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changed for new directory path:
s/\\input part3\/case_studies\/.*$/&}/
s/\\input part3\/case_studies\//\\input{part3\/case_studies\//
#-rename tutorial doc dir to match MITgcm/verification dir:
s/part3\/case_studies\/advection_in_gyre_circulation\//s_examples\/advection_in_gyre\//
s/part3\/case_studies\/biogeochem_tutorial\//s_examples\/global_oce_biogeo\//
s/part3\/case_studies\/climatalogical_ogcm\//s_examples\/global_oce_latlon\//
s/part3\/case_studies\/doubly_periodic_convection\//s_examples\/deep_convection\//
s/part3\/case_studies\/fourlayer_gyre\//s_examples\/baroclinic_gyre\//
s/part3\/case_studies\/global_oce_estimation\//s_examples\/global_oce_optim\//
s/part3\/case_studies\/offline\//s_examples\/cfc_offline\//
s/part3\/case_studies\/ogcm_in_pressure\//s_examples\/global_oce_in_p\//
s/part3\/case_studies\/sens_airsea_tracer\//s_examples\/tracer_adjsens\//
#----------------------------------------
s/part3\/case_studies\/barotropic_gyre\//s_examples\/barotropic_gyre\//
s/\\input{part3\/case_studies\//\\input{s_examples\//g
/\\include{part3\/case_studies\//s/{part3\/case_studies\//{s_examples\//g
/\\includegraphics.*{part3\/case_studies\//s/{part3\/case_studies\//{s_examples\//g
/\\epsfbox.*{part3\/case_studies\//s/{part3\/case_studies\//{s_examples\//g
| 1 | jmc | 1.1 | |
| 2 | %\subsubsection{File {\it input/data.pkg}} | ||
| 3 | %\label{www:tutorials} | ||
| 4 | |||
| 5 | This file, reproduced completely below, specifies the additional | ||
| 6 | packages that the model uses for the experiment. Note that some | ||
| 7 | packages are used by default (e.g.: {\it pkg/generic\_advdiff}) and | ||
| 8 | some others are selected according to parameter in {\it input/data} | ||
| 9 | (e.g.: {\it pkg/mom\_vecinv}). | ||
| 10 | The additional packages that are used for this configuration are | ||
| 11 | |||
| 12 | \begin{itemize} | ||
| 13 | |||
| 14 | \item Line PUT_LINE_NB:useSHAP_FILT=, | ||
| 15 | \begin{verbatim} | ||
| 16 | useSHAP_FILT=.TRUE., | ||
| 17 | \end{verbatim} | ||
| 18 | jmc | 1.2 | This line selects the Shapiro filter \cite{Shapiro_70} |
| 19 | jmc | 1.1 | ({\it pkg/shap\_filt}) to be used in this experiment. |
| 20 | |||
| 21 | \item Line PUT_LINE_NB:usediagnostics=, | ||
| 22 | \begin{verbatim} | ||
| 23 | usediagnostics=.TRUE., | ||
| 24 | \end{verbatim} | ||
| 25 | This line selects the {\it pkg/diagnostics} | ||
| 26 | to be used in this experiment. | ||
| 27 | |||
| 28 | \item Line PUT_LINE_NB:#useMNC=, | ||
| 29 | \begin{verbatim} | ||
| 30 | #useMNC=.TRUE., | ||
| 31 | \end{verbatim} | ||
| 32 | This line that would selects the {\it pkg/mnc} for I/O | ||
| 33 | is commented out. | ||
| 34 | |||
| 35 | \end{itemize} | ||
| 36 | |||
| 37 | The entire file {\it input/data.pkg} is reproduced here below: | ||
| 38 | |||
| 39 | jmc | 1.3 | \begin{small} |
| 40 | jmc | 1.4 | \input{s_examples/held_suarez_cs/input/data.pkg} |
| 41 | jmc | 1.3 | \end{small} |
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