@Article{Adcroft97,
  author  = "A.Adcroft and C.Hill and J.Marshall",
  title   = "{Representation of topography by shaved cells in a height coordinate ocean model}",
  journal = MWR,
  year    = "1997",
  vol     = "125",
  pages   = "2293-2315",
}

@Article{Arvind95,
  author = "Shaw, A. and Cho, K-C and Hill, C. and Johnson, R. P. and Marshall, J. and Arvind",
  title = "{A comparison of implicitly parallel multithreaded and data parallel implementations
           of an ocean model based on the Navier-Stokes equations}",
  journal = JPDC,
  year    = "1998",
  vol     = "48, No 1",
  pages   = "1-51"
}

@Manual{ASCI,
  key = "ASCI",
  title = "{Accelerated Strategic Computing Initiative, a program of the
            Department of Energy.}",
  note   = "available from http://www.llnl.gov/asci-alliances/"
}

@Article{Bryan84,
  author = "K.Bryan",
  title = "{Accelerating convergence to equilibrium of ocean-climate models}",
  journal = JPO,
  year    = "1984",
  vol     = "14",
  pages   = "666-673"
}

@inProceedings{Chien97,
  author = "A.Chien and S.Pakin and M.Lauria and M.Buchanan and K.Hane and 
            L.Giannini and J.Prusakova",
  title = "{High performance virtual machines (HPVM): Clusters with
           supercomputing APIs and performance}",
  year    = "1997",
  month   = "March",
  booktitle =    "{Proceedings of the Eigth SIAM Conference on Parallel Processing 
                   for Scientific Computing}"
}

@Manual{CMI,
  title = "{MIT Center for Global Change Science Climate Modeling Initiative}",
  note = "see http://web.mit.edu/cgcs/www/cmi.html",
  }


@Book{Cray91,
  key   =        "Cray91",
  title =        "{The CRAY Y/MP C-90 Supercomputer System}",
  publisher =    "Cray Research Inc., Eagan, MN",
  year =         1991,
  author    =    "Cray"
}

@Book{Cray90,
  title =        "{CF77 Compiling System}",
  year =         1990,
  author    =    "Cray Research Inc.",
  publisher =    "Cray Research Inc. Eagan, MN",
  volume    = "4: Parallel Processing Guide",
}

@Manual{ESS,
  key = "ESS",
  title = "{Frontier Research System for Global Change.
            Earth Simulator Program.}",
  note   = "available from http://www.frontier.esto.or.jp",
}

@inProceedings{FM2,
  author = "M.Lauria and A.Chien",
  title = "{Efficient Layering for high speed communication:
           Fast Messages 2.x}",  
  year    = "1998",
  booktitle =    "{Proceedings of High-Performance Distributed Computing Conference}",
}

@inProceedings{Gab97,
  author = "George A. Boughton",
  title = "{Arctic Switch Fabric}",  year    = "1997",
  month   = "June",
  booktitle =    "{Proceedings of the 1997 Parallel Computing,
                   Routing and Communications Workshop}"
}

@techreport{Giering,
  author  = "R.Giering and T.Kaminski",
  title   = "{Recipes for Adjoint Code Construction}",
  institution = "Max-Planck-Institute for Meteorology",
  year = "1996",
  number = "212"
}


@Article{Gillett96,
  author =      "R.B.Gillett",
  title =       "{Memory Channel network for PCI}",
  journal  = "IEEE Micro",
  year     = "1996",
  volume   = "16(1)",
  pages    = "12-18",
  month    = "Feburary",
}

@Article{GM90,
  author =      "P.Gent and J.McWilliams",
  title =       "{Isopycnal mixing in ocean circulation models}",
  journal  = JPO,
  year     = "1990",
  volume   = "20",
  pages    = "150-155",
}

@Article{Green70,  
  author =      "J.S.A.Green",
  title =       "{Transfer properties of the large-scale eddies
                  and the general circulation of the atmosphere.}",
  journal  = QJRMS,
  year     = "1970",
  volume   = "96",
  pages    = "157-185",
}

@Article{Haine98,
  author =      "T.Haine and J.Marshall",
  title =       "{Gravitational, symmetric and baroclinic instability of the
                  ocean mixed layer}",
  journal  = JPO,
  year     = "1998",
  volume   = "28",
  pages    = "634-658"
}

@Book{Halt79,
  author =       "G.Haltiner and R.Williams",
  title =        "{Numerical Predicion and Dynamic Meteorology}",
  publisher =    "Wiley",
  year =         1979,
  edition =      "2nd"

}

@Article{Harlow65,
  author =       "F.H.Harlow and J.E.Welch",
  title =        "Numerical calculation of time-dependent viscous
                  incompressible flow",
  journal =      "Phys. Fluids",
  year =         1965,
  volume =       8,
  pages =        "2182"
}


@techreport{Hoe96,
  author  = "J.C.Hoe and M.Ehrlich",
  title   = "{StarT-Jr: A Parallel System for Commodity Technology}",
  institution = "MIT LCS",
  year = "1996",
  number = "CSG Memo 384"
}


@inproceedings{Hoe98,
  author    =    "J.C.Hoe",
  title =        "{Start-X: A One-Man-Year Exercise in Network Interface Engineering}",
  year =         1998,
  booktitle =    "{Proceedings of Hot Interconnects VI}",
}


@Manual{HPF,
  title   = "{High Performance FORTRAN Language Specification Version 1.0}",
  organization = {H.P.F Forum},
  year = {1993},
}


@Manual{IEEE98,
  title = "Network Interfaces",
  organization = {IEEE Computer },
  year =        "1998",
  volume =      "31, No. 11",
  month =       "November",
}

@Manual{IMC,
  title   = "{MEMORY CHANNEL Application Programming Interface}",
  organization = {Digital Equipment Corporation },
  year = {1998},
}

@inProceedings{IPC,
  author  = "{D.L.Presotto and D.M.Ritchie}",
  title   = "{Interporcess Communications in the Ninth Edition UNIX System}",
  year = {1990},
  booktitle = "{UNIX Research System Papers}",
  pages = "{523-530}",
  volume = "{II}"
}

@inproceedings{KeLP,
  author =       "S.Fink and S.Baden and S.Kohn",
  title =        "Flexible communication mechanisms for dynamic structured
                  applications",
  year =         1996,
  booktitle =    "{Proc. 3rd Int'l Workshop IRREGULAR '96 }",
  month     = "August",
}

@Article{Large94,
  author =      "W.G.Large and J.C.McWilliams and S.C.Doney",
  title =       "{Oceanic vertical mixing. a review and a model with nonlocal
                  boundary layer parameterization}",
  journal  = "{Rev. Geophys}",
  year     = "1994",
  volume   = 32,
  pages    = "363-403",
}

@techReport{Levitus82,
  author =      "S.Levitus",
  title =       "{Climatological Atlas of the World Ocean}",
  institution = "U.S. Department of Commerce",
  year = "1982",
  number = "NOAA Prof. Paper 13",
}

@techReport{Levitus94,
  author =      "S.Levitus and T.P.Boyer and R.Burgett",
  title =       "{World Ocean Atlas 1994}",
  institution = "U.S. Department of Commerce",
  year = "1994",
}

@Article{Mac96,
  author =      "A.M.Macdonald and C.Wunsch",
  title =       "{An estimate of global circulation and heat fluxes}",
  journal  = "Nature",
  year     = "1996",
  vol      = "382",
 pages     = "436-439"
}

@Article{Marotzke99,
  author =      "J.Marotzke and R.Giering and K.Q.Zhang and
                 D.Stammer and C.Hill and T.Lee",
  title =       "{Construction of the Adjoint MIT Ocean General Circulation
                 Model and Application to Atlantic Heat Transport Sensitivity}",
  journal  = JGR,
  year     = "1999",
  month    = "submitted"
}


@Article{Marshall97a,
  author =      "Marshall, J. and Hill, C. and Perelman, L. and Adcroft, A.",
  title =       "{Hydrostatic, quasi-hydrostatic and non-hydrostatic ocean 
                  modeling}",
  journal  = JGR,
  year     = "1997",
  volume =       "102(C3)",
  pages =        "5733-5752"
}

@Article{Marshall97b,
  author =      "Marshall, J. and Adcroft, A. and Hill, C. and Perelman, L.",
  title =       "{A finite-volume, incompressible Navier-Stokes model for 
                 studies of the ocean on parallel computers}",
  journal = JGR,
  year =        "1997",
  volume =       "102(C3)",
  pages =        "5753-5766"
}

@Article{Marshall98,
  author =      "J.Marshall and H.Jones and C.Hill",
  title =       "{Efficient ocean modeling using non-hydrostatic algorithms}",
  journal = JMS,
  year =        "1998",
  volume =       "18",
  pages =        "115-134"
}

@Manual{MMAP,
  key = "MMAP",
  title   = "{Operating System API Reference, UNIX SVR4.2}",
  organisation = "{UNIX System Laboratories}",
  year = {1992},
  publisher = "{Unix Press, Prentice-Hall}",
}

@Manual{Molteni99,
  author  = "{F.Molteni}",
  title   = "{Development of simplified pametrization schemes for a 5-level
primitive-equation model of the atmospheric circulation.}",
  organization = {CINECA},
  year = {1999},
  note  = "{available from http://www.cineca.it/adamo/doc/pe5l\_param.html}",
}

@Manual{MPI,
  title   = "{MPI: A Message-Passing Interface Standard}",
  organization = {Message Passing Inerface Forum},
  year = {1994},
  note  = "available from http://www.mpi-forum.org/",
}

@Manual{MPI2,
  title   = "{MPI-2: Extensions to the Message-Passing Interface}",
  organization = {Message Passing Inerface Forum},
  year = {1997},
  note  = "available from http://www.mpi-forum.org/",
}

@Article{Mukherjee98,
  author =      "S.S.Mukherjee and M.D.Hill",
  title =       "{Making Network Interfaces Less Peripheral}",
  journal = "IEEE Computer",
  year =        "1998",
  month =       "October",
}

@Article{Numrich97,
  author =      "R.W.Numrich and J.L.Steidel",
  title =       "{F--: A simple parallel extension to Fortran 90}",
  journal = "SIAM News",
  year =        "1997",
  volume =       "30",
}

@Article{Numrich98,
  author =      "R.W.Numrich and J.Reid",
  title =       "{Co-Array Fortran for Parallel Programming}",
  journal = "ACM Fortran Forum",
  year =        "1998",
  month =        "August",
  volume =       "17, no 2",
  pages  =       "1-31"
}

@techReport{Oberhuber88,
  author =      "J.M.Oberhuber",
  title =       "{An atlas based on the 'COADS' data set}",
  institution = "Max-Planck-Institute for Meteorology",
  year = "1988",
  number = "Rep 15",
}

@Manual{OpenMP,
  title   = "{OpenMP Fortran Application Program Interface, Version 1.0}",
  organization = {The OpenMP Forum},
  year = {1997},
  month = "October",
  note  = "available from http://www.openmp.org/",
}

@Manual{PC++,
  author    =    "D.Gannon and S.X.Yang and P.Beckman",
  title =        "User Guide for a Portable Parallel C++ Programming Systems
                  pC++",
  year =         1994,
  organization = "Department of Computer Science and CICA"
}


@Article{Perry96,
  author =      "G.D.Perry and P.B.Duffy and N.L.Miller",
  title =       "{An extended dataset of river discharges
                  for validation of general circulation models}",
  journal  = JGR,
  year     = "1996",
  volume   = 101,
  pages    = "21339-21349",
}


@Book{Pfi97,
  title =        "{In Search of Clusters}",
  year =         1995,
  author    =    "G.F.Pfister",
  publisher =    "Prentice Hall",
}

@Article{Schmitt89,
  author =      "R.W.Schmitt and P.S.Bogden and C.E.Dorman",
  title =       "{Evaporation minus precipitation and
                  density fluxes for the North Atlantic}",
  journal  = JPO,
  year     = "1989",
  volume   = 19,
  pages    = "1208-1221",
}

@Manual{SCI,
  title   = "{Standard for Scalable Coherent Interface (SCI) Specification}",
  organization = {IEEE},
  year = {1993},
  month = {August},
  number = "ISBN 1-55937-222-2",
  note  = "IEEE Std. 1596-1992",
}

@inproceedings{Seitz94,
  author    =    "C.Seitz",
  title =        "Myrinet - a gigabit per seond local area network",
  year =         1994,
  booktitle =    "{Proceedings of Hot Interconnects}",
}

@Manual{shmem,
  author    =    "R.Barriuso and A.Knies",
  title =        "SHMEM Users Guide, Revision 2.0",
  year =         1994,
  month        = "May",
  organization = "Cray Research Inc.",
}

@techReport{Stammer98,
  author =      "D.Stammer and C.Wunsch and R.Giering and Q.Zhang and
                 J.Marotzke and J.Marshall and C.Hill",
  title =       "{The global ocean circulation estimated from TOPEX/POSEIDON
                  altimetry and a general circulation model}",
  year     = "1997",
 institution = "Center for Global Change Science, MIT",
 number = "No. 49",

}

@Article{Stone72,
  author =      "P.Stone",
  title =       "{A simplified radiative-dynamical model for the static stability
                  of rotating atmospheres}",
  journal  = JAS,
  year     = "1972",
  volume   = 29,
  pages    = "405-418",
}

@techreport{Suarez95,
 author = "M.Suarez and L.Takacs",
 title  = "Documentation of the ARIES/GEOS Dynamical Core",
 volume = 5,
 year = "1995",
 institution = "NASA",
 number = "Technical Memorandum 104606",
}

@inProceedings{threads,
  author =     "F.Muller",
  title =      "{A Library Implementation of POSIX Threads under UNIX}",
  year     = "1993",
  pages    = "29-41",
  booktitle = "Proceeding of the 1993 Winter USENIX CONFERENCE",
}

@Article{Tiedtke,
  author =      "M.Tiedtke",
  title =       "{A comprehensive mass flux scheme for cumulus
                  parameterization in large-scale models.}",
  journal  = MWR,
  year     = "1989",
  volume   = 117,
  pages    = "1779-1800",
}

@Article{Trenberth90,
  author =      "K.E.Trenberth and W.G.Large and J.G.Olson",
  title =       "{The mean annual cycle in global ocean wind stress}",
  journal  = JPO,
  year     = "1990",
  volume   = 20,
  pages    = "1742-1760",
}

@Article{Trenberth94,
  author =      "K.E.Trenberth and A.Soloman",
  title =       "{The global heat balance: heat transports in the atmosphere}",
  journal  = "Climate Dynamics",
  year     = "1994",
  volume   = 9,
  pages    = "107-134",
}

@inproceedings{Trenberth98,
  author =      "K.E.Trenberth",
  title =       "{The heat budget of the atmosphere and ocean}",
  booktitle = "Proc. First Intl. Conf. on Reanalyses",
  year     = "1997",
  pages    = "27-31",
  publisher = "Silver Spring MD",
}

@Manual{VIA1.0,
  title   = "{The Virtual Interface Architecture Specification 1.0}",
  organization = {Intel, Compaq and Microsoft},
  year = {1997},
  month = {December},
  note  = "http://www.viarch.org"
}

@Manual{White95,
  title   = "{MIT General Circulation Model: Isomorphisms.}",
  organization = {MIT},
  year = {1995},
  note  = "MIT/EAPS Internal Memo"
}


@Article{Zhang99,
  author =      "R.Zhang and M.Follows and J.Grotzinger and J.Marshall",
  title =       "{Could the Late Permian Ocean have been Anoxic}",
  journal  = "Science",
  year     = "1999",
  month    = "submitted"
}