/[MITgcm]/manual/s_examples/text/model_examples.tex

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-revision 1.15 by jahn,
Tue Jan 15 16:31:06 2008 UTC
+revision 1.19 by jmc,
Tue Jan 15 23:24:59 2008 UTC
 Line 24 
 Each example is briefly described below.
  \begin{enumerate}
- \item \texttt{advection\_in\_gyre\_circulation} - test of various
+ \item \texttt{tutorial\_advection\_in\_gyre} - test of various
    advection schemes in a single-layer double-gyre experiment.
    This experiment is described in detail in section
    \ref{sect:eg-adv-gyre}.
- \item \texttt{tutorial\_barotropic\_gyre} - single layer, ocean double
-   gyre (barotropic with free-surface). This experiment is described in
-   detail in section \ref{sect:eg-baro}.
  \item \texttt{tutorial\_baroclinic\_gyre} - Four layer, ocean double
    gyre. This experiment is described in detail in section
    \ref{sect:eg-fourlayer}.
- \item \texttt{tutorial\_global\_oce\_latlon} - 4x4 degree global ocean
+ \item \texttt{tutorial\_barotropic\_gyre} - single layer, ocean double
-   simulation with steady climatological forcing. This experiment is
+   gyre (barotropic with free-surface).
-   described in detail in section \ref{sect:eg-global}.
+   This experiment is described in detail in section \ref{sect:eg-baro}.
+ \item \texttt{tutorial\_cfc\_offline} Offline form of the MITgcm to
+   study advection of a passive tracer and CFCs.
+   This experiment is described in detail in section \ref{sect:eg-offline-cfc}.
- \item \texttt{exp4} - Flow over a Gaussian bump in open-water or
-   channel with open boundaries.
  \item \texttt{tutorial\_deep\_convection} - Inhomogenously forced
    ocean convection in a doubly periodic box. This experiment is
    described in detail in section \ref{sect:eg-bconv}.
- \item \texttt{front\_relax} - Relaxation of an ocean thermal front
+ \item \texttt{tutorial\_global\_oce\_biogeo} Ocean model coupled to
-   (test for Gent/McWilliams scheme). 2D (Y-Z).
+   the dissolved inorganic carbon biogeochemistry model. This
+   experiment is described in detail in section
+   \ref{sect:eg-biogeochem_tutorial}.
+ \item \texttt{tutorial\_global\_oce\_in\_p} Global ocean simulation in
+   pressure coordinate (non-Boussinesq ocean model). Described in
+   detail in section \ref{sect:eg-globalpressure}.
+ \item \texttt{tutorial\_global\_oce\_latlon} - 4x4 degree global ocean
+   simulation with steady climatological forcing. This experiment is
+   described in detail in section \ref{sect:eg-global}.
+ \item \texttt{tutorial\_global\_oce\_optim} Global ocean state
+   estimation at $4^\circ$ resolution.  This experiment is described in
+   detail in section \ref{sect:eg-global_state_estimate}.
- \item \texttt{internal\_wave} - Ocean internal wave forced by open
-   boundary conditions.
- \item \texttt{natl\_box} - Eastern subtropical North Atlantic with KPP
-   scheme; 1 month integration
- \item \texttt{hs94.1x64x5} - Zonal averaged atmosphere using Held and
-   Suarez '94 forcing.
- \item \texttt{hs94.128x64x5} - 3D atmosphere dynamics using Held and
-   Suarez '94 forcing.
  \item \texttt{tutorial\_held\_suarez\_cs} - 3D atmosphere dynamics
-   using Held and Suarez (1994) forcing on the cubed sphere.  This
+   using Held and Suarez (1994) forcing on cubed sphere grid.  This
    experiment is described in detail in section \ref{sect:eg-hs}.
- \item \texttt{aim.5l\_zon-ave} - Intermediate Atmospheric physics.
+ \item \texttt{tutorial\_offline} Offline form of the MITgcm to study
-   Global Zonal Mean configuration, 1x64x5 resolution.
+   advection of a passive tracer.  This experiment is described in
+   detail in section \ref{sect:eg-offline}.
- \item \texttt{aim.5l\_XZ\_Equatorial\_Slice} - Intermediate
-   Atmospheric physics, equatorial Slice configuration.  2D (X-Z).
+ \item \texttt{tutorial\_plume\_on\_slope} Gravity Plume on a
+   continental slope.  This experiment is described in detail in
- \item \texttt{aim.5l\_Equatorial\_Channel} - Intermediate Atmospheric
+   section \ref{sect:eg-gravityplume}.
-   physics. 3D Equatorial Channel configuration.
+ \item \texttt{tutorial\_tracer\_adjsens} Simple passive tracer
- \item \texttt{aim.5l\_LatLon} - Intermediate Atmospheric physics.
+   experiment. Includes derivative calculation. This experiment is
-   Global configuration, on latitude longitude grid with 128x64x5 grid
+   described in detail in section \ref{sect:eg-simple-tracer-adjoint}.
-   points ($2.8^\circ$ resolution).
- \item \texttt{aim.5l\_cs}
  \item \texttt{adjustment.128x64x1} Barotropic adjustment problem on
    latitude longitude grid with 128x64 grid points ($2.8^\circ$ resolution).
-Line 90 
 Each example is briefly described below.
+Line 86 
 Each example is briefly described below.
    resolution).
  \item \texttt{advect\_cs} Two-dimensional passive advection test on
-   cube sphere grid.
+   cube sphere grid (32x32 grid points per face, roughly $2.8^\circ$)
  \item \texttt{advect\_xy} Two-dimensional (horizontal plane) passive
-   advection test on Cartesian grid.
+   advection test on Cartesian grid.\\
+   Also contains an additional set-up iusing Adams-Bashforth 3 (input.ab3\_c4).
  \item \texttt{advect\_xz} Two-dimensional (vertical plane) passive
    advection test on Cartesian grid.
- \item \texttt{tutorial\_tracer\_adjsens} Simple passive tracer
+ \item \texttt{aim.5l\_Equatorial\_Channel}
-   experiment. Includes derivative calculation. This experiment is
+   - 5-levels Intermediate Atmospheric physics,
-   described in detail in section \ref{sect:eg-simple-tracer}.
+D Equatorial Channel configuration.
- \item \texttt{flt\_example} Example of using float package.
- \item \texttt{global\_ocean.90x40x15} Global circulation with GM, flux
+ \item \texttt{aim.5l\_LatLon} - 5-levels Intermediate Atmospheric physics,
-   boundary conditions and poles.
+   Global configuration, on latitude longitude grid with 128x64x5 grid
+   points ($2.8^\circ$ resolution).
- \item \texttt{tutorial\_global\_oce\_in\_p} Global circulation in
-   pressure coordinate (non-Boussinesq ocean model). Described in
+ \item \texttt{aim.5l\_cs} - 5-levels Intermediate Atmospheric physics,
-   detail in section \ref{sect:eg-globalpressure}.
+   Global configuration on cube sphere grid
+   (32x32 grid points per face, roughly $2.8^\circ$).\\
- \item \texttt{solid-body.cs-32x32x1} Solid body rotation test for cube
+   Also contains an additional set-up with an ocean mixed layer and thermodynamics
-   sphere grid.
+   sea-ice (input.thSI).
- \item \texttt{tutorial\_plume\_on\_slope} Gravity Plume on a
-   continental slope.  This experiment is described in detail in
-   section \ref{sect:eg-gravityplume}.
- \item \texttt{tutorial\_global\_oce\_biogeo} Ocean model coupled to
-   the dissolved inorganic carbon biogeochemistry model. This
-   experiment is described in detail in section
-   \ref{sect:eg-biogeochem_tutorial}.
- \item \texttt{tutorial\_global\_oce\_optim} Global ocean state
-   estimation at $4^\circ$ resolution.  This experiment is described in
-   detail in section \ref{sect:eg-global_state_estimate}.
- \item \texttt{tutorial\_offline} Offline form of the MITgcm to study
-   advection of a passive tracer.  This experiment is described in
-   detail in section \ref{sect:eg-offline}.
- \item \texttt{rotating\_tank} Rotating tank simulation in cylindrical
-   coordinates.  This experiment is described in detail in section
-   \ref{sect:eg-tank}.
- \item \texttt{MLAdjust} Simple test for different viscosity formulations.
+ \item \texttt{biogeo} (to be removed)
  \item \texttt{bottom\_ctrl\_5x5} Adjoint test using the bottom
    topography as the control parameter.
-Line 143 
 Each example is briefly described below.
+Line 117 
 Each example is briefly described below.
  \item \texttt{cfc\_example} Global ocean with online computation and
    advection of CFC11 and CFC12.
+ \item \texttt{cpl\_aim+ocn}
+ \item \texttt{cpl\_atm2d+ocn}
+ \item \texttt{deep\_anelastic}
  \item \texttt{dome} Idealized 3D test of a density-driven bottom current.
- \item \texttt{exp2} Old version of the global ocean experiment.
+ \item \texttt{exp2} Old version of the global ocean experiment (no GM,
+       no partial-cells).\\
+   Also contains an additional set-up with ridid-lid (input.rigidLid).
+ \item \texttt{exp4} - Flow over a Gaussian bump in open-water or
+   channel with open boundaries.
  \item \texttt{exp5} Deep convection.
- \item \texttt{fizhi-cs-32x32x10} Global atmospheric simulation with
+ \item \texttt{fizhi-cs-32x32x40} Global atmospheric simulation with
    realistic topography, 10 vertical levels, a cubed sphere grid and
    the full atmospheric physics package.
-Line 162 
 Each example is briefly described below.
+Line 147 
 Each example is briefly described below.
    Held-Suarez (1994) forcing, with the physical forcing and the
    dynamical forcing running on different vertical grids.
+ \item \texttt{flt\_example} Example of using float package.
+ \item \texttt{front\_relax} - Relaxation of an ocean thermal front
+   (test for Gent/McWilliams scheme). 2D (Y-Z).
+ \item \texttt{global1x1\_tot} ECCO-GODAE production configuration
+  version 1, 2 \& 3
+ \item \texttt{global2x2\_tot} ECCO production configuration version 0
+ \item \texttt{global\_ocean.90x40x15} Global ocean simulation at 4x4
+   degree resolution. Similar to tutorial\_global\_oce\_latlon, with
+   quasi-non-hydrostatics and non-hydrostatic metric terms.\\
+   Also contains an adjoint set-up (code\_ad, input\_ad).
  \item \texttt{global\_ocean.cs32x15} Global ocean experiment on the
-   cubed sphere grid, using thermodynamic sea ice and bulk force
+   cubed sphere grid.\\
-   packages.
+   Also contains additional set-ups:
+   \begin{enumerate}
+    \item non-hydrostratic with biharmonic viscosity (input.viscA4)
+    \item using thermodynamic sea ice and bulk force (input.thsice)
+    \item using thermodynamic (pkg/thsice) dynamics (pkg/seaice) sea-ice
+          and exf pkg (input.icedyn)
+   \end{enumerate}
  \item \texttt{global\_ocean\_ebm} Global ocean experiment on a lat-lon
    grid coupled to an atmospheric energy balance model. Similar to
-Line 174 
 Each example is briefly described below.
+Line 180 
 Each example is briefly described below.
    grid using the exf package. Similar to global\_ocean.90x40x15
    experiment.
+ \item \texttt{hs94.128x64x5} - 3D atmosphere dynamics on lat-lon grid,
+   using Held and Suarez '94 forcing.
+ \item \texttt{hs94.1x64x5} - Zonal averaged atmosphere dynamics
+   using Held and Suarez '94 forcing.
  \item \texttt{hs94.cs-32x32x5} 3D atmosphere dynamics using Held and
    Suarez (1994) forcing on the cubed sphere. 5 vertical levels.
  \item \texttt{ideal\_2D\_oce} Idealized 2D global ocean simulation on
    an aqua planet.
+ \item \texttt{internal\_wave} - Ocean internal wave forced by open
+   boundary conditions.
  \item \texttt{inverted\_barometer} Simple test of ocean response to
    atmospheric pressure loading.
+ \item \texttt{isomip}
  \item \texttt{lab\_sea} Regional Labrador Sea simulation on a lat-lon
    grid. Coupled to the sea ice model.
  \item \texttt{matrix\_example} Test of experimental method to
    accelerated convergence towards equillibrium.
- \item \texttt{tutorial\_cfc\_offline} Offline form of the MITgcm to
+ \item \texttt{MLAdjust} Simple test for different viscosity formulations.
-   study advection of a passive tracer and CFCs.
+ \item \texttt{natl\_box} - Eastern subtropical North Atlantic with KPP
+   scheme; 1 month integration
+ \item \texttt{natl\_box\_adjoint}
+ \item \texttt{offline\_exf\_seaice}
+ \item \texttt{OpenAD}
+ \item \texttt{rotating\_tank} Rotating tank simulation in cylindrical
+   coordinates.  This experiment is described in detail in section
+   \ref{sect:eg-tank}.
+ \item \texttt{seaice\_obcs}
+ \item \texttt{solid-body.cs-32x32x1} Solid body rotation test for cube
+   sphere grid.
+ \item \texttt{tidal\_basin\_2d}
  \item \texttt{vermix} Simple test in a small domain (3 columns) for
    ocean vertical mixing schemes.
-Line 269 
 compile the code.
+Line 305 
 compile the code.
  \newpage
- \input{part3/case_studies/advection_in_gyre_circulation/adv_gyre.tex}
- \newpage
  \input{part3/case_studies/barotropic_gyre/baro.tex}
  \newpage
  \input{part3/case_studies/fourlayer_gyre/fourlayer.tex}
  \newpage
+ \input{part3/case_studies/advection_in_gyre_circulation/adv_gyre.tex}
+ \newpage
  \input{part3/case_studies/climatalogical_ogcm/climatalogical_ogcm.tex}
  \newpage
-Line 293 
 compile the code.
+Line 329 
 compile the code.
  \input{part3/case_studies/plume_on_slope/plume_on_slope.tex}
  \newpage
- \input{part3/case_studies/carbon_outgassing_sensitivity/co2sens.tex}
- \newpage
  \input{part3/case_studies/biogeochem_tutorial/biogeochem.tex}
  \newpage

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