/[MITgcm]/manual/s_getstarted/text/getting_started.tex
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revision 1.32 by edhill, Wed Apr 5 02:27:33 2006 UTC revision 1.34 by edhill, Sat Apr 8 15:29:05 2006 UTC
# Line 126  The MITgcm web site contains further dir Line 126  The MITgcm web site contains further dir
126  code and CVS.  It also contains a web interface to our CVS archive so  code and CVS.  It also contains a web interface to our CVS archive so
127  that one may easily view the state of files, revisions, and other  that one may easily view the state of files, revisions, and other
128  development milestones:  development milestones:
129  \begin{rawhtml} <A href=''http://mitgcm.org/download'' target="idontexist"> \end{rawhtml}  \begin{rawhtml} <A href="http://mitgcm.org/download" target="idontexist"> \end{rawhtml}
130  \begin{verbatim}  \begin{verbatim}
131  http://mitgcm.org/source_code.html  http://mitgcm.org/source_code.html
132  \end{verbatim}  \end{verbatim}
# Line 163  track of your file versions with respect Line 163  track of your file versions with respect
163  the files in \texttt{CVS}!  You can also use CVS to download code  the files in \texttt{CVS}!  You can also use CVS to download code
164  updates.  More extensive information on using CVS for maintaining  updates.  More extensive information on using CVS for maintaining
165  MITgcm code can be found  MITgcm code can be found
166  \begin{rawhtml} <A href=''http://mitgcm.org/usingcvstoget.html'' target="idontexist"> \end{rawhtml}  \begin{rawhtml} <A href="http://mitgcm.org/usingcvstoget.html" target="idontexist"> \end{rawhtml}
167  here  here
168  \begin{rawhtml} </A> \end{rawhtml}  \begin{rawhtml} </A> \end{rawhtml}
169  .  .
# Line 192  delete; even if you do not use CVS yours Line 192  delete; even if you do not use CVS yours
192  us if you should need to send us your copy of the code.  If a recent  us if you should need to send us your copy of the code.  If a recent
193  tar file does not exist, then please contact the developers through  tar file does not exist, then please contact the developers through
194  the  the
195  \begin{rawhtml} <A href=''mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}  \begin{rawhtml} <A href="mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}
196  MITgcm-support@mitgcm.org  MITgcm-support@mitgcm.org
197  \begin{rawhtml} </A> \end{rawhtml}  \begin{rawhtml} </A> \end{rawhtml}
198  mailing list.  mailing list.
# Line 404  Gent/McWilliams scheme). 2D (Y-Z). Line 404  Gent/McWilliams scheme). 2D (Y-Z).
404        
405  \item \texttt{aim.5l\_LatLon} - Intermediate Atmospheric physics.  \item \texttt{aim.5l\_LatLon} - Intermediate Atmospheric physics.
406    Global configuration, on latitude longitude grid with 128x64x5 grid    Global configuration, on latitude longitude grid with 128x64x5 grid
407    points ($2.8^\circ{\rm degree}$ resolution).    points ($2.8^\circ$ resolution).
408        
409  \item \texttt{adjustment.128x64x1} Barotropic adjustment problem on  \item \texttt{adjustment.128x64x1} Barotropic adjustment problem on
410    latitude longitude grid with 128x64 grid points ($2.8^\circ{\rm    latitude longitude grid with 128x64 grid points ($2.8^\circ$ resolution).
     degree}$ resolution).  
411        
412  \item \texttt{adjustment.cs-32x32x1} Barotropic adjustment problem on  \item \texttt{adjustment.cs-32x32x1} Barotropic adjustment problem on
413    cube sphere grid with 32x32 points per face ( roughly $2.8^\circ{\rm    cube sphere grid with 32x32 points per face (roughly $2.8^\circ$
414      degree}$ resolution).    resolution).
415        
416  \item \texttt{advect\_cs} Two-dimensional passive advection test on  \item \texttt{advect\_cs} Two-dimensional passive advection test on
417    cube sphere grid.    cube sphere grid.
# Line 550  Through the MITgcm-support list, the MIT Line 549  Through the MITgcm-support list, the MIT
549  provide help writing or modifing ``optfiles''.  And we encourage users  provide help writing or modifing ``optfiles''.  And we encourage users
550  to post new ``optfiles'' (particularly ones for new machines or  to post new ``optfiles'' (particularly ones for new machines or
551  architectures) to the  architectures) to the
552  \begin{rawhtml} <A href=''mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}  \begin{rawhtml} <A href="mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}
553  MITgcm-support@mitgcm.org  MITgcm-support@mitgcm.org
554  \begin{rawhtml} </A> \end{rawhtml}  \begin{rawhtml} </A> \end{rawhtml}
555  list.  list.
# Line 658  package.  At a minimum, the instantaneou Line 657  package.  At a minimum, the instantaneou
657  written out, which is made of the following files:  written out, which is made of the following files:
658    
659  \begin{itemize}  \begin{itemize}
660  \item \texttt{U.00000nIter} - zonal component of velocity field (m/s and $>  \item \texttt{U.00000nIter} - zonal component of velocity field (m/s
661  0 $ eastward).    and positive eastward).
662    
663  \item \texttt{V.00000nIter} - meridional component of velocity field (m/s  \item \texttt{V.00000nIter} - meridional component of velocity field
664  and $> 0$ northward).    (m/s and positive northward).
665    
666  \item \texttt{W.00000nIter} - vertical component of velocity field (ocean:  \item \texttt{W.00000nIter} - vertical component of velocity field
667  m/s and $> 0$ upward, atmosphere: Pa/s and $> 0$ towards increasing pressure    (ocean: m/s and positive upward, atmosphere: Pa/s and positive
668  i.e. downward).    towards increasing pressure i.e. downward).
669    
670  \item \texttt{T.00000nIter} - potential temperature (ocean: $^{0}$C,  \item \texttt{T.00000nIter} - potential temperature (ocean:
671  atmosphere: $^{0}$K).    $^{\circ}\mathrm{C}$, atmosphere: $^{\circ}\mathrm{K}$).
672    
673  \item \texttt{S.00000nIter} - ocean: salinity (psu), atmosphere: water vapor  \item \texttt{S.00000nIter} - ocean: salinity (psu), atmosphere: water
674  (g/kg).    vapor (g/kg).
675    
676  \item \texttt{Eta.00000nIter} - ocean: surface elevation (m), atmosphere:  \item \texttt{Eta.00000nIter} - ocean: surface elevation (m),
677  surface pressure anomaly (Pa).    atmosphere: surface pressure anomaly (Pa).
678  \end{itemize}  \end{itemize}
679    
680  The chain \texttt{00000nIter} consists of ten figures that specify the  The chain \texttt{00000nIter} consists of ten figures that specify the
681  iteration number at which the output is written out. For example, \texttt{%  iteration number at which the output is written out. For example,
682  U.0000000300} is the zonal velocity at iteration 300.  \texttt{U.0000000300} is the zonal velocity at iteration 300.
683    
684  In addition, a ``pickup'' or ``checkpoint'' file called:  In addition, a ``pickup'' or ``checkpoint'' file called:
685    
# Line 717  format and can thus be browsed and/or pl Line 716  format and can thus be browsed and/or pl
716    with every netCDF install:    with every netCDF install:
717    \begin{rawhtml} <A href="http://www.unidata.ucar.edu/packages/netcdf/"> \end{rawhtml}    \begin{rawhtml} <A href="http://www.unidata.ucar.edu/packages/netcdf/"> \end{rawhtml}
718  \begin{verbatim}  \begin{verbatim}
719       http://www.unidata.ucar.edu/packages/netcdf/  http://www.unidata.ucar.edu/packages/netcdf/
720  \end{verbatim}  \end{verbatim}
721    \begin{rawhtml} </A> \end{rawhtml} and it converts the netCDF    \begin{rawhtml} </A> \end{rawhtml} and it converts the netCDF
722    binaries into formatted ASCII text files.    binaries into formatted ASCII text files.
# Line 726  format and can thus be browsed and/or pl Line 725  format and can thus be browsed and/or pl
725    to plot netCDF data and it runs on most OSes:    to plot netCDF data and it runs on most OSes:
726    \begin{rawhtml} <A href="http://meteora.ucsd.edu/~pierce/ncview_home_page.html"> \end{rawhtml}    \begin{rawhtml} <A href="http://meteora.ucsd.edu/~pierce/ncview_home_page.html"> \end{rawhtml}
727  \begin{verbatim}  \begin{verbatim}
728       http://meteora.ucsd.edu/~pierce/ncview_home_page.html  http://meteora.ucsd.edu/~pierce/ncview_home_page.html
729  \end{verbatim}  \end{verbatim}
730    \begin{rawhtml} </A> \end{rawhtml}    \begin{rawhtml} </A> \end{rawhtml}
731        
732  \item MatLAB(c) and other common post-processing environments provide  \item MatLAB(c) and other common post-processing environments provide
733    various netCDF interfaces including:    various netCDF interfaces including:
734      \begin{rawhtml} <A href="http://mexcdf.sourceforge.net/"> \end{rawhtml}
735    \begin{verbatim}
736    http://mexcdf.sourceforge.net/
737    \end{verbatim}
738      \begin{rawhtml} </A> \end{rawhtml}
739    \begin{rawhtml} <A href="http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html"> \end{rawhtml}    \begin{rawhtml} <A href="http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html"> \end{rawhtml}
740  \begin{verbatim}  \begin{verbatim}
741  http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html  http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html
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