| 219 |  |  | 
| 220 | \begin{itemize} | \begin{itemize} | 
| 221 |  |  | 
| 222 | \item Line 7, \begin{verbatim} viscAh=4.E2, \end{verbatim} this line sets | \item Line X, \begin{verbatim} viscAh=5.0E-6, \end{verbatim} this line sets | 
| 223 | the Laplacian friction coefficient to $400 m^2s^{-1}$ | the Laplacian friction coefficient to $0.000006 m^2s^{-1}$, which is ususally | 
| 224 |  | low because of the small scale, presumably.... qqq | 
| 225 |  |  | 
| 226 |  | \item Line X, \begin{verbatim}f0=0.5 , \end{verbatim} this line sets the | 
| 227 |  | coriolis term, and represents a tank spinning at qqq | 
| 228 | \item Line 10, \begin{verbatim} beta=1.E-11, \end{verbatim} this line sets | \item Line 10, \begin{verbatim} beta=1.E-11, \end{verbatim} this line sets | 
| 229 | $\beta$ (the gradient of the coriolis parameter, $f$) to $10^{-11} s^{-1}m^{-1}$ | $\beta$ (the gradient of the coriolis parameter, $f$) to $10^{-11} s^{-1}m^{-1}$ | 
| 230 |  |  | 
| 231 | \item Lines 15 and 16 | \item Lines 15 and 16 | 
| 232 | \begin{verbatim} | \begin{verbatim} | 
| 233 | rigidLid=.FALSE., | rigidLid=.TRUE., | 
| 234 | implicitFreeSurface=.TRUE., | implicitFreeSurface=.FALSE., | 
| 235 | \end{verbatim} | \end{verbatim} | 
| 236 | these lines suppress the rigid lid formulation of the surface |  | 
| 237 |  | these lines do the opposite of the following: | 
| 238 |  | suppress the rigid lid formulation of the surface | 
| 239 | pressure inverter and activate the implicit free surface form | pressure inverter and activate the implicit free surface form | 
| 240 | of the pressure inverter. | of the pressure inverter. | 
| 241 |  |  | 
| 247 | and implicitly suppresses searching for checkpoint files associated | and implicitly suppresses searching for checkpoint files associated | 
| 248 | with restarting an numerical integration from a previously saved state. | with restarting an numerical integration from a previously saved state. | 
| 249 |  |  | 
|  | \item Line 29, |  | 
|  | \begin{verbatim} |  | 
|  | endTime=12000, |  | 
|  | \end{verbatim} |  | 
|  | this line indicates that the experiment should start finish at $t=12000s$. |  | 
|  | A restart file will be written at this time that will enable the |  | 
|  | simulation to be continued from this point. |  | 
|  |  |  | 
| 250 | \item Line 30, | \item Line 30, | 
| 251 | \begin{verbatim} | \begin{verbatim} | 
| 252 | deltaTmom=1200, | deltaT=0.1, | 
| 253 | \end{verbatim} | \end{verbatim} | 
| 254 | This line sets the momentum equation timestep to $1200s$. | This line sets the integration timestep to $0.1s$.  This is an unsually | 
| 255 |  | small value among the examples due to the small physical scale of the | 
| 256 |  | experiment. | 
| 257 |  |  | 
| 258 | \item Line 39, | \item Line 39, | 
| 259 | \begin{verbatim} | \begin{verbatim} | 
| 260 | usingCartesianGrid=.TRUE., | usingCylindricalGrid=.TRUE., | 
| 261 | \end{verbatim} | \end{verbatim} | 
| 262 | This line requests that the simulation be performed in a | This line requests that the simulation be performed in a | 
| 263 | Cartesian coordinate system. | Cartesian coordinate system. | 
| 334 | This file uses standard default values and does not contain | This file uses standard default values and does not contain | 
| 335 | customizations for this experiment. | customizations for this experiment. | 
| 336 |  |  | 
| 337 | \subsubsection{File {\it input/windx.sin\_y}} | \subsubsection{File {\it input/thetaPol.bin}} | 
| 338 | \label{www:tutorials} | \label{www:tutorials} | 
| 339 |  |  | 
| 340 | The {\it input/windx.sin\_y} file specifies a two-dimensional ($x,y$) | The {\it input/thetaPol.bin} file specifies a three-dimensional ($x,y,z$) | 
| 341 | map of wind stress ,$\tau_{x}$, values. The units used are $Nm^{-2}$. | map of initial values of $\theta$ in degrees Celsius. | 
|  | Although $\tau_{x}$ is only a function of $y$n in this experiment |  | 
|  | this file must still define a complete two-dimensional map in order |  | 
|  | to be compatible with the standard code for loading forcing fields |  | 
|  | in MITgcm. The included matlab program {\it input/gendata.m} gives a complete |  | 
|  | code for creating the {\it input/windx.sin\_y} file. |  | 
| 342 |  |  | 
| 343 | \subsubsection{File {\it input/topog.box}} | \subsubsection{File {\it input/bathyPol.bin}} | 
| 344 | \label{www:tutorials} | \label{www:tutorials} | 
| 345 |  |  | 
| 346 |  |  | 
| 347 | The {\it input/topog.box} file specifies a two-dimensional ($x,y$) | The {\it input/bathyPol.bin} file specifies a two-dimensional ($x,y$) | 
| 348 | map of depth values. For this experiment values are either | map of depth values. For this experiment values are either | 
| 349 | $0m$ or {\bf -delZ}m, corresponding respectively to a wall or to deep | $0m$ or {\bf -delZ}m, corresponding respectively to outside or inside of | 
| 350 | ocean. The file contains a raw binary stream of data that is enumerated | the tank. The file contains a raw binary stream of data that is enumerated | 
| 351 | in the same way as standard MITgcm two-dimensional, horizontal arrays. | in the same way as standard MITgcm two-dimensional, horizontal arrays. | 
|  | The included matlab program {\it input/gendata.m} gives a complete |  | 
|  | code for creating the {\it input/topog.box} file. |  | 
| 352 |  |  | 
| 353 | \subsubsection{File {\it code/SIZE.h}} | \subsubsection{File {\it code/SIZE.h}} | 
| 354 | \label{www:tutorials} | \label{www:tutorials} |