MITgcm/manual/model_uses.tex

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\chapter{Model Uses}
\begin{rawhtml}
<!-- CMIREDIR:model_uses_list -->
\end{rawhtml}


To date, the MITgcm model has been used for number of purposes.  The
following papers are an incomplete yet fairly broad sample of MITgcm
applications:

\begin{itemize}

\item R.S. Gross and I. Fukumori and D. Menemenlis (2003).
Atmospheric and oceanic excitation of the Earth's wobbles during 1980-2000.
{\it Journal of Geophysical Research-Solid Earth}, vol.108.

\item M.A. Spall and R.S. Pickart (2003).
Wind-driven recirculations and exchange in the Labrador and Irminger Seas. 
{\it Journal of Physical Oceanography}, vol.33, pp.1829--1845. 

\item B. Ferron and J. Marotzke (2003).
Impact of 4D-variational assimilation of WOCE hydrography on the
meridional circulation of the Indian Ocean. {\it Deep-Sea Research Part
II-Topical Studies in Oceanography}, vol.50, pp.2005--2021.

\item G.A. McKinley and M.J. Follows and J. Marshall and S.M. Fan (2003).
Interannual variability of air-sea O-2 fluxes and the determination of
CO2 sinks using atmospheric O-2/N-2. {\it Geophysical Research Letters},
vol.30. 

\item B.Y. Huang and P.H. Stone and A.P. Sokolov and I.V. Kamenkovich
(2003). The deep-ocean heat uptake in transient climate change. {\it Journal
of Climate}, vol.16, pp.1352--1363. 

\item G. de Coetlogon and C. Frankignoul (2003). The persistence of winter
sea surface temperature in the North Atlantic. {\it Journal of Climate},
vol.16, pp.1364--1377. 

\item K.H. Nisancioglu and M.E. Raymo and P.H. Stone (2003).
Reorganization of Miocene deep water circulation in response to the
shoaling of the Central American Seaway. {\it Paleoceanography}, vol.18. 

\item T. Radko and J. Marshall (2003). Equilibration of a Warm Pumped Lens
on a beta plane. {\it Journal of Physical Oceanography}, vol.33, pp.885--899. 

\item T. Stipa (2002). The dynamics of the N/P ratio and stratification in
a large nitrogen-limited estuary as a result of upwelling: a tendency
for offshore Nodularia blooms. {\it Hydrobiologia}, vol.487, pp.219--227. 

\item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P.
Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall
(2003). Volume, heat, and freshwater transports of the global ocean
circulation 1993-2000, estimated from a general circulation model
constrained by World Ocean Circulation Experiment (WOCE) data. {\it Journal
of Geophysical Research-Oceans}, vol.108. 

\item P. Heimbach and C. Hill and R. Giering (2002). Automatic generation
of efficient adjoint code for a parallel Navier-Stokes solver.
{\it Computational Science-ICCS 2002, PT II, Proceedings}, vol.2330,
pp.1019--1028. 

\item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P.
Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall
(2002). Global ocean circulation during 1992-1997, estimated from ocean
observations and a general circulation model. {\it Journal of Geophysical
Research-Oceans}, vol.107. 

\item M. Solovev and P.H. Stone and P. Malanotte-Rizzoli (2002).
Assessment of mesoscale eddy parameterizations for a single-basin
coarse-resolution ocean model. {\it Journal of Geophysical Research-Oceans},
vol.107. 

\item C. Herbaut and J. Sirven and S. Fevrier (2002). Response of a
simplified oceanic general circulation model to idealized NAO-like
stochastic forcing. {\it Journal of Physical Oceanography}, vol.32,
pp.3182--3192. 

\item C. Wunsch (2002). Oceanic age and transient tracers: Analytical and
numerical solutions. {\it Journal of Geophysical Research-Oceans}, vol.107. 

\item J. Sirven and C. Frankignoul and D. de Coetlogon and V. Taillandier
(2002). Spectrum of wind-driven baroclinic fluctuations of the ocean in
the midlatitudes. {\it Journal of Physical Oceanography}, vol.32,
pp.2405--2417. 

\item R. Zhang and M. Follows and J. Marshall (2002). Mechanisms of
thermohaline mode switching with application to warm equable climates.
{\it Journal of Climate}, vol.15, pp.2056--2072. 

\item G. Brostrom (2002). On advection and diffusion of plankton in coarse
resolution ocean models. {\it Journal of Marine Systems}, vol.35, pp.99--110. 

\item T. Lee and I. Fukumori and D. Menemenlis and Z.F. Xing and L.L. Fu
(2002). Effects of the Indonesian Throughflow on the Pacific and Indian
oceans. {\it Journal of Physical Oceanography}, vol.32, pp.1404--1429. 


\item C. Herbaut and J. Marshall (2002). Mechanisms of buoyancy transport
through mixed layers and statistical signatures from isobaric floats.
{\it Journal of Physical Oceanography}, vol.32, pp.545--557. 

\item J. Marshall and H. Jones and R. Karsten and R. Wardle (2002). Can
eddies set ocean stratification?, {\it Journal of Physical Oceanography},
vol.32, pp.26--38. 

\item C. Herbaut and J. Sirven and A. Czaja (2001). An idealized model
study of the mass and heat transports between the subpolar and
subtropical gyres. {\it Journal of Physical Oceanography}, vol.31,
pp.2903--2916. 

\item R.H. Kase and A. Biastoch and D.B. Stammer (2001). On the Mid-Depth
Circulation in the Labrador and Irminger Seas. {\it Geophysical Research
Letters}, vol.28, pp.3433--3436. 

\item R. Zhang and M.J. Follows and J.P. Grotzinger and J. Marshall
(2001). Could the Late Permian deep ocean have been anoxic?.
{\it Paleoceanography}, vol.16, pp.317--329. 

\item A. Adcroft and J.R. Scott and J. Marotzke (2001). Impact of
geothermal heating on the global ocean circulation. {\it Geophysical Research
Letters}, vol.28, pp.1735--1738. 

\item J. Marshall and D. Jamous and J. Nilsson (2001). Entry, flux, and
exit of potential vorticity in ocean circulation. {\it Journal of Physical
Oceanography}, vol.31, pp.777--789. 

\item A. Mahadevan (2001). An analysis of bomb radiocarbon trends in the
Pacific. {\it Marine Chemistry}, vol.73, pp.273--290. 


\item G. Brostrom (2000). The role of the annual cycles for the air-sea
exchange of CO2. {\it Marine Chemistry}, vol.72, pp.151--169. 

\item Y.H. Zhou and H.Q. Wu and N.H. Yu and D.W. Zheng (2000). Excitation
of seasonal polar motion by atmospheric and oceanic angular momentums.
{\it Progress in Natural Science}, vol.10, pp.931--936. 

\item R. Wardle and J. Marshall (2000). Representation of eddies in
primitive equation models by a PV flux. {\it Journal of Physical
Oceanography}, vol.30, pp.2481--2503. 

\item P.S. Polito and O.T. Sato and W.T. Liu (2000). Characterization and
validation of the heat storage variability from TOPEX/Poseidon at four
oceanographic sites. {\it Journal of Geophysical Research-Oceans}, vol.105,
pp.16911--16921. 

\item R.M. Ponte and D. Stammer (2000). Global and regional axial ocean
angular momentum signals and length-of-day variations (1985-1996).
{\it Journal of Geophysical Research-Oceans}, vol.105, pp.17161--17171. 

\item J. Wunsch (2000). Oceanic influence on the annual polar motion.
{\it Journal of GEODYNAMICS}, vol.30, pp.389--399. 

\item D. Menemenlis and M. Chechelnitsky (2000). Error estimates for an
ocean general circulation model from altimeter and acoustic tomography
data. {\it Monthly Weather Review}, vol.128, pp.763--778. 

\item Y.H. Zhou and D.W. Zheng and N.H. Yu and H.Q. Wu (2000). Excitation
of annual polar motion by atmosphere and ocean. {\it Chinese Science
Bulletin}, vol.45, pp.139--142. 

\item J. Marotzke and R. Giering and K.Q. Zhang and D. Stammer and C. Hill
and T. Lee (1999). Construction of the adjoint MIT ocean general
circulation model and application to Atlantic heat transport
sensitivity. {\it Journal of Geophysical Research-Oceans}, vol.104,
pp.29529--29547. 

\item R.M. Ponte and D. Stammer (1999). Role of ocean currents and bottom
pressure variability on seasonal polar motion. {\it Journal of Geophysical
Research-Oceans}, vol.104, pp.23393--23409. 

\item J. Nastula and R.M. Ponte (1999). Further evidence for oceanic
excitation of polar motion. {\it Geophysical Journal International}, vol.139,
pp.123--130. 

\item K.Q. Zhang and J. Marotzke (1999). The importance of open-boundary
estimation for an Indian Ocean GCM-data synthesis. {\it Journal of Marine
Research}, vol.57, pp.305--334. 

\item J. Marshall and D. Jamous and J. Nilsson (1999). Reconciling
thermodynamic and dynamic methods of computation of water-mass
transformation rates. {\it Deep-Sea Research PART I-Oceanographic Research
Papers}, vol.46, pp.545--572. 

\item J. Marshall and F. Schott (1999). Open-ocean convection:
Observations, theory, and models. {\it Reviews of Geophysics}, vol.37,
pp.1--64. 

\item J. Marshall and H. Jones and C. Hill (1998). Efficient ocean
modeling using non-hydrostatic algorithms. {\it Journal of Marine Systems},
vol.18, pp.115--134. 

\item A.B. Baggeroer and T.G. Birdsall and C. Clark and J.A. Colosi and
B.D. Cornuelle and D. Costa and B.D. Dushaw and M. Dzieciuch and A.M.G.
Forbes and C. Hill and B.M. Howe and J. Marshall and D. Menemenlis and
J.A. Mercer and K. Metzger and W. Munk and R.C. Spindel and D. Stammer
and P.F. Worcester and C. Wunsch (1998). Ocean climate change:
Comparison of acoustic tomography, satellite altimetry, and modeling.
{\it Science}, vol.281, pp.1327--1332. 

\item C. Wunsch and D. Stammer (1998). Satellite altimetry, the marine
geoid, and the oceanic general circulation. {\it Annual Review of Earth and
Planetary Sciences}, vol.26, pp.219--253. 

\item A. Shaw and Arvind and K.C. Cho and C. Hill and R.P. Johnson and J.
Marshall (1998). A comparison of implicitly parallel multithreaded and
data-parallel implementations of an ocean model. {\it Journal of Parallel and
Distributed Computing}, vol.48, pp.1--51. 

\item T.W.N. Haine and J. Marshall (1998). Gravitational, symmetric, and
baroclinic instability of the ocean mixed layer. {\it Journal of Physical
Oceanography}, vol.28, pp.634--658. 

\item R.M. Ponte and D. Stammer and J. Marshall (1998). Oceanic signals in
observed motions of the Earth's pole of rotation. {\it Nature}, vol.391,
pp.476--479. 

\item D. Menemenlis and C. Wunsch (1997). Linearization of an oceanic
general circulation model for data assimilation and climate studies.
{\it Journal of Atmospheric and Oceanic Technology}, vol.14, pp.1420--1443. 

\item H. Jones and J. Marshall (1997). Restratification after deep
convection. {\it Journal of Physical Oceanography}, vol.27, pp.2276--2287. 

\item S.R. Jayne and R. Tokmakian (1997). Forcing and sampling of ocean
general circulation models: Impact of high-frequency motions. {\it Journal of
Physical Oceanography}, vol.27, pp.1173--1179. 

\end{itemize}
1	% $Header: /u/gcmpack/manual/model_uses.tex,v 1.1 2003/11/10 23:00:13 edhill Exp $
2	% $Name: $
3
4	\chapter{Model Uses}
5	\begin{rawhtml}
6	<!-- CMIREDIR:model_uses_list -->
7	\end{rawhtml}
8
9
10
11	To date, the MITgcm model has been used for number of purposes. The
12	following papers are an incomplete yet fairly broad sample of MITgcm
13	applications:
14
15	\begin{itemize}
16
17	\item R.S. Gross and I. Fukumori and D. Menemenlis (2003).
18	Atmospheric and oceanic excitation of the Earth's wobbles during 1980-2000.
19	{\it Journal of Geophysical Research-Solid Earth}, vol.108.
20
21	\item M.A. Spall and R.S. Pickart (2003).
22	Wind-driven recirculations and exchange in the Labrador and Irminger Seas.
23	{\it Journal of Physical Oceanography}, vol.33, pp.1829--1845.
24
25	\item B. Ferron and J. Marotzke (2003).
26	Impact of 4D-variational assimilation of WOCE hydrography on the
27	meridional circulation of the Indian Ocean. {\it Deep-Sea Research Part
28	II-Topical Studies in Oceanography}, vol.50, pp.2005--2021.
29
30	\item G.A. McKinley and M.J. Follows and J. Marshall and S.M. Fan (2003).
31	Interannual variability of air-sea O-2 fluxes and the determination of
32	CO2 sinks using atmospheric O-2/N-2. {\it Geophysical Research Letters},
33	vol.30.
34
35	\item B.Y. Huang and P.H. Stone and A.P. Sokolov and I.V. Kamenkovich
36	(2003). The deep-ocean heat uptake in transient climate change. {\it Journal
37	of Climate}, vol.16, pp.1352--1363.
38
39	\item G. de Coetlogon and C. Frankignoul (2003). The persistence of winter
40	sea surface temperature in the North Atlantic. {\it Journal of Climate},
41	vol.16, pp.1364--1377.
42
43	\item K.H. Nisancioglu and M.E. Raymo and P.H. Stone (2003).
44	Reorganization of Miocene deep water circulation in response to the
45	shoaling of the Central American Seaway. {\it Paleoceanography}, vol.18.
46
47	\item T. Radko and J. Marshall (2003). Equilibration of a Warm Pumped Lens
48	on a beta plane. {\it Journal of Physical Oceanography}, vol.33, pp.885--899.
49
50	\item T. Stipa (2002). The dynamics of the N/P ratio and stratification in
51	a large nitrogen-limited estuary as a result of upwelling: a tendency
52	for offshore Nodularia blooms. {\it Hydrobiologia}, vol.487, pp.219--227.
53
54	\item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P.
55	Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall
56	(2003). Volume, heat, and freshwater transports of the global ocean
57	circulation 1993-2000, estimated from a general circulation model
58	constrained by World Ocean Circulation Experiment (WOCE) data. {\it Journal
59	of Geophysical Research-Oceans}, vol.108.
60
61	\item P. Heimbach and C. Hill and R. Giering (2002). Automatic generation
62	of efficient adjoint code for a parallel Navier-Stokes solver.
63	{\it Computational Science-ICCS 2002, PT II, Proceedings}, vol.2330,
64	pp.1019--1028.
65
66	\item D. Stammer and C. Wunsch and R. Giering and C. Eckert and P.
67	Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall
68	(2002). Global ocean circulation during 1992-1997, estimated from ocean
69	observations and a general circulation model. {\it Journal of Geophysical
70	Research-Oceans}, vol.107.
71
72	\item M. Solovev and P.H. Stone and P. Malanotte-Rizzoli (2002).
73	Assessment of mesoscale eddy parameterizations for a single-basin
74	coarse-resolution ocean model. {\it Journal of Geophysical Research-Oceans},
75	vol.107.
76
77	\item C. Herbaut and J. Sirven and S. Fevrier (2002). Response of a
78	simplified oceanic general circulation model to idealized NAO-like
79	stochastic forcing. {\it Journal of Physical Oceanography}, vol.32,
80	pp.3182--3192.
81
82	\item C. Wunsch (2002). Oceanic age and transient tracers: Analytical and
83	numerical solutions. {\it Journal of Geophysical Research-Oceans}, vol.107.
84
85	\item J. Sirven and C. Frankignoul and D. de Coetlogon and V. Taillandier
86	(2002). Spectrum of wind-driven baroclinic fluctuations of the ocean in
87	the midlatitudes. {\it Journal of Physical Oceanography}, vol.32,
88	pp.2405--2417.
89
90	\item R. Zhang and M. Follows and J. Marshall (2002). Mechanisms of
91	thermohaline mode switching with application to warm equable climates.
92	{\it Journal of Climate}, vol.15, pp.2056--2072.
93
94	\item G. Brostrom (2002). On advection and diffusion of plankton in coarse
95	resolution ocean models. {\it Journal of Marine Systems}, vol.35, pp.99--110.
96
97	\item T. Lee and I. Fukumori and D. Menemenlis and Z.F. Xing and L.L. Fu
98	(2002). Effects of the Indonesian Throughflow on the Pacific and Indian
99	oceans. {\it Journal of Physical Oceanography}, vol.32, pp.1404--1429.
100
101
102	\item C. Herbaut and J. Marshall (2002). Mechanisms of buoyancy transport
103	through mixed layers and statistical signatures from isobaric floats.
104	{\it Journal of Physical Oceanography}, vol.32, pp.545--557.
105
106	\item J. Marshall and H. Jones and R. Karsten and R. Wardle (2002). Can
107	eddies set ocean stratification?, {\it Journal of Physical Oceanography},
108	vol.32, pp.26--38.
109
110	\item C. Herbaut and J. Sirven and A. Czaja (2001). An idealized model
111	study of the mass and heat transports between the subpolar and
112	subtropical gyres. {\it Journal of Physical Oceanography}, vol.31,
113	pp.2903--2916.
114
115	\item R.H. Kase and A. Biastoch and D.B. Stammer (2001). On the Mid-Depth
116	Circulation in the Labrador and Irminger Seas. {\it Geophysical Research
117	Letters}, vol.28, pp.3433--3436.
118
119	\item R. Zhang and M.J. Follows and J.P. Grotzinger and J. Marshall
120	(2001). Could the Late Permian deep ocean have been anoxic?.
121	{\it Paleoceanography}, vol.16, pp.317--329.
122
123	\item A. Adcroft and J.R. Scott and J. Marotzke (2001). Impact of
124	geothermal heating on the global ocean circulation. {\it Geophysical Research
125	Letters}, vol.28, pp.1735--1738.
126
127	\item J. Marshall and D. Jamous and J. Nilsson (2001). Entry, flux, and
128	exit of potential vorticity in ocean circulation. {\it Journal of Physical
129	Oceanography}, vol.31, pp.777--789.
130
131	\item A. Mahadevan (2001). An analysis of bomb radiocarbon trends in the
132	Pacific. {\it Marine Chemistry}, vol.73, pp.273--290.
133
134
135	\item G. Brostrom (2000). The role of the annual cycles for the air-sea
136	exchange of CO2. {\it Marine Chemistry}, vol.72, pp.151--169.
137
138	\item Y.H. Zhou and H.Q. Wu and N.H. Yu and D.W. Zheng (2000). Excitation
139	of seasonal polar motion by atmospheric and oceanic angular momentums.
140	{\it Progress in Natural Science}, vol.10, pp.931--936.
141
142	\item R. Wardle and J. Marshall (2000). Representation of eddies in
143	primitive equation models by a PV flux. {\it Journal of Physical
144	Oceanography}, vol.30, pp.2481--2503.
145
146	\item P.S. Polito and O.T. Sato and W.T. Liu (2000). Characterization and
147	validation of the heat storage variability from TOPEX/Poseidon at four
148	oceanographic sites. {\it Journal of Geophysical Research-Oceans}, vol.105,
149	pp.16911--16921.
150
151	\item R.M. Ponte and D. Stammer (2000). Global and regional axial ocean
152	angular momentum signals and length-of-day variations (1985-1996).
153	{\it Journal of Geophysical Research-Oceans}, vol.105, pp.17161--17171.
154
155	\item J. Wunsch (2000). Oceanic influence on the annual polar motion.
156	{\it Journal of GEODYNAMICS}, vol.30, pp.389--399.
157
158	\item D. Menemenlis and M. Chechelnitsky (2000). Error estimates for an
159	ocean general circulation model from altimeter and acoustic tomography
160	data. {\it Monthly Weather Review}, vol.128, pp.763--778.
161
162	\item Y.H. Zhou and D.W. Zheng and N.H. Yu and H.Q. Wu (2000). Excitation
163	of annual polar motion by atmosphere and ocean. {\it Chinese Science
164	Bulletin}, vol.45, pp.139--142.
165
166	\item J. Marotzke and R. Giering and K.Q. Zhang and D. Stammer and C. Hill
167	and T. Lee (1999). Construction of the adjoint MIT ocean general
168	circulation model and application to Atlantic heat transport
169	sensitivity. {\it Journal of Geophysical Research-Oceans}, vol.104,
170	pp.29529--29547.
171
172	\item R.M. Ponte and D. Stammer (1999). Role of ocean currents and bottom
173	pressure variability on seasonal polar motion. {\it Journal of Geophysical
174	Research-Oceans}, vol.104, pp.23393--23409.
175
176	\item J. Nastula and R.M. Ponte (1999). Further evidence for oceanic
177	excitation of polar motion. {\it Geophysical Journal International}, vol.139,
178	pp.123--130.
179
180	\item K.Q. Zhang and J. Marotzke (1999). The importance of open-boundary
181	estimation for an Indian Ocean GCM-data synthesis. {\it Journal of Marine
182	Research}, vol.57, pp.305--334.
183
184	\item J. Marshall and D. Jamous and J. Nilsson (1999). Reconciling
185	thermodynamic and dynamic methods of computation of water-mass
186	transformation rates. {\it Deep-Sea Research PART I-Oceanographic Research
187	Papers}, vol.46, pp.545--572.
188
189	\item J. Marshall and F. Schott (1999). Open-ocean convection:
190	Observations, theory, and models. {\it Reviews of Geophysics}, vol.37,
191	pp.1--64.
192
193	\item J. Marshall and H. Jones and C. Hill (1998). Efficient ocean
194	modeling using non-hydrostatic algorithms. {\it Journal of Marine Systems},
195	vol.18, pp.115--134.
196
197	\item A.B. Baggeroer and T.G. Birdsall and C. Clark and J.A. Colosi and
198	B.D. Cornuelle and D. Costa and B.D. Dushaw and M. Dzieciuch and A.M.G.
199	Forbes and C. Hill and B.M. Howe and J. Marshall and D. Menemenlis and
200	J.A. Mercer and K. Metzger and W. Munk and R.C. Spindel and D. Stammer
201	and P.F. Worcester and C. Wunsch (1998). Ocean climate change:
202	Comparison of acoustic tomography, satellite altimetry, and modeling.
203	{\it Science}, vol.281, pp.1327--1332.
204
205	\item C. Wunsch and D. Stammer (1998). Satellite altimetry, the marine
206	geoid, and the oceanic general circulation. {\it Annual Review of Earth and
207	Planetary Sciences}, vol.26, pp.219--253.
208
209	\item A. Shaw and Arvind and K.C. Cho and C. Hill and R.P. Johnson and J.
210	Marshall (1998). A comparison of implicitly parallel multithreaded and
211	data-parallel implementations of an ocean model. {\it Journal of Parallel and
212	Distributed Computing}, vol.48, pp.1--51.
213
214	\item T.W.N. Haine and J. Marshall (1998). Gravitational, symmetric, and
215	baroclinic instability of the ocean mixed layer. {\it Journal of Physical
216	Oceanography}, vol.28, pp.634--658.
217
218	\item R.M. Ponte and D. Stammer and J. Marshall (1998). Oceanic signals in
219	observed motions of the Earth's pole of rotation. {\it Nature}, vol.391,
220	pp.476--479.
221
222	\item D. Menemenlis and C. Wunsch (1997). Linearization of an oceanic
223	general circulation model for data assimilation and climate studies.
224	{\it Journal of Atmospheric and Oceanic Technology}, vol.14, pp.1420--1443.
225
226	\item H. Jones and J. Marshall (1997). Restratification after deep
227	convection. {\it Journal of Physical Oceanography}, vol.27, pp.2276--2287.
228
229	\item S.R. Jayne and R. Tokmakian (1997). Forcing and sampling of ocean
230	general circulation models: Impact of high-frequency motions. {\it Journal of
231	Physical Oceanography}, vol.27, pp.1173--1179.
232
233	\end{itemize}