s_examples/held_suarez_cs/inp_data.templ


%\subsubsection{File {\it input/data}}
%\label{www:tutorials}

This file, reproduced completely below, specifies the main parameters 
for the experiment. 
The parameters that are significant for this configuration are:

\begin{itemize}

\item Lines PUT_LINE_NB:tRef=,
\begin{verbatim} 
 tRef=295.2, 295.5, 295.9, 296.3, 296.7, 297.1, 297.6, 298.1, 298.7, 299.3,
\end{verbatim} 
$\cdots$ \\
set reference values for potential temperature (in Kelvin units) 
at each model level.
The entries are ordered like model level, from surface up to the top.
Density is calculated from anomalies at each level evaluated
with respect to the reference values set here.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R INI\_THETA}({\it ini\_theta.F})
\end{minipage}
}


\item Line PUT_LINE_NB:no_slip_sides=,
\begin{verbatim}
 no_slip_sides=.FALSE.,
\end{verbatim}
this line selects a free-slip lateral boundary condition for
the horizontal Laplacian friction operator 
e.g. $\frac{\partial u}{\partial y}$=0 along boundaries in $y$ and
$\frac{\partial v}{\partial x}$=0 along boundaries in $x$.

\item Lines PUT_LINE_NB:no_slip_bottom=,
\begin{verbatim}
 no_slip_bottom=.FALSE.,
\end{verbatim}
this line selects a free-slip boundary condition at the top,
in the vertical Laplacian friction operator 
e.g. $\frac{\partial u}{\partial p} = \frac{\partial v}{\partial p} = 0$

\item Line PUT_LINE_NB:buoyancyRelation=,
\begin{verbatim}
 buoyancyRelation='ATMOSPHERIC',
\end{verbatim}
this line sets the type of fluid and the type of vertical coordinate to use,
which, in this case, is air with a pressure like coordinate ($p$ or $p^*$).

\item Line PUT_LINE_NB:eosType=,
\begin{verbatim}
 eosType='IDEALGAS',
\end{verbatim}
Selects the Ideal gas equation of state.
%\\ \fbox{
%\begin{minipage}{5.0in}
%{\it S/R FIND\_RHO}~({\it find\_rho.F})\\
%{\it S/R FIND\_ALPHA}~({\it find\_alpha.F})
%\end{minipage}
%}

\item Line PUT_LINE_NB:implicitFreeSurface=,
\begin{verbatim}
 implicitFreeSurface=.TRUE.,
\end{verbatim}
Selects the way the barotropic equation is solved, using here the implicit 
free-surface formulation.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R SOLVE\_FOR\_PRESSURE}~({\it solve\_for\_pressure.F})
\end{minipage}
}

\item Line PUT_LINE_NB:exactConserv=,
\begin{verbatim}
 exactConserv=.TRUE.,
\end{verbatim}
Explicitly calculate again the surface pressure changes from 
the divergence of the vertically integrated horizontal flow,
after the implicit free surface solver and filters are applied.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R INTEGR\_CONTINUITY}~({\it integr\_continuity.F})
\end{minipage}
}

\item Line PUT_LINE_NB:nonlinFreeSurf=
 and Line PUT_LINE_NB:select_rStar=,
\begin{verbatim}
 nonlinFreeSurf=4,
 select_rStar=2,
\end{verbatim}
Select the Non-Linear free surface formulation, using $r^*$ vertical coordinate
(here $p^*$).
Note that, except for the default ($= 0$), other values of those 2 parameters
are only permitted for testing/debuging purpose.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R CALC\_R\_STAR}~({\it calc\_r\_star.F})\\
{\it S/R UPDATE\_R\_STAR}~({\it update\_r\_star.F})
\end{minipage}
}

\item Line PUT_LINE_NB:uniformLin_PhiSurf=
\begin{verbatim}
 uniformLin_PhiSurf=.FALSE.,
\end{verbatim}
Select the linear relation between surface geopotential anomaly 
and surface pressure anomaly to be evaluated from 
$\frac{\partial \Phi_s}{\partial p_s} = 1/\rho(\theta_{Ref})$
(see section \ref{sect:phi-freesurface}).
Note that using the default (=TRUE), the constant $1/\rho_0$ is
used instead, and is not necessary consistent with other 
parts of the geopotential that relies on $\theta_{Ref}$.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R INI\_LINEAR\_PHISURF}~({\it ini\_linear\_phisurf.F})
\end{minipage}
}

\item Line PUT_LINE_NB:saltStepping= and Line PUT_LINE_NB:momViscosity=
\begin{verbatim}
 saltStepping=.FALSE.,
 momViscosity=.FALSE.,
\end{verbatim}
Do not step forward Water vapour and do not compute viscous terms.
This allow to save some computer time.

\item Line PUT_LINE_NB:vectorInvariantMomentum=
\begin{verbatim}
 vectorInvariantMomentum=.TRUE.,
\end{verbatim}
Select the vector-invariant form to solve the momentum equation.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R MOM\_VECINV}~({\it mom\_vecinv.F})
\end{minipage}
}

\item Line PUT_LINE_NB:staggerTimeStep=
\begin{verbatim}
 staggerTimeStep=.TRUE.,
\end{verbatim}
Select the staggered time-stepping (rather than syncronous time stepping).

\item Line PUT_LINE_NB:readBinaryPrec= and PUT_LINE_NB:writeBinaryPrec=
\begin{verbatim}
 readBinaryPrec=64,
 writeBinaryPrec=64,
\end{verbatim}
Sets format for reading binary input datasets and writing output fields to
use 64-bit representation for floating-point numbers.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R READ\_WRITE\_FLD}~({\it read\_write\_fld.F})\\
{\it S/R READ\_WRITE\_REC}~({\it read\_write\_rec.F})
\end{minipage}
}

\item Line PUT_LINE_NB:cg2dMaxIters=,
\begin{verbatim}
 cg2dMaxIters=200,
\end{verbatim}
Sets maximum number of iterations the two-dimensional, conjugate
gradient solver will use, {\bf irrespective of convergence 
criteria being met}.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R CG2D}~({\it cg2d.F})
\end{minipage}
}

\item Line PUT_LINE_NB:cg2dTargetResWunit=,
\begin{verbatim}
 cg2dTargetResWunit=1.E-17,
\end{verbatim}
Sets the tolerance (in units of $\omega$) which the 
two-dimensional, conjugate gradient solver will use to test for convergence 
in equation \ref{EQ:eg-hs-congrad_2d_resid} to $1 \times 10^{-17} Pa/s$.
Solver will iterate until 
tolerance falls below this value or until the maximum number of
solver iterations is reached.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R CG2D}~({\it cg2d.F})
\end{minipage}
}

\item Line PUT_LINE_NB:deltaT=,
\begin{verbatim}
 deltaT=450.,
\end{verbatim}
Sets the timestep $\Delta t$ used in the model to
$450~{\rm s}$ ($= 1/8 {\rm h}$).
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R TIMESTEP}({\it timestep.F})\\
{\it S/R TIMESTEP\_TRACER}({\it timestep\_tracer.F})
\end{minipage}
}

\item Line PUT_LINE_NB:startTime=,
\begin{verbatim}
 startTime=124416000.,
\end{verbatim}
Sets the starting time, in seconds, for the model time counter.
A non-zero starting time requires to read the initial state
from a pickup file. By default the pickup file is named according 
to the integer number ({\it nIter0}) of time steps 
in the {\it startTime} value ($ nIter0 = startTime / deltaT $).

\item Line PUT_LINE_NB:#nTimeSteps=,
\begin{verbatim}
#nTimeSteps=69120,
\end{verbatim}
A commented out setting for the length of the simulation 
(in number of time-step) that corresponds to 1 year simulation.

\item Line PUT_LINE_NB:nTimeSteps= and PUT_LINE_NB:monitorFreq=,
\begin{verbatim}
 nTimeSteps=16,
 monitorFreq=1.,
\end{verbatim}
Sets the length of the simulation (in number of time-step)
and the frequency (in seconds) for "monitor" output.
to 16 iterations and 1 seconds respectively. This choice
corresponds to a short simulation test.

\item Line PUT_LINE_NB:pChkptFreq=,
\begin{verbatim}
 pChkptFreq=31104000.,
\end{verbatim}
Sets the time interval, in seconds, bewteen 2 consecutive 
"permanent" pickups ("permanent checkpoint frequency")
that are used to restart the simuilation, to 1 year.

\item Line PUT_LINE_NB:chkptFreq=,
\begin{verbatim}
 chkptFreq=2592000.,
\end{verbatim}
Sets the time interval, in seconds, bewteen 2 consecutive 
"temporary" pickups ("checkpoint frequency") to 1 month. 
The "temporary" pickup file name is alternatively "ckptA" 
and "ckptB" ; thoses pickup (as opposed to the permanent ones)
are designed to be over-written by the model as the simulation
progresses.

\item Line PUT_LINE_NB:dumpFreq=,
\begin{verbatim}
 dumpFreq=2592000.,
\end{verbatim}
Set the frequencies (in seconds) for the snap-shot output
to 1 month.

\item Line PUT_LINE_NB:#monitorFreq=,
\begin{verbatim}
#monitorFreq=43200.,
\end{verbatim}
A commented out line setting the frequency (in seconds) for the 
"monitor" output to 12.h. This frequency fits 
better the longer simulation of 1 year.

\item Line PUT_LINE_NB:usingCurvilinearGrid=,
\begin{verbatim}
 usingCurvilinearGrid=.TRUE.,
\end{verbatim}
Set the horizontal type of grid to Curvilinear-Grid.

\item Line PUT_LINE_NB:horizGridFile=,
\begin{verbatim}
 horizGridFile='grid_cs32',
\end{verbatim}
Set the root for the grid file name to "{\it grid\_cs32}".
The grid-file names are derived from the root, adding a 
suffix with the face number (e.g.: {\it .face001.bin}, 
{\it .face002.bin} $\cdots$ )
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R INI\_CURVILINEAR\_GRID}~({\it ini\_curvilinear\_grid.F})
\end{minipage}
}

\item Lines PUT_LINE_NB:delR= and PUT_LINE_NB:Ro_SeaLevel=,
\begin{verbatim}
 delR=20*50.E2,
 Ro_SeaLevel=1.E5,
\end{verbatim}
Those 2 lines define the vertical discretization, in pressure units.
The $1^{rst}$ one sets the increments in pressure units (Pa),
to 20 equally thick levels of $50 \times 10^2 {\rm Pa}$ each.
The $2^{nd}$ one sets the reference pressure at the sea-level, 
to $10^5 {\rm Pa}$. This define the origin (interface $k=1$) 
of the vertical pressure axis, with decreasing pressure 
as the level index $k$ increases.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R INI\_VERTICAL\_GRID}~({\it ini\_vertical\_grid.F})
\end{minipage}
}

\item Line PUT_LINE_NB:#topoFile=,
\begin{verbatim}
#topoFile='topo.cs.bin'
\end{verbatim}
This commented out line would allow to set the file name 
of a 2-D orography file, in meters units, to '{\it topo.cs.bin}'.
\\ \fbox{
\begin{minipage}{5.0in}
{\it S/R INI\_DEPTH}~({\it ini\_depth.F})
\end{minipage}
}

\end{itemize}

\noindent other lines in the file {\it input/data} are standard values
that are described in the MITgcm Getting Started and MITgcm Parameters
notes.
1	jmc	1.1
2			%\subsubsection{File {\it input/data}}
3			%\label{www:tutorials}
4
5			This file, reproduced completely below, specifies the main parameters
6			for the experiment.
7			The parameters that are significant for this configuration are:
8
9			\begin{itemize}
10
11			\item Lines PUT_LINE_NB:tRef=,
12			\begin{verbatim}
13			tRef=295.2, 295.5, 295.9, 296.3, 296.7, 297.1, 297.6, 298.1, 298.7, 299.3,
14			\end{verbatim}
15			$\cdots$ \\
16	jmc	1.2	set reference values for potential temperature (in Kelvin units)
17			at each model level.
18	jmc	1.1	The entries are ordered like model level, from surface up to the top.
19			Density is calculated from anomalies at each level evaluated
20			with respect to the reference values set here.
21			\\ \fbox{
22			\begin{minipage}{5.0in}
23			{\it S/R INI\_THETA}({\it ini\_theta.F})
24			\end{minipage}
25			}
26
27
28			\item Line PUT_LINE_NB:no_slip_sides=,
29			\begin{verbatim}
30			no_slip_sides=.FALSE.,
31			\end{verbatim}
32			this line selects a free-slip lateral boundary condition for
33			the horizontal Laplacian friction operator
34			e.g. $\frac{\partial u}{\partial y}$=0 along boundaries in $y$ and
35			$\frac{\partial v}{\partial x}$=0 along boundaries in $x$.
36
37			\item Lines PUT_LINE_NB:no_slip_bottom=,
38			\begin{verbatim}
39			no_slip_bottom=.FALSE.,
40			\end{verbatim}
41			this line selects a free-slip boundary condition at the top,
42			in the vertical Laplacian friction operator
43			e.g. $\frac{\partial u}{\partial p} = \frac{\partial v}{\partial p} = 0$
44
45			\item Line PUT_LINE_NB:buoyancyRelation=,
46			\begin{verbatim}
47			buoyancyRelation='ATMOSPHERIC',
48			\end{verbatim}
49			this line sets the type of fluid and the type of vertical coordinate to use,
50			which, in this case, is air with a pressure like coordinate ($p$ or $p^*$).
51
52			\item Line PUT_LINE_NB:eosType=,
53			\begin{verbatim}
54			eosType='IDEALGAS',
55			\end{verbatim}
56			Selects the Ideal gas equation of state.
57			%\\ \fbox{
58			%\begin{minipage}{5.0in}
59			%{\it S/R FIND\_RHO}~({\it find\_rho.F})\\
60			%{\it S/R FIND\_ALPHA}~({\it find\_alpha.F})
61			%\end{minipage}
62			%}
63
64			\item Line PUT_LINE_NB:implicitFreeSurface=,
65			\begin{verbatim}
66			implicitFreeSurface=.TRUE.,
67			\end{verbatim}
68			Selects the way the barotropic equation is solved, using here the implicit
69			free-surface formulation.
70			\\ \fbox{
71			\begin{minipage}{5.0in}
72			{\it S/R SOLVE\_FOR\_PRESSURE}~({\it solve\_for\_pressure.F})
73			\end{minipage}
74			}
75
76			\item Line PUT_LINE_NB:exactConserv=,
77			\begin{verbatim}
78			exactConserv=.TRUE.,
79			\end{verbatim}
80			Explicitly calculate again the surface pressure changes from
81			the divergence of the vertically integrated horizontal flow,
82			after the implicit free surface solver and filters are applied.
83			\\ \fbox{
84			\begin{minipage}{5.0in}
85			{\it S/R INTEGR\_CONTINUITY}~({\it integr\_continuity.F})
86			\end{minipage}
87			}
88
89			\item Line PUT_LINE_NB:nonlinFreeSurf=
90			and Line PUT_LINE_NB:select_rStar=,
91			\begin{verbatim}
92			nonlinFreeSurf=4,
93			select_rStar=2,
94			\end{verbatim}
95			Select the Non-Linear free surface formulation, using $r^*$ vertical coordinate
96			(here $p^*$).
97			Note that, except for the default ($= 0$), other values of those 2 parameters
98			are only permitted for testing/debuging purpose.
99			\\ \fbox{
100			\begin{minipage}{5.0in}
101			{\it S/R CALC\_R\_STAR}~({\it calc\_r\_star.F})\\
102			{\it S/R UPDATE\_R\_STAR}~({\it update\_r\_star.F})
103			\end{minipage}
104			}
105
106			\item Line PUT_LINE_NB:uniformLin_PhiSurf=
107			\begin{verbatim}
108			uniformLin_PhiSurf=.FALSE.,
109			\end{verbatim}
110			Select the linear relation between surface geopotential anomaly
111			and surface pressure anomaly to be evaluated from
112	jmc	1.2	$\frac{\partial \Phi_s}{\partial p_s} = 1/\rho(\theta_{Ref})$
113			(see section \ref{sect:phi-freesurface}).
114	jmc	1.1	Note that using the default (=TRUE), the constant $1/\rho_0$ is
115			used instead, and is not necessary consistent with other
116			parts of the geopotential that relies on $\theta_{Ref}$.
117			\\ \fbox{
118			\begin{minipage}{5.0in}
119			{\it S/R INI\_LINEAR\_PHISURF}~({\it ini\_linear\_phisurf.F})
120			\end{minipage}
121			}
122
123			\item Line PUT_LINE_NB:saltStepping= and Line PUT_LINE_NB:momViscosity=
124			\begin{verbatim}
125			saltStepping=.FALSE.,
126			momViscosity=.FALSE.,
127			\end{verbatim}
128			Do not step forward Water vapour and do not compute viscous terms.
129			This allow to save some computer time.
130
131			\item Line PUT_LINE_NB:vectorInvariantMomentum=
132			\begin{verbatim}
133			vectorInvariantMomentum=.TRUE.,
134			\end{verbatim}
135			Select the vector-invariant form to solve the momentum equation.
136			\\ \fbox{
137			\begin{minipage}{5.0in}
138			{\it S/R MOM\_VECINV}~({\it mom\_vecinv.F})
139			\end{minipage}
140			}
141
142			\item Line PUT_LINE_NB:staggerTimeStep=
143			\begin{verbatim}
144			staggerTimeStep=.TRUE.,
145			\end{verbatim}
146			Select the staggered time-stepping (rather than syncronous time stepping).
147
148			\item Line PUT_LINE_NB:readBinaryPrec= and PUT_LINE_NB:writeBinaryPrec=
149			\begin{verbatim}
150			readBinaryPrec=64,
151			writeBinaryPrec=64,
152			\end{verbatim}
153			Sets format for reading binary input datasets and writing output fields to
154			use 64-bit representation for floating-point numbers.
155			\\ \fbox{
156			\begin{minipage}{5.0in}
157			{\it S/R READ\_WRITE\_FLD}~({\it read\_write\_fld.F})\\
158			{\it S/R READ\_WRITE\_REC}~({\it read\_write\_rec.F})
159			\end{minipage}
160			}
161
162			\item Line PUT_LINE_NB:cg2dMaxIters=,
163			\begin{verbatim}
164			cg2dMaxIters=200,
165			\end{verbatim}
166			Sets maximum number of iterations the two-dimensional, conjugate
167			gradient solver will use, {\bf irrespective of convergence
168			criteria being met}.
169			\\ \fbox{
170			\begin{minipage}{5.0in}
171			{\it S/R CG2D}~({\it cg2d.F})
172			\end{minipage}
173			}
174
175			\item Line PUT_LINE_NB:cg2dTargetResWunit=,
176			\begin{verbatim}
177			cg2dTargetResWunit=1.E-17,
178			\end{verbatim}
179			Sets the tolerance (in units of $\omega$) which the
180			two-dimensional, conjugate gradient solver will use to test for convergence
181			in equation \ref{EQ:eg-hs-congrad_2d_resid} to $1 \times 10^{-17} Pa/s$.
182			Solver will iterate until
183			tolerance falls below this value or until the maximum number of
184			solver iterations is reached.
185			\\ \fbox{
186			\begin{minipage}{5.0in}
187			{\it S/R CG2D}~({\it cg2d.F})
188			\end{minipage}
189			}
190
191			\item Line PUT_LINE_NB:deltaT=,
192			\begin{verbatim}
193			deltaT=450.,
194			\end{verbatim}
195			Sets the timestep $\Delta t$ used in the model to
196			$450~{\rm s}$ ($= 1/8 {\rm h}$).
197			\\ \fbox{
198			\begin{minipage}{5.0in}
199			{\it S/R TIMESTEP}({\it timestep.F})\\
200			{\it S/R TIMESTEP\_TRACER}({\it timestep\_tracer.F})
201			\end{minipage}
202			}
203
204			\item Line PUT_LINE_NB:startTime=,
205			\begin{verbatim}
206			startTime=124416000.,
207			\end{verbatim}
208			Sets the starting time, in seconds, for the model time counter.
209			A non-zero starting time requires to read the initial state
210			from a pickup file. By default the pickup file is named according
211			to the integer number ({\it nIter0}) of time steps
212	jmc	1.2	in the {\it startTime} value ($ nIter0 = startTime / deltaT $).
213	jmc	1.1
214			\item Line PUT_LINE_NB:#nTimeSteps=,
215			\begin{verbatim}
216			#nTimeSteps=69120,
217			\end{verbatim}
218			A commented out setting for the length of the simulation
219			(in number of time-step) that corresponds to 1 year simulation.
220
221			\item Line PUT_LINE_NB:nTimeSteps= and PUT_LINE_NB:monitorFreq=,
222			\begin{verbatim}
223			nTimeSteps=16,
224			monitorFreq=1.,
225			\end{verbatim}
226			Sets the length of the simulation (in number of time-step)
227			and the frequency (in seconds) for "monitor" output.
228			to 16 iterations and 1 seconds respectively. This choice
229			corresponds to a short simulation test.
230
231			\item Line PUT_LINE_NB:pChkptFreq=,
232			\begin{verbatim}
233			pChkptFreq=31104000.,
234			\end{verbatim}
235			Sets the time interval, in seconds, bewteen 2 consecutive
236			"permanent" pickups ("permanent checkpoint frequency")
237			that are used to restart the simuilation, to 1 year.
238
239			\item Line PUT_LINE_NB:chkptFreq=,
240			\begin{verbatim}
241			chkptFreq=2592000.,
242			\end{verbatim}
243			Sets the time interval, in seconds, bewteen 2 consecutive
244			"temporary" pickups ("checkpoint frequency") to 1 month.
245			The "temporary" pickup file name is alternatively "ckptA"
246	jmc	1.2	and "ckptB" ; thoses pickup (as opposed to the permanent ones)
247			are designed to be over-written by the model as the simulation
248			progresses.
249	jmc	1.1
250			\item Line PUT_LINE_NB:dumpFreq=,
251			\begin{verbatim}
252			dumpFreq=2592000.,
253			\end{verbatim}
254			Set the frequencies (in seconds) for the snap-shot output
255			to 1 month.
256
257			\item Line PUT_LINE_NB:#monitorFreq=,
258			\begin{verbatim}
259			#monitorFreq=43200.,
260			\end{verbatim}
261			A commented out line setting the frequency (in seconds) for the
262	jmc	1.2	"monitor" output to 12.h. This frequency fits
263	jmc	1.1	better the longer simulation of 1 year.
264
265			\item Line PUT_LINE_NB:usingCurvilinearGrid=,
266			\begin{verbatim}
267			usingCurvilinearGrid=.TRUE.,
268			\end{verbatim}
269			Set the horizontal type of grid to Curvilinear-Grid.
270
271			\item Line PUT_LINE_NB:horizGridFile=,
272			\begin{verbatim}
273			horizGridFile='grid_cs32',
274			\end{verbatim}
275			Set the root for the grid file name to "{\it grid\_cs32}".
276			The grid-file names are derived from the root, adding a
277			suffix with the face number (e.g.: {\it .face001.bin},
278			{\it .face002.bin} $\cdots$ )
279			\\ \fbox{
280			\begin{minipage}{5.0in}
281			{\it S/R INI\_CURVILINEAR\_GRID}~({\it ini\_curvilinear\_grid.F})
282			\end{minipage}
283			}
284
285			\item Lines PUT_LINE_NB:delR= and PUT_LINE_NB:Ro_SeaLevel=,
286			\begin{verbatim}
287			delR=20*50.E2,
288			Ro_SeaLevel=1.E5,
289			\end{verbatim}
290			Those 2 lines define the vertical discretization, in pressure units.
291			The $1^{rst}$ one sets the increments in pressure units (Pa),
292			to 20 equally thick levels of $50 \times 10^2 {\rm Pa}$ each.
293			The $2^{nd}$ one sets the reference pressure at the sea-level,
294			to $10^5 {\rm Pa}$. This define the origin (interface $k=1$)
295			of the vertical pressure axis, with decreasing pressure
296			as the level index $k$ increases.
297			\\ \fbox{
298			\begin{minipage}{5.0in}
299			{\it S/R INI\_VERTICAL\_GRID}~({\it ini\_vertical\_grid.F})
300			\end{minipage}
301			}
302
303			\item Line PUT_LINE_NB:#topoFile=,
304			\begin{verbatim}
305			#topoFile='topo.cs.bin'
306			\end{verbatim}
307			This commented out line would allow to set the file name
308			of a 2-D orography file, in meters units, to '{\it topo.cs.bin}'.
309			\\ \fbox{
310			\begin{minipage}{5.0in}
311			{\it S/R INI\_DEPTH}~({\it ini\_depth.F})
312			\end{minipage}
313			}
314
315			\end{itemize}
316
317			\noindent other lines in the file {\it input/data} are standard values
318			that are described in the MITgcm Getting Started and MITgcm Parameters
319			notes.