--- manual/s_algorithm/text/tracer.tex	2001/11/13 15:32:28	1.9
+++ manual/s_algorithm/text/tracer.tex	2001/11/13 20:13:54	1.12
@@ -1,8 +1,8 @@
-% $Header: /home/ubuntu/mnt/e9_copy/manual/s_algorithm/text/tracer.tex,v 1.9 2001/11/13 15:32:28 adcroft Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/manual/s_algorithm/text/tracer.tex,v 1.12 2001/11/13 20:13:54 adcroft Exp $
 % $Name:  $
 
 \section{Tracer equations}
-\label{sec:tracer_equations}
+\label{sect:tracer_equations}
 
 The basic discretization used for the tracer equations is the second
 order piece-wise constant finite volume form of the forced
@@ -15,7 +15,7 @@
 described here.
 
 \subsection{Time-stepping of tracers: ABII}
-\label{sec:tracer_equations_abII}
+\label{sect:tracer_equations_abII}
 
 The default advection scheme is the centered second order method which
 requires a second order or quasi-second order time-stepping scheme to
@@ -43,7 +43,7 @@
 everywhere else. This term is therefore referred to as the surface
 correction term. Global conservation is not possible using the
 flux-form (as here) and a linearized free-surface
-(\cite{Griffies00,Campin02}).
+(\cite{griffies:00,campin:02}).
 
 The continuity equation can be recovered by setting
 $G_{diff}=G_{forc}=0$ and $\tau=1$.
@@ -123,6 +123,7 @@
 
 
 \section{Linear advection schemes}
+\label{sect:tracer-advection}
 
 \begin{figure}
 \resizebox{5.5in}{!}{\includegraphics{part2/advect-1d-lo.eps}}
@@ -200,7 +201,7 @@
 
 For non-divergent flow, this discretization can be shown to conserve
 the tracer both locally and globally and to globally conserve tracer
-variance, $\tau^2$. The proof is given in \cite{Adcroft95,Adcroft97}.
+variance, $\tau^2$. The proof is given in \cite{adcroft:95,adcroft:97}.
 
 \fbox{ \begin{minipage}{4.75in}
 {\em S/R GAD\_C2\_ADV\_X} ({\em gad\_c2\_adv\_x.F})
@@ -387,7 +388,7 @@
 r = \frac{ \tau_{i+1} - \tau_{i} }{ \tau_{i} - \tau_{i-1} } & \forall & u < 0
 \end{eqnarray}
 as it's argument. There are many choices of limiter function but we
-only provide the Superbee limiter \cite{Roe85}:
+only provide the Superbee limiter \cite{roe:85}:
 \begin{equation}
 \psi(r) = \max[0,\min[1,2r],\min[2,r]]
 \end{equation}