   &                   6.172835E+04 at I=1 | 
| 670 | 
    &   P-point X coord ( m - cartesian, degrees - spherical )  | 
| 671 | 
    &  %---ref--- | 
| 672 | 
    \\ | 
| 673 | 
   ycoord   &                   6.172835E+04 at J=1 | 
| 674 | 
    &   P-point Y coord ( m - cartesian, degrees - spherical )  | 
| 675 | 
    &  %---ref--- | 
| 676 | 
    \\ | 
| 677 | 
   rcoord   &                  -5.0E+03 at K=1 | 
| 678 | 
    &   P-point R coordinate (  units of r )  | 
| 679 | 
    &  %---ref--- | 
| 680 | 
    \\ | 
| 681 | 
   rF   &                   0.0E+00 at K=1 | 
| 682 | 
    &   W-Interf. R coordinate (  units of r )  | 
| 683 | 
    &  %---ref--- | 
| 684 | 
    \\ | 
| 685 | 
   dBdrRef   &      0.0E+00  at K= top | 
| 686 | 
    &   Vertical gradient of reference boyancy [$(m/s/r)^2)$]  | 
| 687 | 
    &  %---ref--- | 
| 688 | 
    \\ | 
| 689 | 
\end{tabular} | 
| 690 | 
\end{table} | 
| 691 | 
 | 
| 692 | 
\newpage | 
| 693 | 
\begin{table} | 
| 694 | 
%\hspace*{-1.5in} | 
| 695 | 
\begin{tabular}{lllc} | 
| 696 | 
 | 
| 697 | 
  \textbf{Name}  &  \textbf{value}   | 
| 698 | 
    &  \textbf{Description}   &  \textbf{Reference}  \\ | 
| 699 | 
  & & & \\ | 
| 700 | 
   dxF   &       1.234567E+05  at K= top | 
| 701 | 
    &   dxF(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 702 | 
    &  %---ref--- | 
| 703 | 
    \\ | 
| 704 | 
   dyF   &      1.234567E+05  at I= east | 
| 705 | 
    &   dyF(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 706 | 
    &  %---ref--- | 
| 707 | 
    \\ | 
| 708 | 
   dxG   &      1.234567E+05   at I= east | 
| 709 | 
    &   dxG(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 710 | 
    &  %---ref--- | 
| 711 | 
    \\ | 
| 712 | 
   dyG   &      1.234567E+05   at I= east | 
| 713 | 
    &   dyG(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 714 | 
    &  %---ref--- | 
| 715 | 
    \\ | 
| 716 | 
   dxC   &      1.234567E+05  at I= east | 
| 717 | 
    &   dxC(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 718 | 
    &  %---ref--- | 
| 719 | 
    \\ | 
| 720 | 
   dyC   &      1.234567E+05  at I= east | 
| 721 | 
    &   dyC(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 722 | 
    &  %---ref--- | 
| 723 | 
    \\ | 
| 724 | 
   dxV   &      1.234567E+05   at I= east | 
| 725 | 
    &   dxV(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 726 | 
    &  %---ref--- | 
| 727 | 
    \\ | 
| 728 | 
   dyU   &      1.234567E+05   at I= east | 
| 729 | 
    &   dyU(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 730 | 
    &  %---ref--- | 
| 731 | 
    \\ | 
| 732 | 
   rA   &      1.524155677489E+10  at I= east | 
| 733 | 
    &   rA(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 734 | 
    &  %---ref--- | 
| 735 | 
    \\ | 
| 736 | 
   rAw   &      1.524155677489E+10   at K= top | 
| 737 | 
    &   rAw(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 738 | 
    &  %---ref--- | 
| 739 | 
    \\ | 
| 740 | 
   rAs   &      1.524155677489E+10   at K= top | 
| 741 | 
    &   rAs(:,1,:,1) ( m - cartesian, degrees - spherical )  | 
| 742 | 
    &  %---ref--- | 
| 743 | 
    \\ | 
| 744 | 
 | 
| 745 | 
\end{tabular} | 
| 746 | 
\end{table} | 
| 747 | 
 | 
| 748 | 
\begin{table} | 
| 749 | 
%\hspace*{-1.5in} | 
| 750 | 
\begin{tabular}{lllc} | 
| 751 | 
 | 
| 752 | 
  \textbf{Name}  &  \textbf{Default value}   | 
| 753 | 
    &  \textbf{Description}   &  \textbf{Reference}  \\ | 
| 754 | 
  & & & \\ | 
| 755 | 
 | 
| 756 | 
   tempAdvScheme   &                         2 | 
| 757 | 
    &   Temp. Horiz.Advection scheme selector  | 
| 758 | 
    &  %---ref--- | 
| 759 | 
    \\ | 
| 760 | 
   tempVertAdvScheme   &                         2 | 
| 761 | 
    &   Temp. Vert. Advection scheme selector  | 
| 762 | 
    &  %---ref--- | 
| 763 | 
    \\ | 
| 764 | 
   tempMultiDimAdvec   &                     F | 
| 765 | 
    &   use Muti-Dim Advec method for Temp  | 
| 766 | 
    &  %---ref--- | 
| 767 | 
    \\ | 
| 768 | 
   tempAdamsBashforth   &                     T | 
| 769 | 
    &   use Adams-Bashforth time-stepping for Temp  | 
| 770 | 
    &  %---ref--- | 
| 771 | 
    \\ | 
| 772 | 
   saltAdvScheme   &                         2 | 
| 773 | 
    &   Salt. Horiz.advection scheme selector  | 
| 774 | 
    &  %---ref--- | 
| 775 | 
    \\ | 
| 776 | 
   saltVertAdvScheme   &                         2 | 
| 777 | 
    &   Salt. Vert. Advection scheme selector  | 
| 778 | 
    &  %---ref--- | 
| 779 | 
    \\ | 
| 780 | 
   saltMultiDimAdvec   &                     F | 
| 781 | 
    &   use Muti-Dim Advec method for Salt  | 
| 782 | 
    &  %---ref--- | 
| 783 | 
    \\ | 
| 784 | 
   saltAdamsBashforth   &                     T | 
| 785 | 
    &   use Adams-Bashforth time-stepping for Salt  | 
| 786 | 
    &  %---ref--- | 
| 787 | 
    \\ | 
| 788 | 
 | 
| 789 | 
\end{tabular} | 
| 790 | 
\end{table} | 
| 791 | 
 |