14 |
- pick a URL |
- pick a URL |
15 |
TBD |
TBD |
16 |
|
|
|
- mitgcm.org very front page. |
|
|
o too many clicks to get to model manual. |
|
|
make doc link go to mitgcm.org/r2_web_testing/latest |
|
|
and add "HowTo" reference etc... to /latest page |
|
|
|
|
17 |
- mitgcm.org/r2_web_testing/latest |
- mitgcm.org/r2_web_testing/latest |
18 |
o add another short-cut for quick download |
o add another short-cut for quick download |
19 |
|
|
25 |
Tutorials (broken) |
Tutorials (broken) |
26 |
Browse Code |
Browse Code |
27 |
|
|
|
o mitgcm.org (front content) [DONE] |
|
|
Get Code (where does this go to?) |
|
|
get rid of * CVS current bullet |
|
|
make HTML-enabled CVS code browser leap to MITgcm/MITgcm |
|
|
|
|
|
o authors |
|
|
John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen, |
|
|
Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos, |
|
|
Gael - others? |
|
|
|
|
28 |
o words on http://mitgcm.org/r2_web_testing/latest |
o words on http://mitgcm.org/r2_web_testing/latest |
29 |
change to |
change to |
30 |
"access on-line Auser manual/A and Atable of contents/A |
"access on-line Auser manual/A and Atable of contents/A |
192 |
o Gas giant? |
o Gas giant? |
193 |
|
|
194 |
|
|
195 |
Master list of packages |
>>>> from JM |
196 |
|
|
|
admtlm/ - autodiff (chapter 5) |
|
|
aim/ - 6.4.1 (content needs fixing - JM to do) |
|
|
aim_compon_interf/ - 6.6 (no content yet) |
|
|
aim_ocn_coupler/ - 6.6 (no content yet) |
|
|
aim_v23/ - retired |
|
|
atm_common/ - 6.6 (no content yet) |
|
|
autodiff/ - autodiff (chapter 5) |
|
|
bulk_force/ - 6.3.3 |
|
|
cal/ - 6.3.5 |
|
|
cd_code/ - chapter 2 (JM check) |
|
|
cfc/ - not sure |
|
|
chronos/ - AM to check |
|
|
compon_communic/ - 6.6 (no content yet) |
|
|
cost/ - not sure, check with PH |
|
|
ctrl/ - not sure, check with PH |
|
|
debug/ - JM may do something in chapter 7 (utilities) |
|
|
diagnostics/ - 7.1 |
|
|
dic/ - 6.7.2 |
|
|
ebm/ - not sure |
|
|
ecco/ - chapter 8 |
|
|
embed_files/ - add something to chapter 7 |
|
|
ex3/ - rename to exch3 |
|
|
exch2/ - 6.2.2 |
|
|
exf/ - 6.3.4 |
|
|
fizhi/ - 6.4.3 |
|
|
flt/ - in chapter 2 (JM check) |
|
|
gchem/ - 6.7.1 |
|
|
generic_advdiff/ - in chapter 2 (JM check) |
|
|
ggl90/ - nothing, (Martin?) |
|
|
gmredi/ - in chapter 2 (JM check). also need |
|
|
Ferrari & Mc tapering |
|
|
grdchk/ - grdchk (chapter 5 - check with PH) |
|
|
gridalt/ - 6.2.4 |
|
|
kpp/ - 6.3.2 |
|
|
land/ - 6.4.2 (not connected to code - JM to fix) |
|
|
matrix/ - Samar |
|
|
mdsio/ - 7.3.1 |
|
|
mnc/ - 7.2.1 |
|
|
mom_common/ - in chapter 2 (JM check) |
|
|
mom_fluxform/ - in chapter 2 (JM check) |
|
|
mom_vecinv/ - in chapter 2 (JM check) |
|
|
monitor/ - 7.4 |
|
|
my82/ - nothing, (martin?) |
|
|
obcs/ - 6.3 (needs a check) |
|
|
ocn_compon_interf/ - 6.6 (no content yet) |
|
|
offline/ - nothing, tutorials that need work but no package section entry |
|
|
opps/ - nothing, (martin?) |
|
|
pp81/ - nothing, (martin?) |
|
|
profiles/ - GAEL |
|
|
ptracers/ - JM + SD to write something |
|
|
rbcs/ - talk to steph |
|
|
runclock/ - runclock |
|
|
rw/ - not sure |
|
|
sbo/ - text in sbo_descruption.tex but not linked into |
|
|
part6 |
|
|
seaice/ - 6.5.2 - no equations, dimitris has promised some |
|
|
shap_filt/ - chapter 2, JM to check |
|
|
shelfice/ - nothing yet (martin?) |
|
|
solver/ - empty |
|
|
sphere/ - chapter 5 or 8 (PH to check) |
|
|
therm_seaice/ - empty |
|
|
thsice/ - 6.5.1 (JM to update?) |
|
|
timeave/ - retiring...... |
|
|
zonal_filt/ - chapter 2 (JM to check) |
|
197 |
|
|
198 |
Possible for chap 7 - Daniels grafix/ stuff |
manual, section.2 : |
199 |
|
|
200 |
Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
In general: |
201 |
|
- add more refences/links to S/R & variable name |
202 |
|
- would be nice to have an active link to the fortran-file |
203 |
|
for all the S/R & eq.Number in the "calling-tree" boxes |
204 |
|
- search for CALC_MOM_RHS and replace it by the appropriate S/R |
205 |
|
(mom_flux_form, mom_vecinv, dynamics) |
206 |
|
- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
207 |
|
was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
208 |
|
in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
209 |
|
simply written \vec{v}. |
210 |
|
I would suggest to keep the notation as they are (since they are consistent |
211 |
|
inside each section) but may be to move the "notation.tex" piece |
212 |
|
at the beginning of section.2 and to mention clearly the changes between |
213 |
|
the 2 sections. |
214 |
|
|
215 |
Figure 6.8 is missing |
in content: Horizontal Dissipation: 2 times in vector-invariant section |
216 |
|
|
217 |
|
2.1 time-stepping (part2/time_stepping.tex) |
218 |
|
|
219 |
>>>> From Ed |
- this is not clear to me: |
220 |
|
|
221 |
Here are the remaining bits for Chap 4 : |
>> In all the above configurations it is also possible to substitute the |
222 |
|
>> Adams-Bashforth with an alternative time-stepping scheme for terms |
223 |
|
>> evaluated explicitly in time |
224 |
|
|
|
- The grammar/flow could still use some work. Boo was an English |
|
|
major and has experience editing/proofing technical papers. I |
|
|
could print out a copy and ask her to read it and suggest |
|
|
improvements. |
|
225 |
|
|
226 |
- missing references (if you point me towards URLs, I'll add them |
2.2 rigid-lid: |
|
to the bibliography): |
|
|
\ref{ref hoe and hill, ecmwf} |
|
|
\ref{magicgarden} |
|
|
\ref{IBMLAPI} |
|
|
\ref{Memorychannel} |
|
|
\ref{hoe-hill:99} |
|
227 |
|
|
228 |
- There are a few empty sub-sections at the end of Chap 4 that |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
229 |
should either be commented out or fleshed out. |
to stay closer to the code. |
230 |
|
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) |
231 |
|
|
232 |
and thats about it for Chap 4. |
2.3 linear free-surface: |
233 |
|
- add ref(+link) to S/R names: |
234 |
|
- add ref(+link) to Crank-Nickelson section 2.9.1 |
235 |
|
|
236 |
|
2.4 Adams-Bashforth |
237 |
|
- add stability diagrams (I have some figures that I can put) |
238 |
|
- add link for var. forcing_In_AB |
239 |
|
- add S/R link for S/R ADAMS_BASHFORTH2 |
240 |
|
|
241 |
Add more to quick links on front page |
2.5 Implicit time-stepping |
242 |
|
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
243 |
|
SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL |
244 |
|
- update: also used for vertical advection |
245 |
|
|
246 |
Chapter 6 |
2.6 Synchronous time-stepping: |
247 |
|
- add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE, |
248 |
|
MOMENTUM_CORRECTION_STEP. |
249 |
|
|
250 |
the master package diagram does not appear in the document |
2.7 Stagger baroclinic time-stepping |
251 |
|
- mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end |
252 |
|
|
253 |
pkg/ptracers doesn't seem to have any documentation (see packages list below) |
2.8 NH |
254 |
|
- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
255 |
|
|
256 |
|
2.9 Variants on Free-Surface |
257 |
|
- Delta.t mis-written (eq.2.73) |
258 |
|
- Eq.Num missing (has been fixed since) |
259 |
|
- u* is stored in gU (and not in gUnm1) |
260 |
|
- Phi_nh in NH_VARS.h |
261 |
|
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
262 |
|
INI_CG2D, INI_CG3D |
263 |
|
|
264 |
>>>> From Andrea |
2.9.1 Crank-Nickelson |
265 |
|
- link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater |
266 |
|
|
267 |
|
2.9.2 NLFS |
268 |
|
- eq.Nb are wrong in html |
269 |
|
- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
270 |
|
|
271 |
to do list for chap 7: |
2.10.1 Notation |
272 |
|
- Area definition is not really used like this |
273 |
|
|
274 |
|
>> Ao : Area of the face orthogonal to "o" direction (o=u,v,w) |
275 |
|
|
276 |
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
277 |
the links are pointing to the proper place |
the model variables) are used (e.g., see section 2.10.5) |
278 |
|
|
279 |
7.5.1 - add Graphix to the list of stuff in utils/matlab |
2.10.5 Horizontal grid: |
280 |
7.5.2 - empty |
- fig.2.8 : should use Aw,As consistently in this figure description, |
281 |
|
in the figure itself, as it is in the text. |
282 |
|
- curvilinear: |
283 |
|
to add: mention the angle of the grid direction relative to |
284 |
|
Eastward, Northward direction. |
285 |
|
+ mention horizGridFile= in file "data" (PARM04) |
286 |
|
- add cylindrical polar grid description |
287 |
|
need to do a better job of relating model variables to this diagram |
288 |
|
|
289 |
|
|
290 |
andrea |
2.11 Continuity & Horizontal Pressure gradient terms |
291 |
|
- mention that d.Phi/dr|s =g if using z coordinate |
292 |
|
- eq. 2.90 not clear regarding \delta_k(P-E) |
293 |
|
better to add the free surface eq: d.eta/dt = w_s + P-E |
294 |
|
|
295 |
|
2.12 Hydrostatic balance |
296 |
|
- add ref to Atmosphere Appendix section (1.4) since Adcroft 2002 |
297 |
|
is hard to find |
298 |
|
- add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H) |
299 |
|
and in section 1.3.4: remove the 1.3.4.3.2 subsection: |
300 |
|
Quasi-nonhydrostatic Atmosphere |
301 |
|
|
302 |
|
2.13.2 Coriolis terms |
303 |
|
- note: the discretization used when useEnergyConservingCoriolis=T |
304 |
|
has no hFac and no Area and is still different from the form |
305 |
|
described here (with Area & hFac); |
306 |
|
|
307 |
|
2.13.5 Lateral dissipation |
308 |
|
- add description of how to use cosFactor & cosPower |
309 |
|
- add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4 |
310 |
|
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
311 |
|
in code need to explain why cos()3/2 turns out to be |
312 |
|
scaling (not cos()2) |
313 |
|
- need to reference the smag/leith section. |
314 |
|
|
315 |
|
2.13.6 Vertical dissipation |
316 |
|
- mention the implicit vertical viscosity option and ref to section 2.5 |
317 |
|
- add the parameter correspondence: Av <-> viscAr (and might change also |
318 |
|
the notation to Ar) |
319 |
|
|
320 |
|
2.14 Vector invariant momentum equations |
321 |
|
- indicate that the NH pieces (vertical momentum eq) are not yet coded |
322 |
|
and that the NH code uses the flux form. |
323 |
|
|
324 |
|
2.14.6 Horizontal dissipation -> Horizontal Divergence |
325 |
|
|
326 |
|
2.14.7 Horizontal dissipation |
327 |
|
- add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ |
328 |
|
and A_D4,A_z4 <-> viscA4D,viscA4Z |
329 |
|
|
330 |
|
2.16 & 2.17 & 2.18 : |
331 |
|
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
332 |
|
|
333 |
|
2.20.2 mercator, non-dimensional Equations: |
334 |
|
- does not use std notation |
335 |
|
- would be better as an appendix of section 2.20: |
336 |
|
(e.g changing the tile to: |
337 |
|
- talk to Baylor |
338 |
|
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
339 |
|
|
340 |
|
|
341 |
|
JM |
342 |
|
|
343 |
|
|
344 |
>>>> From Andrea |
>>>> From Andrea |
345 |
|
|
351 |
divide chapter 3 more clearly into 2 sections? |
divide chapter 3 more clearly into 2 sections? |
352 |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
353 |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
354 |
|
[DONE] |
355 |
|
|
356 |
3.1 - don't need a link to the outside of the document (remove it) |
3.1 - don't need a link to the outside of the document (remove it) |
357 |
- link to htdig is broken |
- link to htdig is broken |
437 |
offline - duplicate inputs, what is it, tidy up cfc v. |
offline - duplicate inputs, what is it, tidy up cfc v. |
438 |
other offline. JM thinks these need tidying up. |
other offline. JM thinks these need tidying up. |
439 |
|
|
440 |
>>>> from JM |
Which of the following are which tutorial? |
441 |
|
! MLAdjust |
442 |
|
adjust_nlfs.cs-32x32x1 |
443 |
|
aim.5l_XZ_Equatorial_Slice |
444 |
manual, section.2 : |
biogeo |
445 |
|
aim.5l_zon-ave |
446 |
In general: |
coupled_ucla |
447 |
- add more refences/links to S/R & variable name |
cfc_offline |
448 |
- would be nice to have an active link to the fortran-file |
exp3 |
449 |
for all the S/R & eq.Number in the "calling-tree" boxes |
global2x2_tot |
450 |
- search for CALC_MOM_RHS and replace it by the appropriate S/R |
global1x1_tot |
451 |
(mom_flux_form, mom_vecinv, dynamics) |
global_ocean.cubed_wEXF |
452 |
- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
global_with_CFC11 |
453 |
was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
goz |
454 |
in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
gop |
455 |
simply written \vec{v}. |
natl_box_obcs |
456 |
I would suggest to keep the notation as they are (since they are consistent |
natl_box_forward |
457 |
inside each section) but may be to move the "notation.tex" piece |
spinup_optim |
458 |
at the beginning of section.2 and to mention clearly the changes between |
tutorial_held_suarez_cs |
459 |
the 2 sections. |
vero |
460 |
|
inverted_barometer |
461 |
in content: Horizontal Dissipation: 2 times in vector-invariant section |
global_ocean.cubed32x32x30 |
462 |
|
exp1 |
463 |
2.1 time-stepping (part2/time_stepping.tex) |
advect_cs |
464 |
|
dic_example |
465 |
|
fizhi-gridalt-hs |
466 |
|
global_ocean_pressure |
467 |
|
matrix_example |
468 |
|
exp4 |
469 |
|
solid-body.cs-32x32x1 |
470 |
|
cfc_example |
471 |
|
flt_example |
472 |
|
adjustment.cs-32x32x1 |
473 |
|
advect_xz |
474 |
|
rotating_tank |
475 |
|
ideal_2D_oce |
476 |
|
global_ocean.90x40x15 |
477 |
|
front_relax |
478 |
|
aim.5l_LatLon |
479 |
|
lab_sea |
480 |
|
hs94.cs-32x32x5 |
481 |
|
global_with_exf |
482 |
|
exp2 |
483 |
|
tidal_basin_2d |
484 |
|
fizhi-cs-32x32x10 |
485 |
|
exp5 |
486 |
|
global_ocean.cs32x15 |
487 |
|
OpenAD |
488 |
|
hs94.1x64x5 |
489 |
|
fizhi-cs-aqualev10 |
490 |
|
exp0 |
491 |
|
dome |
492 |
|
aim.5l_Equatorial_Channel |
493 |
|
aim.5l_cs |
494 |
|
hs94.128x64x5 |
495 |
|
prm |
496 |
|
carbon |
497 |
|
plume_on_slope |
498 |
|
natl_box_adjoint |
499 |
|
vermix |
500 |
|
cpl_aim+ocn |
501 |
|
global_ocean_ebm |
502 |
|
internal_wave |
503 |
|
advect_xy |
504 |
|
natl_box |
505 |
|
adjustment.128x64x1 |
506 |
|
|
507 |
- this is not clear to me: |
>>>> From Ed |
|
|
|
|
>> In all the above configurations it is also possible to substitute the |
|
|
>> Adams-Bashforth with an alternative time-stepping scheme for terms |
|
|
>> evaluated explicitly in time |
|
|
|
|
|
|
|
|
2.2 rigid-lid: |
|
508 |
|
|
509 |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
Here are the remaining bits for Chap 4 : |
|
to stay closer to the code. |
|
|
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) |
|
510 |
|
|
511 |
2.3 linear free-surface: |
- missing references (if you point me towards URLs, I'll add them |
512 |
- add ref(+link) to S/R names: |
to the bibliography): |
513 |
- add ref(+link) to Crank-Nickelson section 2.9.1 |
\ref{ref hoe and hill, ecmwf} |
514 |
|
\ref{magicgarden} |
515 |
|
\ref{IBMLAPI} |
516 |
|
\ref{Memorychannel} |
517 |
|
\ref{hoe-hill:99} |
518 |
|
|
519 |
2.4 Adams-Bashforth |
- There are a few empty sub-sections at the end of Chap 4 that |
520 |
- add stability diagrams (I have some figures that I can put) |
should either be commented out or fleshed out. |
|
- add link for var. forcing_In_AB |
|
|
- add S/R link for S/R ADAMS_BASHFORTH2 |
|
521 |
|
|
522 |
2.5 Implicit time-stepping |
and thats about it for Chap 4. |
|
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
|
|
SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL |
|
|
- update: also used for vertical advection |
|
523 |
|
|
|
2.6 Synchronous time-stepping: |
|
|
- add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE, |
|
|
MOMENTUM_CORRECTION_STEP. |
|
524 |
|
|
525 |
2.7 Stagger baroclinic time-stepping |
Add more to quick links on front page |
|
- mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end |
|
526 |
|
|
527 |
2.8 NH |
Chapter 6 |
|
- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
|
528 |
|
|
529 |
2.9 Variants on Free-Surface |
the master package diagram does not appear in the document |
|
- Delta.t mis-written (eq.2.73) |
|
|
- Eq.Num missing (has been fixed since) |
|
|
- u* is stored in gU (and not in gUnm1) |
|
|
- Phi_nh in NH_VARS.h |
|
|
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
|
|
INI_CG2D, INI_CG3D |
|
530 |
|
|
531 |
2.9.1 Crank-Nickelson |
Master list of packages (add this to beginning of chap 6) |
|
- link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater |
|
|
|
|
|
2.9.2 NLFS |
|
|
- eq.Nb are wrong in html |
|
|
- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
|
532 |
|
|
533 |
2.10.1 Notation |
admtlm/ - autodiff (chapter 5) |
534 |
- Area definition is not really used like this |
aim/ - retired |
535 |
|
aim_compon_interf/ - 6.6 (no content yet)(Daniel + JM) |
536 |
|
aim_ocn_coupler/ - 6.6 (no content yet) |
537 |
|
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
538 |
|
atm_common/ - nothing in this package (6.4.1 related) |
539 |
|
autodiff/ - autodiff (chapter 5) |
540 |
|
bulk_force/ - 6.3.3 |
541 |
|
cal/ - 6.3.5 |
542 |
|
cd_code/ - chapter 2 (JM check add a reference to paper, |
543 |
|
mention parameter in data) |
544 |
|
cfc/ - not sure (CNH to talk to Steph and Helen) |
545 |
|
chronos/ - AM to check (not being used - Andrea to kill it) |
546 |
|
compon_communic/ - 6.6 (no content yet)(Daniel + JM) |
547 |
|
cost/ - not sure, check with PH |
548 |
|
ctrl/ - not sure, check with PH |
549 |
|
debug/ - JM may do something in chapter 7 (utilities) |
550 |
|
diagnostics/ - 7.1 |
551 |
|
dic/ - 6.7.2 |
552 |
|
ebm/ - (check with PH) |
553 |
|
ecco/ - chapter 8 |
554 |
|
embed_files/ - add something to chapter 7 |
555 |
|
exch2/ - 6.2.2 |
556 |
|
exf/ - 6.3.4 |
557 |
|
fizhi/ - 6.4.3 |
558 |
|
flt/ - (PH check) |
559 |
|
gchem/ - 6.7.1 |
560 |
|
generic_advdiff/ - in chapter 2 (JM check) |
561 |
|
ggl90/ - nothing, (Martin?) |
562 |
|
gmredi/ - in chapter 2 (JM check). also need |
563 |
|
Ferrari & Mc transition zone stuff (Samar doing this) |
564 |
|
get dfer to read this |
565 |
|
grdchk/ - grdchk (chapter 5 - check with PH) |
566 |
|
gridalt/ - 6.2.4 |
567 |
|
kpp/ - 6.3.2 |
568 |
|
land/ - 6.4.2 (not connected to code Rong's notes - JM to fix) |
569 |
|
matrix/ - Samar |
570 |
|
mdsio/ - 7.3.1 |
571 |
|
mnc/ - 7.2.1 |
572 |
|
mom_common/ - in chapter 2 (JM check) |
573 |
|
mom_fluxform/ - in chapter 2 (JM check) |
574 |
|
mom_vecinv/ - in chapter 2 (JM check) |
575 |
|
monitor/ - 7.4 |
576 |
|
my82/ - nothing, (martin?) |
577 |
|
obcs/ - 6.3 (needs a check - ask PH to read) |
578 |
|
ocn_compon_interf/ - 6.6 (no content yet) |
579 |
|
offline/ - nothing, tutorials that need work but no package section entry |
580 |
|
trivial to document (CNH to do) |
581 |
|
opps/ - nothing, (martin?) |
582 |
|
pp81/ - nothing, (martin?) |
583 |
|
profiles/ - GAEL |
584 |
|
ptracers/ - JM + SD + Martin to write something (nothing for this |
585 |
|
at the moment) |
586 |
|
AM has diagnostics table for this. |
587 |
|
rbcs/ - CNH to talk to steph |
588 |
|
runclock/ - runclock - CNH |
589 |
|
rw/ - not sure - going to stay says JMC. quick IO calls |
590 |
|
JMC to write a quick note for that. |
591 |
|
sbo/ - text in sbo_descruption.tex but not linked into |
592 |
|
part6 - CNH |
593 |
|
seaice/ - 6.5.2 - no equations, dimitris has promised some |
594 |
|
shap_filt/ - chapter 2, JM to check |
595 |
|
shelfice/ - nothing yet (martin?) |
596 |
|
solver/ - empty (go away?) |
597 |
|
sphere/ - chapter 5 or 8 (PH to check) |
598 |
|
therm_seaice/ - empty (go away?) |
599 |
|
thsice/ - 6.5.1 (JM to update?) |
600 |
|
timeave/ - retiring...... |
601 |
|
zonal_filt/ - chapter 2 (JM to check) |
602 |
|
|
603 |
>> Ao : Area of the face orthogonal to "o" direction (o=u,v,w) |
list an expeiment which uses package? CNH |
604 |
|
|
605 |
Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
[DONE]Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
|
the model variables) are used (e.g., see section 2.10.5) |
|
606 |
|
|
607 |
2.10.5 Horizontal grid: |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
608 |
- fig.2.8 : should use Aw,As consistently in this figure description, |
Figure 6.8 is missing |
|
in the figure itself, as it is in the text. |
|
|
- curvilinear: |
|
|
to add: mention the angle of the grid direction relative to |
|
|
Eastward, Northward direction. |
|
|
+ mention horizGridFile= in file "data" (PARM04) |
|
|
- add cylindrical grid description |
|
|
need to do a better job of relating model variables to this diagram |
|
609 |
|
|
610 |
|
|
611 |
2.11 Continuity & Horizontal Pressure gradient terms |
>>>> From Andrea |
|
- mention that d.Phi/dr|s =g if using z coordinate |
|
|
- eq. 2.90 not clear regarding \delta_k(P-E) |
|
|
better to add the free surface eq: d.eta/dt = w_s + P-E |
|
612 |
|
|
613 |
2.12 Hydrostatic balance |
to do list for chap 7: |
|
- add ref to Atmosphere Appendix section (1.4) since Adcroft 2002 |
|
|
is hard to find |
|
|
- add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H) |
|
|
and in section 1.3.4: remove the 1.3.4.3.2 subsection: |
|
|
Quasi-nonhydrostatic Atmosphere |
|
614 |
|
|
|
2.13.2 Coriolis terms |
|
|
- note: the discretization used when useEnergyConservingCoriolis=T |
|
|
has no hFac and no Area and is still different from the form |
|
|
described here (with Area & hFac); |
|
615 |
|
|
616 |
2.13.5 Lateral dissipation |
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
617 |
- add description of how to use cosFactor & cosPower |
the links are pointing to the proper place |
|
- add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4 |
|
|
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
|
|
in code need to explain why cos()3/2 turns out to be |
|
|
scaling (not cos()2) |
|
618 |
|
|
619 |
2.13.6 Vertical dissipation |
7.5.1 - add Graphix to the list of stuff in utils/matlab |
620 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
7.5.2 - empty |
|
- add the parameter correspondence: Av <-> viscAr (and might change also |
|
|
the notation to Ar) |
|
621 |
|
|
|
2.14 Vector invariant momentum equations |
|
|
- indicate that the NH pieces (vertical momentum eq) are not yet coded |
|
|
and that the NH code uses the flux form. |
|
622 |
|
|
623 |
2.14.6 Horizontal dissipation -> Horizontal Divergence |
andrea |
624 |
|
|
|
2.14.7 Horizontal dissipation |
|
|
- add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ |
|
|
and A_D4,A_z4 <-> viscA4D,viscA4Z |
|
625 |
|
|
626 |
2.16 & 2.17 & 2.18 : |
9. Publications using MITgcm --> "Previous Applications of MITgcm" |
627 |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
628 |
|
(check in support for more names) |
629 |
|
|
630 |
2.20.2 mercator, non-dimensional Equations: |
10. Under development |
|
- does not use std notation |
|
|
- would be better as an appendix of section 2.20: |
|
|
(e.g changing the tile to: |
|
|
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
|
631 |
|
|
|
JM |
|
632 |
|
|
633 |
|
Bibliography |
634 |
|
|
635 |
9. Model uses |
tidy up from misc - .tex |
|
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
|
|
(check in support for more names) |
|