| 37 | 
 In this experiment the model is configured to represent a mid-latitude  | 
 In this experiment the model is configured to represent a mid-latitude  | 
| 38 | 
 enclosed sector of fluid on a sphere, $60^{\circ} \times 60^{\circ}$ in  | 
 enclosed sector of fluid on a sphere, $60^{\circ} \times 60^{\circ}$ in  | 
| 39 | 
 lateral extent. The fluid is $2$~km deep and is forced | 
 lateral extent. The fluid is $2$~km deep and is forced | 
| 40 | 
 by a constant in time zonal wind stress, $\tau_x$, that varies sinusoidally | 
 by a constant in time zonal wind stress, $\tau_{\lambda}$, that varies  | 
| 41 | 
 in the north-south direction. Topologically the simulated  | 
 sinusoidally in the north-south direction. Topologically the simulated  | 
| 42 | 
 domain is a sector on a sphere and the coriolis parameter, $f$, is defined  | 
 domain is a sector on a sphere and the coriolis parameter, $f$, is defined  | 
| 43 | 
 according to latitude, $\varphi$ | 
 according to latitude, $\varphi$ | 
| 44 | 
  | 
  | 
| 54 | 
  | 
  | 
| 55 | 
 \begin{equation} | 
 \begin{equation} | 
| 56 | 
 \label{EQ:taux} | 
 \label{EQ:taux} | 
| 57 | 
 \tau_x(\varphi) = \tau_{0}\sin(\pi \frac{\varphi}{L_{\varphi}}) | 
 \tau_{\lambda}(\varphi) = \tau_{0}\sin(\pi \frac{\varphi}{L_{\varphi}}) | 
| 58 | 
 \end{equation} | 
 \end{equation} | 
| 59 | 
   | 
   | 
| 60 | 
 \noindent where $L_{\varphi}$ is the lateral domain extent ($60^{\circ}$) and  | 
 \noindent where $L_{\varphi}$ is the lateral domain extent ($60^{\circ}$) and  | 
| 64 | 
 Figure \ref{FIG:simulation_config} | 
 Figure \ref{FIG:simulation_config} | 
| 65 | 
 summarises the configuration simulated. | 
 summarises the configuration simulated. | 
| 66 | 
 In contrast to the example in section \ref{sec:eg-baro}, the  | 
 In contrast to the example in section \ref{sec:eg-baro}, the  | 
| 67 | 
 current experiment simulates a spherical polar domain. However, as indicated | 
 current experiment simulates a spherical polar domain. As indicated | 
| 68 | 
 by the axes in the lower left of the figure the model code works internally | 
 by the axes in the lower left of the figure the model code works internally | 
| 69 | 
 in a locally orthoganal coordinate $(x,y,z)$. For this experiment description  | 
 in a locally orthoganal coordinate $(x,y,z)$. For this experiment description  | 
| 70 | 
 of this document the local orthogonal model coordinate $(x,y,z)$ is synonomous  | 
 of this document the local orthogonal model coordinate $(x,y,z)$ is synonomous  | 
| 95 | 
  | 
  | 
| 96 | 
 \noindent with $\rho_{0}=999.8\,{\rm kg\,m}^{-3}$ and  | 
 \noindent with $\rho_{0}=999.8\,{\rm kg\,m}^{-3}$ and  | 
| 97 | 
 $\alpha_{\theta}=2\times10^{-4}\,{\rm degrees}^{-1} $. Integrated forward in | 
 $\alpha_{\theta}=2\times10^{-4}\,{\rm degrees}^{-1} $. Integrated forward in | 
| 98 | 
 this configuration the model state variable {\bf theta} is synonomous with | 
 this configuration the model state variable {\bf theta} is equivalent to | 
| 99 | 
 either in-situ temperature, $T$, or potential temperature, $\theta$. For  | 
 either in-situ temperature, $T$, or potential temperature, $\theta$. For  | 
| 100 | 
 consistency with later examples, in which the equation of state is | 
 consistency with later examples, in which the equation of state is | 
| 101 | 
 non-linear, we use $\theta$ to represent temperature here. This is | 
 non-linear, we use $\theta$ to represent temperature here. This is | 
| 110 | 
 \caption{Schematic of simulation domain and wind-stress forcing function  | 
 \caption{Schematic of simulation domain and wind-stress forcing function  | 
| 111 | 
 for the four-layer gyre numerical experiment. The domain is enclosed by solid | 
 for the four-layer gyre numerical experiment. The domain is enclosed by solid | 
| 112 | 
 walls at $0^{\circ}$~E, $60^{\circ}$~E, $0^{\circ}$~N and $60^{\circ}$~N. | 
 walls at $0^{\circ}$~E, $60^{\circ}$~E, $0^{\circ}$~N and $60^{\circ}$~N. | 
| 113 | 
 In the four-layer case an initial temperature stratification is  | 
 An initial stratification is  | 
| 114 | 
 imposed by setting the potential temperature, $\theta$, in each layer. | 
 imposed by setting the potential temperature, $\theta$, in each layer. | 
| 115 | 
 The vertical spacing, $\Delta z$, is constant and equal to $500$m. | 
 The vertical spacing, $\Delta z$, is constant and equal to $500$m. | 
| 116 | 
 } | 
 } | 
| 119 | 
  | 
  | 
| 120 | 
 \subsection{Equations solved} | 
 \subsection{Equations solved} | 
| 121 | 
  | 
  | 
| 122 | 
 The implicit free surface form of the  | 
 The implicit free surface {\bf HPE} form of the  | 
| 123 | 
 pressure equation described in Marshall et. al \cite{Marshall97a} is  | 
 equations described in Marshall et. al \cite{Marshall97a} is  | 
| 124 | 
 employed.  | 
 employed. The flow is three-dimensional with just temperature, $\theta$, as  | 
| 125 | 
  | 
 an active tracer.  The equation of state is linear. | 
| 126 | 
 A horizontal laplacian operator $\nabla_{h}^2$ provides viscous | 
 A horizontal laplacian operator $\nabla_{h}^2$ provides viscous | 
| 127 | 
 dissipation. The wind-stress momentum input is added to the momentum equation | 
 dissipation and provides a diffusive sub-grid scale closure for the  | 
| 128 | 
 for the ``zonal flow'', $u$. Other terms in the model | 
 temperature equation. A wind-stress momentum forcing is added to the momentum  | 
| 129 | 
  | 
 equation for the zonal flow, $u$. Other terms in the model | 
| 130 | 
 are explicitly switched off for this experiement configuration (see section | 
 are explicitly switched off for this experiement configuration (see section | 
| 131 | 
 \ref{SEC:code_config} ). This yields an active set of equations in  | 
 \ref{SEC:eg_fourl_code_config} ). This yields an active set of equations | 
| 132 | 
 solved in this configuration, written in spherical polar coordinates as  | 
 solved in this configuration, written in spherical polar coordinates as  | 
| 133 | 
 follows | 
 follows | 
| 134 | 
  | 
  | 
| 135 | 
 \begin{eqnarray} | 
 \begin{eqnarray} | 
| 136 | 
 \label{EQ:model_equations} | 
 \label{EQ:model_equations} | 
| 137 | 
 \frac{Du}{Dt} - fv +  | 
 \frac{Du}{Dt} - fv +  | 
| 138 | 
   \frac{1}{\rho}\frac{\partial p^{'}}{\partial \lambda} -  | 
   \frac{1}{\rho}\frac{\partial p^{\prime}}{\partial \lambda} -  | 
| 139 | 
   A_{h}\nabla_{h}^2u - A_{z}\frac{\partial^{2}u}{\partial z^{2}}  | 
   A_{h}\nabla_{h}^2u - A_{z}\frac{\partial^{2}u}{\partial z^{2}}  | 
| 140 | 
 & = & | 
 & = & | 
| 141 | 
 \cal{F} | 
 \cal{F}_{\lambda} | 
| 142 | 
 \\ | 
 \\ | 
| 143 | 
 \frac{Dv}{Dt} + fu +  | 
 \frac{Dv}{Dt} + fu +  | 
| 144 | 
   \frac{1}{\rho}\frac{\partial p^{'}}{\partial \varphi} -  | 
   \frac{1}{\rho}\frac{\partial p^{\prime}}{\partial \varphi} -  | 
| 145 | 
   A_{h}\nabla_{h}^2v - A_{z}\frac{\partial^{2}v}{\partial z^{2}}  | 
   A_{h}\nabla_{h}^2v - A_{z}\frac{\partial^{2}v}{\partial z^{2}}  | 
| 146 | 
 & = & | 
 & = & | 
| 147 | 
 0 | 
 0 | 
| 148 | 
 \\ | 
 \\ | 
| 149 | 
 \frac{\partial \eta}{\partial t} + \frac{\partial H \hat{u}}{\partial \lambda} + | 
 \frac{\partial \eta}{\partial t} + \frac{\partial H \widehat{u}}{\partial \lambda} + | 
| 150 | 
 \frac{\partial H \hat{v}}{\partial \varphi} | 
 \frac{\partial H \widehat{v}}{\partial \varphi} | 
| 151 | 
 &=& | 
 &=& | 
| 152 | 
 0 | 
 0 | 
| 153 | 
  | 
 \label{eq:fourl_example_continuity} | 
| 154 | 
 \\ | 
 \\ | 
| 155 | 
 \frac{D\theta}{Dt} - | 
 \frac{D\theta}{Dt} - | 
| 156 | 
  K_{h}\nabla_{h}^2\theta  - K_{z}\frac{\partial^{2}\theta}{\partial z^{2}}  | 
  K_{h}\nabla_{h}^2\theta  - K_{z}\frac{\partial^{2}\theta}{\partial z^{2}}  | 
| 157 | 
 & = & | 
 & = & | 
| 158 | 
 0 | 
 0 | 
| 159 | 
  | 
 \label{eq:eg_fourl_theta} | 
| 160 | 
 \\ | 
 \\ | 
| 161 | 
 p^{'} & = & | 
 p^{\prime} & = & | 
| 162 | 
 g\rho_{0} \eta + \int^{0}_{-z}\rho^{'} dz | 
 g\rho_{0} \eta + \int^{0}_{-z}\rho^{\prime} dz | 
| 163 | 
 \\ | 
 \\ | 
| 164 | 
 \rho^{'} & = &- \alpha_{\theta}\rho_{0}\theta^{'} | 
 \rho^{\prime} & = &- \alpha_{\theta}\rho_{0}\theta^{\prime} | 
| 165 | 
 \\ | 
 \\ | 
| 166 | 
 {\cal F} |_{s} & = & \frac{\tau_{x}}{\rho_{0}\Delta z_{s}} | 
 {\cal F}_{\lambda} |_{s} & = & \frac{\tau_{\lambda}}{\rho_{0}\Delta z_{s}} | 
| 167 | 
 \\ | 
 \\ | 
| 168 | 
 {\cal F} |_{i} & = & 0 | 
 {\cal F}_{\lambda} |_{i} & = & 0 | 
| 169 | 
 \end{eqnarray} | 
 \end{eqnarray} | 
| 170 | 
  | 
  | 
| 171 | 
 \noindent where $u$ and $v$ are the components of the horizontal | 
 \noindent where $u$ and $v$ are the components of the horizontal | 
| 172 | 
 flow vector $\vec{u}$ on the sphere ($u=\dot{\lambda},v=\dot{\varphi}$). | 
 flow vector $\vec{u}$ on the sphere ($u=\dot{\lambda},v=\dot{\varphi}$). | 
| 173 | 
 The suffices ${s},{i}$ indicate surface and interior of the domain. | 
 The terms $H\widehat{u}$ and $H\widehat{v}$ are the components of the vertical | 
| 174 | 
 The forcing $\cal F$ is only applied at the surface. | 
 integral term given in equation \ref{eq:free-surface} and | 
| 175 | 
 The pressure field $p^{'}$ is separated into a barotropic part | 
 explained in more detail in section \ref{sect:pressure-method-linear-backward}. | 
| 176 | 
  | 
 However, for the problem presented here, the continuity relation (equation | 
| 177 | 
  | 
 \ref{eq:fourl_example_continuity}) differs from the general form given | 
| 178 | 
  | 
 in section \ref{sect:pressure-method-linear-backward}, | 
| 179 | 
  | 
 equation \ref{eq:linear-free-surface=P-E+R}, because the source terms | 
| 180 | 
  | 
 ${\cal P}-{\cal E}+{\cal R}$  | 
| 181 | 
  | 
 are all $0$. | 
| 182 | 
  | 
  | 
| 183 | 
  | 
 The pressure field, $p^{\prime}$, is separated into a barotropic part | 
| 184 | 
 due to variations in sea-surface height, $\eta$, and a hydrostatic | 
 due to variations in sea-surface height, $\eta$, and a hydrostatic | 
| 185 | 
 part due to variations in density, $\rho^{'}$, over the water column. | 
 part due to variations in density, $\rho^{\prime}$, integrated | 
| 186 | 
  | 
 through the water column. | 
| 187 | 
  | 
  | 
| 188 | 
  | 
 The suffices ${s},{i}$ indicate surface and interior of the domain. | 
| 189 | 
  | 
 The windstress forcing, ${\cal F}_{\lambda}$, is applied in the surface layer  | 
| 190 | 
  | 
 by a source term in the zonal momentum equation. In the ocean interior | 
| 191 | 
  | 
 this term is zero. | 
| 192 | 
  | 
  | 
| 193 | 
  | 
 In the momentum equations | 
| 194 | 
  | 
 lateral and vertical boundary conditions for the $\nabla_{h}^{2}$ | 
| 195 | 
  | 
 and $\frac{\partial^{2}}{\partial z^{2}}$ operators are specified | 
| 196 | 
  | 
 when the numerical simulation is run - see section  | 
| 197 | 
  | 
 \ref{SEC:eg_fourl_code_config}. For temperature | 
| 198 | 
  | 
 the boundary condition is ``zero-flux''  | 
| 199 | 
  | 
 e.g. $\frac{\partial \theta}{\partial \varphi}= | 
| 200 | 
  | 
 \frac{\partial \theta}{\partial \lambda}=\frac{\partial \theta}{\partial z}=0$. | 
| 201 | 
  | 
  | 
| 202 | 
  | 
  | 
| 203 | 
  | 
  | 
| 204 | 
 \subsection{Discrete Numerical Configuration} | 
 \subsection{Discrete Numerical Configuration} | 
| 205 | 
  | 
  | 
| 206 | 
  The model is configured in hydrostatic form.  The domain is discretised with  | 
  The domain is discretised with  | 
| 207 | 
 a uniform grid spacing in latitude and longitude | 
 a uniform grid spacing in latitude and longitude | 
| 208 | 
  $\Delta \lambda=\Delta \varphi=1^{\circ}$, so  | 
  $\Delta \lambda=\Delta \varphi=1^{\circ}$, so  | 
| 209 | 
 that there are sixty grid cells in the zonal and meridional directions.  | 
 that there are sixty grid cells in the zonal and meridional directions.  | 
| 210 | 
 Vertically the  | 
 Vertically the  | 
| 211 | 
 model is configured with a four layers with constant depth,  | 
 model is configured with four layers with constant depth,  | 
| 212 | 
 $\Delta z$, of $500$~m. The internal, locally orthogonal, model coordinate  | 
 $\Delta z$, of $500$~m. The internal, locally orthogonal, model coordinate  | 
| 213 | 
 variables $x$ and $y$ are initialised from the values of | 
 variables $x$ and $y$ are initialised from the values of | 
| 214 | 
 $\lambda$, $\varphi$, $\Delta \lambda$ and $\Delta \varphi$ in | 
 $\lambda$, $\varphi$, $\Delta \lambda$ and $\Delta \varphi$ in | 
| 244 | 
  | 
  | 
| 245 | 
 As described in \ref{sec:tracer_equations}, the time evolution of potential  | 
 As described in \ref{sec:tracer_equations}, the time evolution of potential  | 
| 246 | 
 temperature,  | 
 temperature,  | 
| 247 | 
 $\theta$, equation is solved prognostically. | 
 $\theta$, (equation \ref{eq:eg_fourl_theta}) | 
| 248 | 
 The pressure forces that drive the fluid motions, ( | 
 is evaluated prognostically. The centered second-order scheme with | 
| 249 | 
  | 
 Adams-Bashforth time stepping described in section  | 
| 250 | 
  | 
 \ref{sec:tracer_equations_abII} is used to step forward the temperature  | 
| 251 | 
  | 
 equation. The pressure forces that drive the fluid motions, ( | 
| 252 | 
 $\frac{\partial p^{'}}{\partial \lambda}$ and $\frac{\partial p^{'}}{\partial \varphi}$), are found by summing pressure due to surface  | 
 $\frac{\partial p^{'}}{\partial \lambda}$ and $\frac{\partial p^{'}}{\partial \varphi}$), are found by summing pressure due to surface  | 
| 253 | 
 elevation $\eta$ and the hydrostatic pressure. | 
 elevation $\eta$ and the hydrostatic pressure. The hydrostatic part of the  | 
| 254 | 
  | 
 pressure is evaluated explicitly by integrating density. The sea-surface | 
| 255 | 
  | 
 height, $\eta$, is solved for implicitly as described in section  | 
| 256 | 
  | 
 \ref{sect:pressure-method-linear-backward}. | 
| 257 | 
  | 
  | 
| 258 | 
 \subsubsection{Numerical Stability Criteria} | 
 \subsubsection{Numerical Stability Criteria} | 
| 259 | 
  | 
  | 
| 268 | 
 \noindent  of $\approx 100$km. This is greater than the model | 
 \noindent  of $\approx 100$km. This is greater than the model | 
| 269 | 
 resolution in mid-latitudes $\Delta x$, ensuring that the frictional  | 
 resolution in mid-latitudes $\Delta x$, ensuring that the frictional  | 
| 270 | 
 boundary layer is well resolved. | 
 boundary layer is well resolved. | 
| 271 | 
  | 
  | 
| 272 | 
 \\ | 
 \\ | 
| 273 | 
  | 
  | 
| 274 | 
 \noindent The model is stepped forward with a  | 
 \noindent The model is stepped forward with a  | 
| 335 | 
 stability limit of 0.25. | 
 stability limit of 0.25. | 
| 336 | 
    | 
    | 
| 337 | 
 \subsection{Code Configuration} | 
 \subsection{Code Configuration} | 
| 338 | 
 \label{SEC:code_config} | 
 \label{SEC:eg_fourl_code_config} | 
| 339 | 
  | 
  | 
| 340 | 
 The model configuration for this experiment resides under the  | 
 The model configuration for this experiment resides under the  | 
| 341 | 
 directory {\it verification/exp1/}.  The experiment files  | 
 directory {\it verification/exp1/}.  The experiment files  |