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| 3 |  | 
| 4 | \chapter{Model Uses} | 
| 5 | \begin{rawhtml} | 
| 6 | <!-- CMIREDIR:model_uses_list: --> | 
| 7 | \end{rawhtml} | 
| 8 |  | 
| 9 |  | 
| 10 |  | 
| 11 | To date, the MITgcm model has been used for number of purposes.  The | 
| 12 | following papers are an incomplete yet fairly broad sample of MITgcm | 
| 13 | applications: | 
| 14 |  | 
| 15 | \begin{itemize} | 
| 16 |  | 
| 17 | \item R.S. Gross and I. Fukumori and D. Menemenlis (2003). | 
| 18 | Atmospheric and oceanic excitation of the Earth's wobbles during 1980-2000. | 
| 19 | {\it Journal of Geophysical Research-Solid Earth}, vol.108. | 
| 20 |  | 
| 21 | \item M.A. Spall and R.S. Pickart (2003). | 
| 22 | Wind-driven recirculations and exchange in the Labrador and Irminger Seas. | 
| 23 | {\it Journal of Physical Oceanography}, vol.33, pp.1829--1845. | 
| 24 |  | 
| 25 | \item B. Ferron and J. Marotzke (2003). | 
| 26 | Impact of 4D-variational assimilation of WOCE hydrography on the | 
| 27 | meridional circulation of the Indian Ocean. {\it Deep-Sea Research Part | 
| 28 | II-Topical Studies in Oceanography}, vol.50, pp.2005--2021. | 
| 29 |  | 
| 30 | \item G.A. McKinley and M.J. Follows and J. Marshall and S.M. Fan (2003). | 
| 31 | Interannual variability of air-sea O-2 fluxes and the determination of | 
| 32 | CO2 sinks using atmospheric O-2/N-2. {\it Geophysical Research Letters}, | 
| 33 | vol.30. | 
| 34 |  | 
| 35 | \item B.Y. Huang and P.H. Stone and A.P. Sokolov and I.V. Kamenkovich | 
| 36 | (2003). The deep-ocean heat uptake in transient climate change. {\it Journal | 
| 37 | of Climate}, vol.16, pp.1352--1363. | 
| 38 |  | 
| 39 | \item G. de Coetlogon and C. Frankignoul (2003). The persistence of winter | 
| 40 | sea surface temperature in the North Atlantic. {\it Journal of Climate}, | 
| 41 | vol.16, pp.1364--1377. | 
| 42 |  | 
| 43 | \item K.H. Nisancioglu and M.E. Raymo and P.H. Stone (2003). | 
| 44 | Reorganization of Miocene deep water circulation in response to the | 
| 45 | shoaling of the Central American Seaway. {\it Paleoceanography}, vol.18. | 
| 46 |  | 
| 47 | \item T. Radko and J. Marshall (2003). Equilibration of a Warm Pumped Lens | 
| 48 | on a beta plane. {\it Journal of Physical Oceanography}, vol.33, pp.885--899. | 
| 49 |  | 
| 50 | \item T. Stipa (2002). The dynamics of the N/P ratio and stratification in | 
| 51 | a large nitrogen-limited estuary as a result of upwelling: a tendency | 
| 52 | for offshore Nodularia blooms. {\it Hydrobiologia}, vol.487, pp.219--227. | 
| 53 |  | 
| 54 | \item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. | 
| 55 | Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall | 
| 56 | (2003). Volume, heat, and freshwater transports of the global ocean | 
| 57 | circulation 1993-2000, estimated from a general circulation model | 
| 58 | constrained by World Ocean Circulation Experiment (WOCE) data. {\it Journal | 
| 59 | of Geophysical Research-Oceans}, vol.108. | 
| 60 |  | 
| 61 | \item P. Heimbach and C. Hill and R. Giering (2002). Automatic generation | 
| 62 | of efficient adjoint code for a parallel Navier-Stokes solver. | 
| 63 | {\it Computational Science-ICCS 2002, PT II, Proceedings}, vol.2330, | 
| 64 | pp.1019--1028. | 
| 65 |  | 
| 66 | \item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. | 
| 67 | Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall | 
| 68 | (2002). Global ocean circulation during 1992-1997, estimated from ocean | 
| 69 | observations and a general circulation model. {\it Journal of Geophysical | 
| 70 | Research-Oceans}, vol.107. | 
| 71 |  | 
| 72 | \item M. Solovev and P.H. Stone and P. Malanotte-Rizzoli (2002). | 
| 73 | Assessment of mesoscale eddy parameterizations for a single-basin | 
| 74 | coarse-resolution ocean model. {\it Journal of Geophysical Research-Oceans}, | 
| 75 | vol.107. | 
| 76 |  | 
| 77 | \item C. Herbaut and J. Sirven and S. Fevrier (2002). Response of a | 
| 78 | simplified oceanic general circulation model to idealized NAO-like | 
| 79 | stochastic forcing. {\it Journal of Physical Oceanography}, vol.32, | 
| 80 | pp.3182--3192. | 
| 81 |  | 
| 82 | \item C. Wunsch (2002). Oceanic age and transient tracers: Analytical and | 
| 83 | numerical solutions. {\it Journal of Geophysical Research-Oceans}, vol.107. | 
| 84 |  | 
| 85 | \item J. Sirven and C. Frankignoul and D. de Coetlogon and V. Taillandier | 
| 86 | (2002). Spectrum of wind-driven baroclinic fluctuations of the ocean in | 
| 87 | the midlatitudes. {\it Journal of Physical Oceanography}, vol.32, | 
| 88 | pp.2405--2417. | 
| 89 |  | 
| 90 | \item R. Zhang and M. Follows and J. Marshall (2002). Mechanisms of | 
| 91 | thermohaline mode switching with application to warm equable climates. | 
| 92 | {\it Journal of Climate}, vol.15, pp.2056--2072. | 
| 93 |  | 
| 94 | \item G. Brostrom (2002). On advection and diffusion of plankton in coarse | 
| 95 | resolution ocean models. {\it Journal of Marine Systems}, vol.35, pp.99--110. | 
| 96 |  | 
| 97 | \item T. Lee and I. Fukumori and D. Menemenlis and Z.F. Xing and L.L. Fu | 
| 98 | (2002). Effects of the Indonesian Throughflow on the Pacific and Indian | 
| 99 | oceans. {\it Journal of Physical Oceanography}, vol.32, pp.1404--1429. | 
| 100 |  | 
| 101 |  | 
| 102 | \item C. Herbaut and J. Marshall (2002). Mechanisms of buoyancy transport | 
| 103 | through mixed layers and statistical signatures from isobaric floats. | 
| 104 | {\it Journal of Physical Oceanography}, vol.32, pp.545--557. | 
| 105 |  | 
| 106 | \item J. Marshall and H. Jones and R. Karsten and R. Wardle (2002). Can | 
| 107 | eddies set ocean stratification?, {\it Journal of Physical Oceanography}, | 
| 108 | vol.32, pp.26--38. | 
| 109 |  | 
| 110 | \item C. Herbaut and J. Sirven and A. Czaja (2001). An idealized model | 
| 111 | study of the mass and heat transports between the subpolar and | 
| 112 | subtropical gyres. {\it Journal of Physical Oceanography}, vol.31, | 
| 113 | pp.2903--2916. | 
| 114 |  | 
| 115 | \item R.H. Kase and A. Biastoch and D.B. Stammer (2001). On the Mid-Depth | 
| 116 | Circulation in the Labrador and Irminger Seas. {\it Geophysical Research | 
| 117 | Letters}, vol.28, pp.3433--3436. | 
| 118 |  | 
| 119 | \item R. Zhang and M.J. Follows and J.P. Grotzinger and J. Marshall | 
| 120 | (2001). Could the Late Permian deep ocean have been anoxic?. | 
| 121 | {\it Paleoceanography}, vol.16, pp.317--329. | 
| 122 |  | 
| 123 | \item A. Adcroft and J.R. Scott and J. Marotzke (2001). Impact of | 
| 124 | geothermal heating on the global ocean circulation. {\it Geophysical Research | 
| 125 | Letters}, vol.28, pp.1735--1738. | 
| 126 |  | 
| 127 | \item J. Marshall and D. Jamous and J. Nilsson (2001). Entry, flux, and | 
| 128 | exit of potential vorticity in ocean circulation. {\it Journal of Physical | 
| 129 | Oceanography}, vol.31, pp.777--789. | 
| 130 |  | 
| 131 | \item A. Mahadevan (2001). An analysis of bomb radiocarbon trends in the | 
| 132 | Pacific. {\it Marine Chemistry}, vol.73, pp.273--290. | 
| 133 |  | 
| 134 |  | 
| 135 | \item G. Brostrom (2000). The role of the annual cycles for the air-sea | 
| 136 | exchange of CO2. {\it Marine Chemistry}, vol.72, pp.151--169. | 
| 137 |  | 
| 138 | \item Y.H. Zhou and H.Q. Wu and N.H. Yu and D.W. Zheng (2000). Excitation | 
| 139 | of seasonal polar motion by atmospheric and oceanic angular momentums. | 
| 140 | {\it Progress in Natural Science}, vol.10, pp.931--936. | 
| 141 |  | 
| 142 | \item R. Wardle and J. Marshall (2000). Representation of eddies in | 
| 143 | primitive equation models by a PV flux. {\it Journal of Physical | 
| 144 | Oceanography}, vol.30, pp.2481--2503. | 
| 145 |  | 
| 146 | \item P.S. Polito and O.T. Sato and W.T. Liu (2000). Characterization and | 
| 147 | validation of the heat storage variability from TOPEX/Poseidon at four | 
| 148 | oceanographic sites. {\it Journal of Geophysical Research-Oceans}, vol.105, | 
| 149 | pp.16911--16921. | 
| 150 |  | 
| 151 | \item R.M. Ponte and D. Stammer (2000). Global and regional axial ocean | 
| 152 | angular momentum signals and length-of-day variations (1985-1996). | 
| 153 | {\it Journal of Geophysical Research-Oceans}, vol.105, pp.17161--17171. | 
| 154 |  | 
| 155 | \item J. Wunsch (2000). Oceanic influence on the annual polar motion. | 
| 156 | {\it Journal of GEODYNAMICS}, vol.30, pp.389--399. | 
| 157 |  | 
| 158 | \item D. Menemenlis and M. Chechelnitsky (2000). Error estimates for an | 
| 159 | ocean general circulation model from altimeter and acoustic tomography | 
| 160 | data. {\it Monthly Weather Review}, vol.128, pp.763--778. | 
| 161 |  | 
| 162 | \item Y.H. Zhou and D.W. Zheng and N.H. Yu and H.Q. Wu (2000). Excitation | 
| 163 | of annual polar motion by atmosphere and ocean. {\it Chinese Science | 
| 164 | Bulletin}, vol.45, pp.139--142. | 
| 165 |  | 
| 166 | \item J. Marotzke and R. Giering and K.Q. Zhang and D. Stammer and C. Hill | 
| 167 | and T. Lee (1999). Construction of the adjoint MIT ocean general | 
| 168 | circulation model and application to Atlantic heat transport | 
| 169 | sensitivity. {\it Journal of Geophysical Research-Oceans}, vol.104, | 
| 170 | pp.29529--29547. | 
| 171 |  | 
| 172 | \item R.M. Ponte and D. Stammer (1999). Role of ocean currents and bottom | 
| 173 | pressure variability on seasonal polar motion. {\it Journal of Geophysical | 
| 174 | Research-Oceans}, vol.104, pp.23393--23409. | 
| 175 |  | 
| 176 | \item J. Nastula and R.M. Ponte (1999). Further evidence for oceanic | 
| 177 | excitation of polar motion. {\it Geophysical Journal International}, vol.139, | 
| 178 | pp.123--130. | 
| 179 |  | 
| 180 | \item K.Q. Zhang and J. Marotzke (1999). The importance of open-boundary | 
| 181 | estimation for an Indian Ocean GCM-data synthesis. {\it Journal of Marine | 
| 182 | Research}, vol.57, pp.305--334. | 
| 183 |  | 
| 184 | \item J. Marshall and D. Jamous and J. Nilsson (1999). Reconciling | 
| 185 | thermodynamic and dynamic methods of computation of water-mass | 
| 186 | transformation rates. {\it Deep-Sea Research PART I-Oceanographic Research | 
| 187 | Papers}, vol.46, pp.545--572. | 
| 188 |  | 
| 189 | \item J. Marshall and F. Schott (1999). Open-ocean convection: | 
| 190 | Observations, theory, and models. {\it Reviews of Geophysics}, vol.37, | 
| 191 | pp.1--64. | 
| 192 |  | 
| 193 | \item J. Marshall and H. Jones and C. Hill (1998). Efficient ocean | 
| 194 | modeling using non-hydrostatic algorithms. {\it Journal of Marine Systems}, | 
| 195 | vol.18, pp.115--134. | 
| 196 |  | 
| 197 | \item A.B. Baggeroer and T.G. Birdsall and C. Clark and J.A. Colosi and | 
| 198 | B.D. Cornuelle and D. Costa and B.D. Dushaw and M. Dzieciuch and A.M.G. | 
| 199 | Forbes and C. Hill and B.M. Howe and J. Marshall and D. Menemenlis and | 
| 200 | J.A. Mercer and K. Metzger and W. Munk and R.C. Spindel and D. Stammer | 
| 201 | and P.F. Worcester and C. Wunsch (1998). Ocean climate change: | 
| 202 | Comparison of acoustic tomography, satellite altimetry, and modeling. | 
| 203 | {\it Science}, vol.281, pp.1327--1332. | 
| 204 |  | 
| 205 | \item C. Wunsch and D. Stammer (1998). Satellite altimetry, the marine | 
| 206 | geoid, and the oceanic general circulation. {\it Annual Review of Earth and | 
| 207 | Planetary Sciences}, vol.26, pp.219--253. | 
| 208 |  | 
| 209 | \item A. Shaw and Arvind and K.C. Cho and C. Hill and R.P. Johnson and J. | 
| 210 | Marshall (1998). A comparison of implicitly parallel multithreaded and | 
| 211 | data-parallel implementations of an ocean model. {\it Journal of Parallel and | 
| 212 | Distributed Computing}, vol.48, pp.1--51. | 
| 213 |  | 
| 214 | \item T.W.N. Haine and J. Marshall (1998). Gravitational, symmetric, and | 
| 215 | baroclinic instability of the ocean mixed layer. {\it Journal of Physical | 
| 216 | Oceanography}, vol.28, pp.634--658. | 
| 217 |  | 
| 218 | \item R.M. Ponte and D. Stammer and J. Marshall (1998). Oceanic signals in | 
| 219 | observed motions of the Earth's pole of rotation. {\it Nature}, vol.391, | 
| 220 | pp.476--479. | 
| 221 |  | 
| 222 | \item D. Menemenlis and C. Wunsch (1997). Linearization of an oceanic | 
| 223 | general circulation model for data assimilation and climate studies. | 
| 224 | {\it Journal of Atmospheric and Oceanic Technology}, vol.14, pp.1420--1443. | 
| 225 |  | 
| 226 | \item H. Jones and J. Marshall (1997). Restratification after deep | 
| 227 | convection. {\it Journal of Physical Oceanography}, vol.27, pp.2276--2287. | 
| 228 |  | 
| 229 | \item S.R. Jayne and R. Tokmakian (1997). Forcing and sampling of ocean | 
| 230 | general circulation models: Impact of high-frequency motions. {\it Journal of | 
| 231 | Physical Oceanography}, vol.27, pp.1173--1179. | 
| 232 |  | 
| 233 | \end{itemize} |