--- manual/manual_todo.txt	2006/06/28 17:21:21	1.41
+++ manual/manual_todo.txt	2006/06/29 01:47:05	1.44
@@ -260,16 +260,16 @@
 
 - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)"
   to stay closer to the code.
-- mention section 2.5 implicit-Time-stepping (for vertical viscosity)
+- mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE
 
 2.3 linear free-surface: 
 - add ref(+link) to S/R names:
-- add ref(+link) to Crank-Nickelson section 2.9.1
+- add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE
 
 2.4 Adams-Bashforth
-- add stability diagrams (I have some figures that I can put)
-- add link for var. forcing_In_AB
-- add S/R link for S/R ADAMS_BASHFORTH2
+- add stability diagrams (I have some figures that I can put) <- DONE
+- add link for var. forcing_In_AB and epsil_AB <- half DONE
+- add S/R link for S/R ADAMS_BASHFORTH2 <-DONE
 
 2.5 Implicit time-stepping 
 - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R
@@ -391,97 +391,19 @@
 
 Almost all of the 'math mode' text is dropped down as subscripts
 
-3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript
-     - is this experiment in the list from section 3.4???
-3.10.3.1 - refers to figures and equations, links are broken
+3.11.3.1 - refers to figures and equations, links are broken
 
-3.11.3.2 - line 43: link to equation is broken
+3.12.3.2 - line 43: link to equation is broken
          - line 51-53: link to equation is broken
          - there is some mess of text hanging around the end of this section. remove? reformat?
 
-3.12.4.1 - line 34 - link to equation is broken
+3.13.4.1 - line 34 - link to equation is broken
          - lines 60,61 - 1st (take out the 'r' in the superscript)
 
-3.13.2 - link to theta-equation is broken
-3.13.5.4 -- ALL of the bold links to variable names are broken
+3.14.2 - link to theta-equation is broken
+3.14.5.4 -- ALL of the bold links to variable names are broken
             line 34: link to equation is broken
 
-3.15.1 - reference to 'fourth experiment' should be removed
-
-3.16.4 - strange formatting, presence of '>' symbols - remove them
-
-3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4
-3.17.3.1 - nothing filled in under file input/data - needs description
-
-3.18.2 - point to section 2 for details - need hyperlink
-
-3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true!
-         section 3.5 has the 'build' directory in the example
-
-3.20.1 - link to doc at end of section points to this section
-3.20.2 - link to doc at end of section points to this section
-
-     offline - duplicate inputs, what is it, tidy up cfc v.
-               other offline. JM thinks these need tidying up.
-
-Which of the following are which tutorial?
-adjustment.128x64x1
-adjustment.cs-32x32x1
-advect_cs
-advect_xy
-advect_xz
-aim.5l_cs
-aim.5l_Equatorial_Channel
-aim.5l_LatLon
-biogeo
-bottom_ctrl_5x5
-cfc_example
-cpl_aim+ocn
-dome
-exp2
-exp4
-exp5
-fizhi-cs-32x32x10
-fizhi-cs-aqualev20
-fizhi-gridalt-hs
-flt_example
-front_relax
-global1x1_tot
-global2x2_tot
-global_ocean.90x40x15
-global_ocean.cs32x15
-global_ocean.cubed32x32x30
-global_ocean_ebm
-global_with_exf
-hs94.128x64x5
-hs94.1x64x5
-hs94.cs-32x32x5
-ideal_2D_oce
-internal_wave
-inverted_barometer
-lab_sea
-matrix_example
-MLAdjust
-natl_box
-natl_box_adjoint
-OpenAD
-rotating_tank
-solid-body.cs-32x32x1
-tidal_basin_2d
-tutorial_baroclinic_gyre
-tutorial_barotropic_gyre
-tutorial_cfc_offline
-tutorial_deep_convection
-tutorial_global_oce_biogeo
-tutorial_global_oce_in_p
-tutorial_global_oce_latlon
-tutorial_global_oce_optim
-tutorial_held_suarez_cs
-tutorial_offline
-tutorial_plume_on_slope
-tutorial_tracer_adjsens
-vermix
-
 >>>> From Ed
 
 Here are the remaining bits for Chap 4 :