/[MITgcm]/manual/s_getstarted/text/getting_started.tex

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-revision 1.31 by edhill,
Tue Aug  9 21:52:09 2005 UTC
+revision 1.34 by edhill,
Sat Apr  8 15:29:05 2006 UTC
 Line 126 
 The MITgcm web site contains further dir
  code and CVS.  It also contains a web interface to our CVS archive so
  that one may easily view the state of files, revisions, and other
  development milestones:
- \begin{rawhtml} <A href=''http://mitgcm.org/download'' target="idontexist"> \end{rawhtml}
+ \begin{rawhtml} <A href="http://mitgcm.org/download" target="idontexist"> \end{rawhtml}
  \begin{verbatim}
  http://mitgcm.org/source_code.html
  \end{verbatim}
 Line 163 
 track of your file versions with respect
  the files in \texttt{CVS}!  You can also use CVS to download code
  updates.  More extensive information on using CVS for maintaining
  MITgcm code can be found
- \begin{rawhtml} <A href=''http://mitgcm.org/usingcvstoget.html'' target="idontexist"> \end{rawhtml}
+ \begin{rawhtml} <A href="http://mitgcm.org/usingcvstoget.html" target="idontexist"> \end{rawhtml}
  here
  \begin{rawhtml} </A> \end{rawhtml}
  .
 Line 192 
 delete; even if you do not use CVS yours
  us if you should need to send us your copy of the code.  If a recent
  tar file does not exist, then please contact the developers through
  the
- \begin{rawhtml} <A href=''mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}
+ \begin{rawhtml} <A href="mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}
  MITgcm-support@mitgcm.org
  \begin{rawhtml} </A> \end{rawhtml}
  mailing list.
 Line 343 
 structure).
  %% a set of twenty-four pre-configured numerical experiments
- The MITgcm distribution comes with more than a dozen pre-configured
+ The full MITgcm distribution comes with more than a dozen
- numerical experiments. Some of these example experiments are tests of
+ pre-configured numerical experiments. Some of these example
- individual parts of the model code, but many are fully fledged
+ experiments are tests of individual parts of the model code, but many
- numerical simulations. A few of the examples are used for tutorial
+ are fully fledged numerical simulations. A few of the examples are
- documentation in sections \ref{sect:eg-baro} - \ref{sect:eg-global}.
+ used for tutorial documentation in sections \ref{sect:eg-baro} -
- The other examples follow the same general structure as the tutorial
+ \ref{sect:eg-global}.  The other examples follow the same general
- examples. However, they only include brief instructions in a text file
+ structure as the tutorial examples. However, they only include brief
- called {\it README}.  The examples are located in subdirectories under
+ instructions in a text file called {\it README}.  The examples are
- the directory \texttt{verification}. Each example is briefly described
+ located in subdirectories under the directory \texttt{verification}.
- below.
+ Each example is briefly described below.
  \subsection{Full list of model examples}
 Line 404 
 Gent/McWilliams scheme). 2D (Y-Z).
  \item \texttt{aim.5l\_LatLon} - Intermediate Atmospheric physics.
    Global configuration, on latitude longitude grid with 128x64x5 grid
-   points ($2.8^\circ{\rm degree}$ resolution).
+   points ($2.8^\circ$ resolution).
  \item \texttt{adjustment.128x64x1} Barotropic adjustment problem on
-   latitude longitude grid with 128x64 grid points ($2.8^\circ{\rm
+   latitude longitude grid with 128x64 grid points ($2.8^\circ$ resolution).
-     degree}$ resolution).
  \item \texttt{adjustment.cs-32x32x1} Barotropic adjustment problem on
-   cube sphere grid with 32x32 points per face ( roughly $2.8^\circ{\rm
+   cube sphere grid with 32x32 points per face (roughly $2.8^\circ$
-     degree}$ resolution).
+   resolution).
  \item \texttt{advect\_cs} Two-dimensional passive advection test on
    cube sphere grid.
-Line 550 
 Through the MITgcm-support list, the MIT
+Line 549 
 Through the MITgcm-support list, the MIT
  provide help writing or modifing ``optfiles''.  And we encourage users
  to post new ``optfiles'' (particularly ones for new machines or
  architectures) to the
- \begin{rawhtml} <A href=''mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}
+ \begin{rawhtml} <A href="mailto:MITgcm-support@mitgcm.org"> \end{rawhtml}
  MITgcm-support@mitgcm.org
  \begin{rawhtml} </A> \end{rawhtml}
  list.
-Line 658 
 package.  At a minimum, the instantaneou
+Line 657 
 package.  At a minimum, the instantaneou
  written out, which is made of the following files:
  \begin{itemize}
- \item \texttt{U.00000nIter} - zonal component of velocity field (m/s and $>
+ \item \texttt{U.00000nIter} - zonal component of velocity field (m/s
-$ eastward).
+   and positive eastward).
- \item \texttt{V.00000nIter} - meridional component of velocity field (m/s
+ \item \texttt{V.00000nIter} - meridional component of velocity field
- and $> 0$ northward).
+   (m/s and positive northward).
- \item \texttt{W.00000nIter} - vertical component of velocity field (ocean:
+ \item \texttt{W.00000nIter} - vertical component of velocity field
- m/s and $> 0$ upward, atmosphere: Pa/s and $> 0$ towards increasing pressure
+   (ocean: m/s and positive upward, atmosphere: Pa/s and positive
- i.e. downward).
+   towards increasing pressure i.e. downward).
- \item \texttt{T.00000nIter} - potential temperature (ocean: $^{0}$C,
+ \item \texttt{T.00000nIter} - potential temperature (ocean:
- atmosphere: $^{0}$K).
+   $^{\circ}\mathrm{C}$, atmosphere: $^{\circ}\mathrm{K}$).
- \item \texttt{S.00000nIter} - ocean: salinity (psu), atmosphere: water vapor
+ \item \texttt{S.00000nIter} - ocean: salinity (psu), atmosphere: water
- (g/kg).
+   vapor (g/kg).
- \item \texttt{Eta.00000nIter} - ocean: surface elevation (m), atmosphere:
+ \item \texttt{Eta.00000nIter} - ocean: surface elevation (m),
- surface pressure anomaly (Pa).
+   atmosphere: surface pressure anomaly (Pa).
  \end{itemize}
  The chain \texttt{00000nIter} consists of ten figures that specify the
- iteration number at which the output is written out. For example, \texttt{%
+ iteration number at which the output is written out. For example,
- U.0000000300} is the zonal velocity at iteration 300.
+ \texttt{U.0000000300} is the zonal velocity at iteration 300.
  In addition, a ``pickup'' or ``checkpoint'' file called:
-Line 717 
 format and can thus be browsed and/or pl
+Line 716 
 format and can thus be browsed and/or pl
    with every netCDF install:
    \begin{rawhtml} <A href="http://www.unidata.ucar.edu/packages/netcdf/"> \end{rawhtml}
  \begin{verbatim}
-      http://www.unidata.ucar.edu/packages/netcdf/
+ http://www.unidata.ucar.edu/packages/netcdf/
  \end{verbatim}
    \begin{rawhtml} </A> \end{rawhtml} and it converts the netCDF
    binaries into formatted ASCII text files.
-Line 726 
 format and can thus be browsed and/or pl
+Line 725 
 format and can thus be browsed and/or pl
    to plot netCDF data and it runs on most OSes:
    \begin{rawhtml} <A href="http://meteora.ucsd.edu/~pierce/ncview_home_page.html"> \end{rawhtml}
  \begin{verbatim}
-      http://meteora.ucsd.edu/~pierce/ncview_home_page.html
+ http://meteora.ucsd.edu/~pierce/ncview_home_page.html
  \end{verbatim}
    \begin{rawhtml} </A> \end{rawhtml}
  \item MatLAB(c) and other common post-processing environments provide
    various netCDF interfaces including:
+   \begin{rawhtml} <A href="http://mexcdf.sourceforge.net/"> \end{rawhtml}
+ \begin{verbatim}
+ http://mexcdf.sourceforge.net/
+ \end{verbatim}
+   \begin{rawhtml} </A> \end{rawhtml}
    \begin{rawhtml} <A href="http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html"> \end{rawhtml}
  \begin{verbatim}
  http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html

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