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| 2 | @Article{Adcroft97, | 
| 3 | author  = "A.Adcroft and C.Hill and J.Marshall", | 
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| 5 | journal = MWR, | 
| 6 | year    = "1997", | 
| 7 | vol     = "125", | 
| 8 | pages   = "2293-2315", | 
| 9 | } | 
| 10 |  | 
| 11 | @Article{Arvind95, | 
| 12 | author = "Shaw, A. and Cho, K-C and Hill, C. and Johnson, R. P. and Marshall, J. and Arvind", | 
| 13 | title = "{A comparison of implicitly parallel multithreaded and data parallel implementations | 
| 14 | of an ocean model based on the Navier-Stokes equations}", | 
| 15 | journal = JPDC, | 
| 16 | year    = "1998", | 
| 17 | vol     = "48, No 1", | 
| 18 | pages   = "1-51" | 
| 19 | } | 
| 20 |  | 
| 21 | @Manual{ASCI, | 
| 22 | key = "ASCI", | 
| 23 | title = "{Accelerated Strategic Computing Initiative, a program of the | 
| 24 | Department of Energy.}", | 
| 25 | note   = "available from http://www.llnl.gov/asci-alliances/" | 
| 26 | } | 
| 27 |  | 
| 28 | @Article{Bryan84, | 
| 29 | author = "K.Bryan", | 
| 30 | title = "{Accelerating convergence to equilibrium of ocean-climate models}", | 
| 31 | journal = JPO, | 
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| 33 | vol     = "14", | 
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| 35 | } | 
| 36 |  | 
| 37 | @inProceedings{Chien97, | 
| 38 | author = "A.Chien and S.Pakin and M.Lauria and M.Buchanan and K.Hane and | 
| 39 | L.Giannini and J.Prusakova", | 
| 40 | title = "{High performance virtual machines (HPVM): Clusters with | 
| 41 | supercomputing APIs and performance}", | 
| 42 | year    = "1997", | 
| 43 | month   = "March", | 
| 44 | booktitle =    "{Proceedings of the Eigth SIAM Conference on Parallel Processing | 
| 45 | for Scientific Computing}" | 
| 46 | } | 
| 47 |  | 
| 48 | @Manual{CMI, | 
| 49 | title = "{MIT Center for Global Change Science Climate Modeling Initiative}", | 
| 50 | note = "see http://web.mit.edu/cgcs/www/cmi.html", | 
| 51 | } | 
| 52 |  | 
| 53 |  | 
| 54 | @Book{Cray91, | 
| 55 | key   =        "Cray91", | 
| 56 | title =        "{The CRAY Y/MP C-90 Supercomputer System}", | 
| 57 | publisher =    "Cray Research Inc., Eagan, MN", | 
| 58 | year =         1991, | 
| 59 | author    =    "Cray" | 
| 60 | } | 
| 61 |  | 
| 62 | @Book{Cray90, | 
| 63 | title =        "{CF77 Compiling System}", | 
| 64 | year =         1990, | 
| 65 | author    =    "Cray Research Inc.", | 
| 66 | publisher =    "Cray Research Inc. Eagan, MN", | 
| 67 | volume    = "4: Parallel Processing Guide", | 
| 68 | } | 
| 69 |  | 
| 70 | @Manual{ESS, | 
| 71 | key = "ESS", | 
| 72 | title = "{Frontier Research System for Global Change. | 
| 73 | Earth Simulator Program.}", | 
| 74 | note   = "available from http://www.frontier.esto.or.jp", | 
| 75 | } | 
| 76 |  | 
| 77 | @inProceedings{FM2, | 
| 78 | author = "M.Lauria and A.Chien", | 
| 79 | title = "{Efficient Layering for high speed communication: | 
| 80 | Fast Messages 2.x}", | 
| 81 | year    = "1998", | 
| 82 | booktitle =    "{Proceedings of High-Performance Distributed Computing Conference}", | 
| 83 | } | 
| 84 |  | 
| 85 | @inProceedings{Gab97, | 
| 86 | author = "George A. Boughton", | 
| 87 | title = "{Arctic Switch Fabric}",  year    = "1997", | 
| 88 | month   = "June", | 
| 89 | booktitle =    "{Proceedings of the 1997 Parallel Computing, | 
| 90 | Routing and Communications Workshop}" | 
| 91 | } | 
| 92 |  | 
| 93 | @techreport{Giering, | 
| 94 | author  = "R.Giering and T.Kaminski", | 
| 95 | title   = "{Recipes for Adjoint Code Construction}", | 
| 96 | institution = "Max-Planck-Institute for Meteorology", | 
| 97 | year = "1996", | 
| 98 | number = "212" | 
| 99 | } | 
| 100 |  | 
| 101 |  | 
| 102 | @Article{Gillett96, | 
| 103 | author =      "R.B.Gillett", | 
| 104 | title =       "{Memory Channel network for PCI}", | 
| 105 | journal  = "IEEE Micro", | 
| 106 | year     = "1996", | 
| 107 | volume   = "16(1)", | 
| 108 | pages    = "12-18", | 
| 109 | month    = "Feburary", | 
| 110 | } | 
| 111 |  | 
| 112 | @Article{GM90, | 
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| 114 | title =       "{Isopycnal mixing in ocean circulation models}", | 
| 115 | journal  = JPO, | 
| 116 | year     = "1990", | 
| 117 | volume   = "20", | 
| 118 | pages    = "150-155", | 
| 119 | } | 
| 120 |  | 
| 121 | @Article{Green70, | 
| 122 | author =      "J.S.A.Green", | 
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| 124 | and the general circulation of the atmosphere.}", | 
| 125 | journal  = QJRMS, | 
| 126 | year     = "1970", | 
| 127 | volume   = "96", | 
| 128 | pages    = "157-185", | 
| 129 | } | 
| 130 |  | 
| 131 | @Article{Haine98, | 
| 132 | author =      "T.Haine and J.Marshall", | 
| 133 | title =       "{Gravitational, symmetric and baroclinic instability of the | 
| 134 | ocean mixed layer}", | 
| 135 | journal  = JPO, | 
| 136 | year     = "1998", | 
| 137 | volume   = "28", | 
| 138 | pages    = "634-658" | 
| 139 | } | 
| 140 |  | 
| 141 | @Book{Halt79, | 
| 142 | author =       "G.Haltiner and R.Williams", | 
| 143 | title =        "{Numerical Predicion and Dynamic Meteorology}", | 
| 144 | publisher =    "Wiley", | 
| 145 | year =         1979, | 
| 146 | edition =      "2nd" | 
| 147 |  | 
| 148 | } | 
| 149 |  | 
| 150 | @Article{Harlow65, | 
| 151 | author =       "F.H.Harlow and J.E.Welch", | 
| 152 | title =        "Numerical calculation of time-dependent viscous | 
| 153 | incompressible flow", | 
| 154 | journal =      "Phys. Fluids", | 
| 155 | year =         1965, | 
| 156 | volume =       8, | 
| 157 | pages =        "2182" | 
| 158 | } | 
| 159 |  | 
| 160 |  | 
| 161 | @techreport{Hoe96, | 
| 162 | author  = "J.C.Hoe and M.Ehrlich", | 
| 163 | title   = "{StarT-Jr: A Parallel System for Commodity Technology}", | 
| 164 | institution = "MIT LCS", | 
| 165 | year = "1996", | 
| 166 | number = "CSG Memo 384" | 
| 167 | } | 
| 168 |  | 
| 169 |  | 
| 170 | @inproceedings{Hoe98, | 
| 171 | author    =    "J.C.Hoe", | 
| 172 | title =        "{Start-X: A One-Man-Year Exercise in Network Interface Engineering}", | 
| 173 | year =         1998, | 
| 174 | booktitle =    "{Proceedings of Hot Interconnects VI}", | 
| 175 | } | 
| 176 |  | 
| 177 | @Article{Holland75, | 
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| 179 | title =        "On the Generation of Mesoscale Eddies and their contribution | 
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| 183 | volume =       5, | 
| 184 | pages =        "642-657" | 
| 185 | } | 
| 186 |  | 
| 187 | @Manual{HPF, | 
| 188 | title   = "{High Performance FORTRAN Language Specification Version 1.0}", | 
| 189 | organization = {H.P.F Forum}, | 
| 190 | year = {1993}, | 
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| 192 |  | 
| 193 |  | 
| 194 | @Manual{IEEE98, | 
| 195 | title = "Network Interfaces", | 
| 196 | organization = {IEEE Computer }, | 
| 197 | year =        "1998", | 
| 198 | volume =      "31, No. 11", | 
| 199 | month =       "November", | 
| 200 | } | 
| 201 |  | 
| 202 | @Manual{IMC, | 
| 203 | title   = "{MEMORY CHANNEL Application Programming Interface}", | 
| 204 | organization = {Digital Equipment Corporation }, | 
| 205 | year = {1998}, | 
| 206 | } | 
| 207 |  | 
| 208 | @inProceedings{IPC, | 
| 209 | author  = "{D.L.Presotto and D.M.Ritchie}", | 
| 210 | title   = "{Interporcess Communications in the Ninth Edition UNIX System}", | 
| 211 | year = {1990}, | 
| 212 | booktitle = "{UNIX Research System Papers}", | 
| 213 | pages = "{523-530}", | 
| 214 | volume = "{II}" | 
| 215 | } | 
| 216 |  | 
| 217 | @inproceedings{KeLP, | 
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| 220 | applications", | 
| 221 | year =         1996, | 
| 222 | booktitle =    "{Proc. 3rd Int'l Workshop IRREGULAR '96 }", | 
| 223 | month     = "August", | 
| 224 | } | 
| 225 |  | 
| 226 | @Article{Large94, | 
| 227 | author =      "W.G.Large and J.C.McWilliams and S.C.Doney", | 
| 228 | title =       "{Oceanic vertical mixing. a review and a model with nonlocal | 
| 229 | boundary layer parameterization}", | 
| 230 | journal  = "{Rev. Geophys}", | 
| 231 | year     = "1994", | 
| 232 | volume   = 32, | 
| 233 | pages    = "363-403", | 
| 234 | } | 
| 235 |  | 
| 236 | @techReport{Levitus82, | 
| 237 | author =      "S.Levitus", | 
| 238 | title =       "{Climatological Atlas of the World Ocean}", | 
| 239 | institution = "U.S. Department of Commerce", | 
| 240 | year = "1982", | 
| 241 | number = "NOAA Prof. Paper 13", | 
| 242 | } | 
| 243 |  | 
| 244 | @techReport{Levitus94, | 
| 245 | author =      "S.Levitus and T.P.Boyer and R.Burgett", | 
| 246 | title =       "{World Ocean Atlas 1994}", | 
| 247 | institution = "U.S. Department of Commerce", | 
| 248 | year = "1994", | 
| 249 | } | 
| 250 |  | 
| 251 | @Article{Mac96, | 
| 252 | author =      "A.M.Macdonald and C.Wunsch", | 
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| 254 | journal  = "Nature", | 
| 255 | year     = "1996", | 
| 256 | vol      = "382", | 
| 257 | pages     = "436-439" | 
| 258 | } | 
| 259 |  | 
| 260 | @Article{Marotzke99, | 
| 261 | author =      "J.Marotzke and R.Giering and K.Q.Zhang and | 
| 262 | D.Stammer and C.Hill and T.Lee", | 
| 263 | title =       "{Construction of the Adjoint MIT Ocean General Circulation | 
| 264 | Model and Application to Atlantic Heat Transport Sensitivity}", | 
| 265 | journal  = JGR, | 
| 266 | year     = "1999", | 
| 267 | month    = "submitted" | 
| 268 | } | 
| 269 |  | 
| 270 |  | 
| 271 | @Article{Marshall97a, | 
| 272 | author =      "Marshall, J. and Hill, C. and Perelman, L. and Adcroft, A.", | 
| 273 | title =       "{Hydrostatic, quasi-hydrostatic and non-hydrostatic ocean | 
| 274 | modeling}", | 
| 275 | journal  = JGR, | 
| 276 | year     = "1997", | 
| 277 | volume =       "102(C3)", | 
| 278 | pages =        "5733-5752" | 
| 279 | } | 
| 280 |  | 
| 281 | @Article{Marshall97b, | 
| 282 | author =      "Marshall, J. and Adcroft, A. and Hill, C. and Perelman, L.", | 
| 283 | title =       "{A finite-volume, incompressible Navier-Stokes model for | 
| 284 | studies of the ocean on parallel computers}", | 
| 285 | journal = JGR, | 
| 286 | year =        "1997", | 
| 287 | volume =       "102(C3)", | 
| 288 | pages =        "5753-5766" | 
| 289 | } | 
| 290 |  | 
| 291 | @Article{Marshall98, | 
| 292 | author =      "J.Marshall and H.Jones and C.Hill", | 
| 293 | title =       "{Efficient ocean modeling using non-hydrostatic algorithms}", | 
| 294 | journal = JMS, | 
| 295 | year =        "1998", | 
| 296 | volume =       "18", | 
| 297 | pages =        "115-134" | 
| 298 | } | 
| 299 |  | 
| 300 | @Manual{MMAP, | 
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| 304 | year = {1992}, | 
| 305 | publisher = "{Unix Press, Prentice-Hall}", | 
| 306 | } | 
| 307 |  | 
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| 310 | title   = "{Development of simplified pametrization schemes for a 5-level | 
| 311 | primitive-equation model of the atmospheric circulation.}", | 
| 312 | organization = {CINECA}, | 
| 313 | year = {1999}, | 
| 314 | note  = "{available from http://www.cineca.it/adamo/doc/pe5l\_param.html}", | 
| 315 | } | 
| 316 |  | 
| 317 | @Manual{MPI, | 
| 318 | title   = "{MPI: A Message-Passing Interface Standard}", | 
| 319 | organization = {Message Passing Inerface Forum}, | 
| 320 | year = {1994}, | 
| 321 | note  = "available from http://www.mpi-forum.org/", | 
| 322 | } | 
| 323 |  | 
| 324 | @Manual{MPI2, | 
| 325 | title   = "{MPI-2: Extensions to the Message-Passing Interface}", | 
| 326 | organization = {Message Passing Inerface Forum}, | 
| 327 | year = {1997}, | 
| 328 | note  = "available from http://www.mpi-forum.org/", | 
| 329 | } | 
| 330 |  | 
| 331 | @Article{Mukherjee98, | 
| 332 | author =      "S.S.Mukherjee and M.D.Hill", | 
| 333 | title =       "{Making Network Interfaces Less Peripheral}", | 
| 334 | journal = "IEEE Computer", | 
| 335 | year =        "1998", | 
| 336 | month =       "October", | 
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| 339 | @Article{Numrich97, | 
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| 341 | title =       "{F--: A simple parallel extension to Fortran 90}", | 
| 342 | journal = "SIAM News", | 
| 343 | year =        "1997", | 
| 344 | volume =       "30", | 
| 345 | } | 
| 346 |  | 
| 347 | @Article{Numrich98, | 
| 348 | author =      "R.W.Numrich and J.Reid", | 
| 349 | title =       "{Co-Array Fortran for Parallel Programming}", | 
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| 351 | year =        "1998", | 
| 352 | month =        "August", | 
| 353 | volume =       "17, no 2", | 
| 354 | pages  =       "1-31" | 
| 355 | } | 
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| 357 | @techReport{Oberhuber88, | 
| 358 | author =      "J.M.Oberhuber", | 
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| 360 | institution = "Max-Planck-Institute for Meteorology", | 
| 361 | year = "1988", | 
| 362 | number = "Rep 15", | 
| 363 | } | 
| 364 |  | 
| 365 | @Manual{OpenMP, | 
| 366 | title   = "{OpenMP Fortran Application Program Interface, Version 1.0}", | 
| 367 | organization = {The OpenMP Forum}, | 
| 368 | year = {1997}, | 
| 369 | month = "October", | 
| 370 | note  = "available from http://www.openmp.org/", | 
| 371 | } | 
| 372 |  | 
| 373 | @Manual{PC++, | 
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| 375 | title =        "User Guide for a Portable Parallel C++ Programming Systems | 
| 376 | pC++", | 
| 377 | year =         1994, | 
| 378 | organization = "Department of Computer Science and CICA" | 
| 379 | } | 
| 380 |  | 
| 381 |  | 
| 382 | @Article{Perry96, | 
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| 387 | year     = "1996", | 
| 388 | volume   = 101, | 
| 389 | pages    = "21339-21349", | 
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| 392 |  | 
| 393 | @Book{Pfi97, | 
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| 395 | year =         1995, | 
| 396 | author    =    "G.F.Pfister", | 
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| 398 | } | 
| 399 |  | 
| 400 | @Article{Schmitt89, | 
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| 402 | title =       "{Evaporation minus precipitation and | 
| 403 | density fluxes for the North Atlantic}", | 
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| 406 | volume   = 19, | 
| 407 | pages    = "1208-1221", | 
| 408 | } | 
| 409 |  | 
| 410 | @Manual{SCI, | 
| 411 | title   = "{Standard for Scalable Coherent Interface (SCI) Specification}", | 
| 412 | organization = {IEEE}, | 
| 413 | year = {1993}, | 
| 414 | month = {August}, | 
| 415 | number = "ISBN 1-55937-222-2", | 
| 416 | note  = "IEEE Std. 1596-1992", | 
| 417 | } | 
| 418 |  | 
| 419 | @inproceedings{Seitz94, | 
| 420 | author    =    "C.Seitz", | 
| 421 | title =        "Myrinet - a gigabit per seond local area network", | 
| 422 | year =         1994, | 
| 423 | booktitle =    "{Proceedings of Hot Interconnects}", | 
| 424 | } | 
| 425 |  | 
| 426 | @Manual{shmem, | 
| 427 | author    =    "R.Barriuso and A.Knies", | 
| 428 | title =        "SHMEM Users Guide, Revision 2.0", | 
| 429 | year =         1994, | 
| 430 | month        = "May", | 
| 431 | organization = "Cray Research Inc.", | 
| 432 | } | 
| 433 |  | 
| 434 | @techReport{Stammer98, | 
| 435 | author =      "D.Stammer and C.Wunsch and R.Giering and Q.Zhang and | 
| 436 | J.Marotzke and J.Marshall and C.Hill", | 
| 437 | title =       "{The global ocean circulation estimated from TOPEX/POSEIDON | 
| 438 | altimetry and a general circulation model}", | 
| 439 | year     = "1997", | 
| 440 | institution = "Center for Global Change Science, MIT", | 
| 441 | number = "No. 49", | 
| 442 |  | 
| 443 | } | 
| 444 |  | 
| 445 | @Book{Stommel66, | 
| 446 | key   =        "Stommel66", | 
| 447 | title =        "{The Gulf Stream}", | 
| 448 | publisher =    "University of California Press, Berkeley, Calif.", | 
| 449 | year =         1966, | 
| 450 | author    =    "Stommel,H.", | 
| 451 | edition =      "2nd", | 
| 452 | } | 
| 453 |  | 
| 454 | @Article{Stone72, | 
| 455 | author =      "P.Stone", | 
| 456 | title =       "{A simplified radiative-dynamical model for the static stability | 
| 457 | of rotating atmospheres}", | 
| 458 | journal  = JAS, | 
| 459 | year     = "1972", | 
| 460 | volume   = 29, | 
| 461 | pages    = "405-418", | 
| 462 | } | 
| 463 |  | 
| 464 | @techreport{Suarez95, | 
| 465 | author = "M.Suarez and L.Takacs", | 
| 466 | title  = "Documentation of the ARIES/GEOS Dynamical Core", | 
| 467 | volume = 5, | 
| 468 | year = "1995", | 
| 469 | institution = "NASA", | 
| 470 | number = "Technical Memorandum 104606", | 
| 471 | } | 
| 472 |  | 
| 473 | @inProceedings{threads, | 
| 474 | author =     "F.Muller", | 
| 475 | title =      "{A Library Implementation of POSIX Threads under UNIX}", | 
| 476 | year     = "1993", | 
| 477 | pages    = "29-41", | 
| 478 | booktitle = "Proceeding of the 1993 Winter USENIX CONFERENCE", | 
| 479 | } | 
| 480 |  | 
| 481 | @Article{Tiedtke, | 
| 482 | author =      "M.Tiedtke", | 
| 483 | title =       "{A comprehensive mass flux scheme for cumulus | 
| 484 | parameterization in large-scale models.}", | 
| 485 | journal  = MWR, | 
| 486 | year     = "1989", | 
| 487 | volume   = 117, | 
| 488 | pages    = "1779-1800", | 
| 489 | } | 
| 490 |  | 
| 491 | @Article{Trenberth90, | 
| 492 | author =      "K.E.Trenberth and W.G.Large and J.G.Olson", | 
| 493 | title =       "{The mean annual cycle in global ocean wind stress}", | 
| 494 | journal  = JPO, | 
| 495 | year     = "1990", | 
| 496 | volume   = 20, | 
| 497 | pages    = "1742-1760", | 
| 498 | } | 
| 499 |  | 
| 500 | @Article{Trenberth94, | 
| 501 | author =      "K.E.Trenberth and A.Soloman", | 
| 502 | title =       "{The global heat balance: heat transports in the atmosphere}", | 
| 503 | journal  = "Climate Dynamics", | 
| 504 | year     = "1994", | 
| 505 | volume   = 9, | 
| 506 | pages    = "107-134", | 
| 507 | } | 
| 508 |  | 
| 509 | @inproceedings{Trenberth98, | 
| 510 | author =      "K.E.Trenberth", | 
| 511 | title =       "{The heat budget of the atmosphere and ocean}", | 
| 512 | booktitle = "Proc. First Intl. Conf. on Reanalyses", | 
| 513 | year     = "1997", | 
| 514 | pages    = "27-31", | 
| 515 | publisher = "Silver Spring MD", | 
| 516 | } | 
| 517 |  | 
| 518 | @Manual{VIA1.0, | 
| 519 | title   = "{The Virtual Interface Architecture Specification 1.0}", | 
| 520 | organization = {Intel, Compaq and Microsoft}, | 
| 521 | year = {1997}, | 
| 522 | month = {December}, | 
| 523 | note  = "http://www.viarch.org" | 
| 524 | } | 
| 525 |  | 
| 526 | @Manual{White95, | 
| 527 | title   = "{MIT General Circulation Model: Isomorphisms.}", | 
| 528 | organization = {MIT}, | 
| 529 | year = {1995}, | 
| 530 | note  = "MIT/EAPS Internal Memo" | 
| 531 | } | 
| 532 |  | 
| 533 |  | 
| 534 | @Article{Zhang99, | 
| 535 | author =      "R.Zhang and M.Follows and J.Grotzinger and J.Marshall", | 
| 536 | title =       "{Could the Late Permian Ocean have been Anoxic}", | 
| 537 | journal  = "Science", | 
| 538 | year     = "1999", | 
| 539 | month    = "submitted" | 
| 540 | } |