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revision 1.9 by cnh, Thu Apr 6 19:54:06 2006 UTC revision 1.27 by cnh, Thu Apr 6 20:57:57 2006 UTC
# Line 14  o HTML, scripts and front content Line 14  o HTML, scripts and front content
14    - pick a URL    - pick a URL
15      TBD      TBD
16    
   - mitgcm.org very front page.  
     o too many clicks to get to model manual.  
       make doc link go to mitgcm.org/r2_web_testing/latest  
       and add "HowTo" reference etc... to /latest page  
   
17    - mitgcm.org/r2_web_testing/latest    - mitgcm.org/r2_web_testing/latest
18      o add another short-cut for quick download      o add another short-cut for quick download
19    
# Line 207  o Latex Line 202  o Latex
202            o Gas giant?            o Gas giant?
203    
204    
205  Master list of packages  >>>> from JM
206    
 admtlm/               - autodiff (chapter 5)  
 aim/                  - 6.4.1 (content needs fixing - JM to do)  
 aim_compon_interf/    - 6.6 (no content yet)  
 aim_ocn_coupler/      - 6.6 (no content yet)  
 aim_v23/              - retired  
 atm_common/           - 6.6 (no content yet)  
 autodiff/             - autodiff (chapter 5)  
 bulk_force/           - 6.3.3  
 cal/                  - 6.3.5  
 cd_code/              - chapter 2 (JM check)  
 cfc/                  - not sure  
 chronos/              - AM to check  
 compon_communic/      - 6.6 (no content yet)  
 cost/                 - not sure, check with PH  
 ctrl/                 - not sure, check with PH  
 debug/                - JM may do something in chapter 7 (utilities)  
 diagnostics/          - 7.1  
 dic/                  - 6.7.2  
 ebm/                  - not sure  
 ecco/                 - chapter 8  
 embed_files/          - add something to chapter 7  
 ex3/                  - rename to exch3  
 exch2/                - 6.2.2  
 exf/                  - 6.3.4  
 fizhi/                - 6.4.3  
 flt/                  - in chapter 2 (JM check)  
 gchem/                - 6.7.1  
 generic_advdiff/      - in chapter 2 (JM check)  
 ggl90/                - nothing, (Martin?)  
 gmredi/               - in chapter 2 (JM check). also need  
                         Ferrari & Mc tapering  
 grdchk/               - grdchk (chapter 5 - check with PH)  
 gridalt/              - 6.2.4  
 kpp/                  - 6.3.2  
 land/                 - 6.4.2 (not connected to code - JM to fix)  
 matrix/               - Samar  
 mdsio/                - 7.3.1  
 mnc/                  - 7.2.1  
 mom_common/           - in chapter 2 (JM check)  
 mom_fluxform/         - in chapter 2 (JM check)  
 mom_vecinv/           - in chapter 2 (JM check)  
 monitor/              - 7.4  
 my82/                 - nothing, (martin?)  
 obcs/                 - 6.3 (needs a check)  
 ocn_compon_interf/    - 6.6 (no content yet)  
 offline/              - nothing, tutorials that need work but no package   section entry  
 opps/                 - nothing, (martin?)  
 pp81/                 - nothing, (martin?)  
 profiles/             - GAEL  
 ptracers/             - JM + SD to write something  
 rbcs/                 - talk to steph  
 runclock/             - runclock  
 rw/                   - not sure  
 sbo/                  - text in sbo_descruption.tex but not linked into  
                         part6  
 seaice/               - 6.5.2 - no equations, dimitris has promised some  
 shap_filt/            - chapter 2, JM to check  
 shelfice/             - nothing yet (martin?)  
 solver/               - empty  
 sphere/               - chapter 5 or 8 (PH to check)  
 therm_seaice/         - empty  
 thsice/               - 6.5.1 (JM to update?)  
 timeave/              - retiring......  
 zonal_filt/           - chapter 2 (JM to check)  
207    
208  Possible for chap 7 - Daniels grafix/ stuff  manual, section.2 :
209    
210  Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started.  In general:
211    - add more refences/links to S/R & variable name
212    - would be nice to have an active link to the fortran-file
213      for all the S/R & eq.Number in the "calling-tree" boxes
214    - search for CALC_MOM_RHS and replace it by the appropriate S/R
215      (mom_flux_form, mom_vecinv, dynamics)
216    - Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h})
217    was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}}
218    in section.2, \vec{\bf v} is used instead and 3.D velocity vector is
219    simply written \vec{v}.
220    I would suggest to keep the notation as they are (since they are consistent
221    inside each section) but may be to move the "notation.tex" piece
222    at the beginning of section.2 and to mention clearly the changes between
223    the 2 sections.
224    
225  Figure 6.8 is missing  in content: Horizontal Dissipation: 2 times in vector-invariant section
226    
227    2.1 time-stepping (part2/time_stepping.tex)
228    
229  >>>> From Ed  - this is not clear to me:
230    
231  Here are the remaining bits for Chap 4 :  >> In all the above configurations it is also possible to substitute the
232    >> Adams-Bashforth with an alternative time-stepping scheme for terms
233    >> evaluated explicitly in time
234    
  - The grammar/flow could still use some work.  Boo was an English  
    major and has experience editing/proofing technical papers.  I  
    could print out a copy and ask her to read it and suggest  
    improvements.  
235    
236   - missing references (if you point me towards URLs, I'll add them  2.2 rigid-lid:
    to the bibliography):  
      \ref{ref hoe and hill, ecmwf}  
      \ref{magicgarden}  
      \ref{IBMLAPI}  
      \ref{Memorychannel}  
      \ref{hoe-hill:99}  
237    
238   - There are a few empty sub-sections at the end of Chap 4 that  - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)"
239     should either be commented out or fleshed out.    to stay closer to the code.
240    - mention section 2.5 implicit-Time-stepping (for vertical viscosity)
241    
242  and thats about it for Chap 4.  2.3 linear free-surface:
243    - add ref(+link) to S/R names:
244    - add ref(+link) to Crank-Nickelson section 2.9.1
245    
246    2.4 Adams-Bashforth
247    - add stability diagrams (I have some figures that I can put)
248    - add link for var. forcing_In_AB
249    - add S/R link for S/R ADAMS_BASHFORTH2
250    
251  Add more to quick links on front page  2.5 Implicit time-stepping
252    - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R
253            SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL
254    - update: also used for vertical advection
255    
256  Chapter 6  2.6 Synchronous time-stepping:
257    - add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE,  
258                       MOMENTUM_CORRECTION_STEP.
259    
260     the master package diagram does not appear in the document  2.7 Stagger baroclinic time-stepping
261    - mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end
262    
263     pkg/ptracers doesn't seem to have any documentation (see packages list below)  2.8 NH
264    - add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D
265    
266    2.9 Variants on Free-Surface
267    - Delta.t mis-written (eq.2.73)
268    - Eq.Num missing (has been fixed since)
269    - u* is stored in gU (and not in gUnm1)
270    - Phi_nh in NH_VARS.h
271    - add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D,
272      INI_CG2D, INI_CG3D
273    
274  >>>> From Andrea  2.9.1 Crank-Nickelson
275    - link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater
276    
277    2.9.2 NLFS
278    - eq.Nb are wrong in html
279    - 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi)
280    
281  to do list for chap 7:  2.10.1 Notation
282    - Area definition is not really used like this
283    
284    >> Ao : Area of the face orthogonal to "o" direction (o=u,v,w)
285    
286  7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu"    Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to
287          the links are pointing to the proper place    the model variables) are used (e.g., see section 2.10.5)
288    
289  7.5.1 - add Graphix to the list of stuff in utils/matlab  2.10.5 Horizontal grid:
290  7.5.2 - empty  - fig.2.8 : should use Aw,As consistently in this figure description,
291      in the figure itself, as it is in the text.
292    - curvilinear:
293      to add: mention the angle of the grid direction relative to
294      Eastward, Northward direction.
295      + mention horizGridFile= in file "data" (PARM04)
296    - add cylindrical polar grid description
297       need to do a better job of relating model variables to this diagram
298    
299    
300  andrea  2.11 Continuity & Horizontal Pressure gradient terms
301     - mention that d.Phi/dr|s =g if using z coordinate
302     - eq. 2.90 not clear regarding \delta_k(P-E)
303     better to add the free surface eq: d.eta/dt = w_s + P-E
304    
305    2.12 Hydrostatic balance
306     - add ref to Atmosphere Appendix section (1.4) since Adcroft 2002
307       is hard to find
308     - add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H)
309        and in section 1.3.4: remove the 1.3.4.3.2 subsection:
310                           Quasi-nonhydrostatic Atmosphere
311    
312    2.13.2 Coriolis terms
313     - note: the discretization used when useEnergyConservingCoriolis=T  
314       has no hFac and no Area and is still different from the form
315       described here (with Area & hFac);
316    
317    2.13.5 Lateral dissipation
318     - add description of how to use cosFactor & cosPower
319     - add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4
320        o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags
321          in code need to explain why cos()3/2 turns out to be
322          scaling (not cos()2)
323     - need to reference the smag/leith section.
324    
325    2.13.6 Vertical dissipation
326     - mention the implicit vertical viscosity option and ref to section 2.5
327     - add the parameter correspondence: Av <-> viscAr (and might change also
328       the notation to Ar)
329    
330    2.14 Vector invariant momentum equations
331     - indicate that the NH pieces (vertical momentum eq) are not yet coded
332       and that the NH code uses the flux form.
333    
334    2.14.6 Horizontal dissipation -> Horizontal Divergence
335    
336    2.14.7 Horizontal dissipation
337     - add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ  
338       and A_D4,A_z4 <-> viscA4D,viscA4Z
339    
340    2.16 & 2.17 & 2.18 :
341     - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options
342    
343    2.20.2 mercator, non-dimensional Equations:
344    - does not use std notation
345    - would be better as an appendix of section 2.20:
346    (e.g changing the tile to:
347    - talk to Baylor
348     Appendix: non-dimensional Equations on Spherical-Polar grid.)
349    
350    
351    JM
352    
353    
354  >>>> From Andrea  >>>> From Andrea
355    
# Line 337  Almost all of the 'math mode' text is dr Line 361  Almost all of the 'math mode' text is dr
361  divide chapter 3 more clearly into 2 sections?  divide chapter 3 more clearly into 2 sections?
362     (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and     (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and
363      then 3.19 and 3.20 are informational again - rearrange subsections?)      then 3.19 and 3.20 are informational again - rearrange subsections?)
364    [DONE]
365    
366  3.1 - don't need a link to the outside of the document (remove it)  3.1 - don't need a link to the outside of the document (remove it)
367      - link to htdig is broken      - link to htdig is broken
# Line 422  the verification directory Line 447  the verification directory
447       offline - duplicate inputs, what is it, tidy up cfc v.       offline - duplicate inputs, what is it, tidy up cfc v.
448                 other offline. JM thinks these need tidying up.                 other offline. JM thinks these need tidying up.
449    
450  >>>> from JM  Which of the following are which tutorial?
451    ! MLAdjust
452    adjust_nlfs.cs-32x32x1
453    aim.5l_XZ_Equatorial_Slice
454  manual, section.2 :  biogeo
455    aim.5l_zon-ave
456  In general:  coupled_ucla
457  - add more refences/links to S/R & variable name  cfc_offline
458  - would be nice to have an active link to the fortran-file  exp3
459    for all the S/R & eq.Number in the "calling-tree" boxes  global2x2_tot
460  - search for CALC_MOM_RHS and replace it by the appropriate S/R  global1x1_tot
461    (mom_flux_form, mom_vecinv, dynamics)  global_ocean.cubed_wEXF
462  - Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h})  global_with_CFC11
463  was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}}  goz
464  in section.2, \vec{\bf v} is used instead and 3.D velocity vector is  gop
465  simply written \vec{v}.  natl_box_obcs
466  I would suggest to keep the notation as they are (since they are consistent  natl_box_forward
467  inside each section) but may be to move the "notation.tex" piece  spinup_optim
468  at the beginning of section.2 and to mention clearly the changes between  tutorial_held_suarez_cs
469  the 2 sections.  vero
470    inverted_barometer
471  in content: Horizontal Dissipation: 2 times in vector-invariant section  global_ocean.cubed32x32x30
472    exp1
473  2.1 time-stepping (part2/time_stepping.tex)  advect_cs
474    dic_example
475    fizhi-gridalt-hs
476    global_ocean_pressure
477    matrix_example
478    exp4
479    solid-body.cs-32x32x1
480    cfc_example
481    flt_example
482    adjustment.cs-32x32x1
483    advect_xz
484    rotating_tank
485    ideal_2D_oce
486    global_ocean.90x40x15
487    front_relax
488    aim.5l_LatLon
489    lab_sea
490    hs94.cs-32x32x5
491    global_with_exf
492    exp2
493    tidal_basin_2d
494    fizhi-cs-32x32x10
495    exp5
496    global_ocean.cs32x15
497    OpenAD
498    hs94.1x64x5
499    fizhi-cs-aqualev10
500    exp0
501    dome
502    aim.5l_Equatorial_Channel
503    aim.5l_cs
504    hs94.128x64x5
505    prm
506    carbon
507    plume_on_slope
508    natl_box_adjoint
509    vermix
510    cpl_aim+ocn
511    global_ocean_ebm
512    internal_wave
513    advect_xy
514    natl_box
515    adjustment.128x64x1
516    
517  - this is not clear to me:  >>>> From Ed
   
 >> In all the above configurations it is also possible to substitute the  
 >> Adams-Bashforth with an alternative time-stepping scheme for terms  
 >> evaluated explicitly in time  
   
   
 2.2 rigid-lid:  
518    
519  - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)"  Here are the remaining bits for Chap 4 :
   to stay closer to the code.  
 - mention section 2.5 implicit-Time-stepping (for vertical viscosity)  
520    
521  2.3 linear free-surface:   - missing references (if you point me towards URLs, I'll add them
522  - add ref(+link) to S/R names:     to the bibliography):
523  - add ref(+link) to Crank-Nickelson section 2.9.1       \ref{ref hoe and hill, ecmwf}
524         \ref{magicgarden}
525         \ref{IBMLAPI}
526         \ref{Memorychannel}
527         \ref{hoe-hill:99}
528    
529  2.4 Adams-Bashforth   - There are a few empty sub-sections at the end of Chap 4 that
530  - add stability diagrams (I have some figures that I can put)     should either be commented out or fleshed out.
 - add link for var. forcing_In_AB  
 - add S/R link for S/R ADAMS_BASHFORTH2  
531    
532  2.5 Implicit time-stepping  and thats about it for Chap 4.
 - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R  
         SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL  
 - update: also used for vertical advection  
533    
 2.6 Synchronous time-stepping:  
 - add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE,    
                    MOMENTUM_CORRECTION_STEP.  
534    
535  2.7 Stagger baroclinic time-stepping  Add more to quick links on front page
 - mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end  
536    
537  2.8 NH  Chapter 6
 - add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D  
538    
539  2.9 Variants on Free-Surface     the master package diagram does not appear in the document
 - Delta.t mis-written (eq.2.73)  
 - Eq.Num missing (has been fixed since)  
 - u* is stored in gU (and not in gUnm1)  
 - Phi_nh in NH_VARS.h  
 - add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D,  
   INI_CG2D, INI_CG3D  
540    
541  2.9.1 Crank-Nickelson  Master list of packages (add this to beginning of chap 6)
 - link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater  
   
 2.9.2 NLFS  
 - eq.Nb are wrong in html  
 - 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi)  
542    
543  2.10.1 Notation  admtlm/               - autodiff (chapter 5)
544  - Area definition is not really used like this  aim/                  - retired
545    aim_compon_interf/    - 6.6 (no content yet)(Daniel + JM)
546    aim_ocn_coupler/      - 6.6 (no content yet)
547    aim_v23/              - 6.4.1 (content needs fixing - JM to do)
548    atm_common/           - nothing in this package (6.4.1 related)
549    autodiff/             - autodiff (chapter 5)
550    bulk_force/           - 6.3.3
551    cal/                  - 6.3.5
552    cd_code/              - chapter 2 (JM check add a reference to paper,
553                              mention parameter in data)
554    cfc/                  - not sure  (CNH to talk to Steph and Helen)
555    chronos/              - AM to check (not being used - Andrea to kill it)
556    compon_communic/      - 6.6 (no content yet)(Daniel + JM)
557    cost/                 - not sure, check with PH
558    ctrl/                 - not sure, check with PH
559    debug/                - JM may do something in chapter 7 (utilities)
560    diagnostics/          - 7.1
561    dic/                  - 6.7.2
562    ebm/                  - (check with PH)
563    ecco/                 - chapter 8
564    embed_files/          - add something to chapter 7
565    exch2/                - 6.2.2
566    exf/                  - 6.3.4
567    fizhi/                - 6.4.3
568    flt/                  - (PH check)
569    gchem/                - 6.7.1
570    generic_advdiff/      - in chapter 2 (JM check)
571    ggl90/                - nothing, (Martin?)
572    gmredi/               - in chapter 2 (JM check). also need
573                            Ferrari & Mc transition zone stuff (Samar doing this)
574                            get dfer to read this
575    grdchk/               - grdchk (chapter 5 - check with PH)
576    gridalt/              - 6.2.4
577    kpp/                  - 6.3.2
578    land/                 - 6.4.2 (not connected to code Rong's notes - JM to fix)
579    matrix/               - Samar
580    mdsio/                - 7.3.1
581    mnc/                  - 7.2.1
582    mom_common/           - in chapter 2 (JM check)
583    mom_fluxform/         - in chapter 2 (JM check)
584    mom_vecinv/           - in chapter 2 (JM check)
585    monitor/              - 7.4
586    my82/                 - nothing, (martin?)
587    obcs/                 - 6.3 (needs a check - ask PH to read)
588    ocn_compon_interf/    - 6.6 (no content yet)
589    offline/              - nothing, tutorials that need work but no package   section entry
590                            trivial to document (CNH to do)
591    opps/                 - nothing, (martin?)
592    pp81/                 - nothing, (martin?)
593    profiles/             - GAEL
594    ptracers/             - JM + SD + Martin to write something (nothing for this
595                              at the moment)
596                            AM has diagnostics table for this.
597    rbcs/                 - CNH to talk to steph
598    runclock/             - runclock - CNH
599    rw/                   - not sure - going to stay says JMC. quick IO calls
600                            JMC to write a quick note for that.
601    sbo/                  - text in sbo_descruption.tex but not linked into
602                            part6 - CNH
603    seaice/               - 6.5.2 - no equations, dimitris has promised some
604    shap_filt/            - chapter 2, JM to check
605    shelfice/             - nothing yet (martin?)
606    solver/               - empty (go away?)
607    sphere/               - chapter 5 or 8 (PH to check)
608    therm_seaice/         - empty (go away?)
609    thsice/               - 6.5.1 (JM to update?)
610    timeave/              - retiring......
611    zonal_filt/           - chapter 2 (JM to check)
612    
613  >> Ao : Area of the face orthogonal to "o" direction (o=u,v,w)  list an expeiment which uses package? CNH
614    
615    Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to  [DONE]Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started.
   the model variables) are used (e.g., see section 2.10.5)  
616    
617  2.10.5 Horizontal grid:  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997
618  - fig.2.8 : should use Aw,As consistently in this figure description,   Figure 6.8 is missing
   in the figure itself, as it is in the text.  
 - curvilinear:  
   to add: mention the angle of the grid direction relative to  
   Eastward, Northward direction.  
   + mention horizGridFile= in file "data" (PARM04)  
 - add cylindrical grid description  
    need to do a better job of relating model variables to this diagram  
619    
620    
621  2.11 Continuity & Horizontal Pressure gradient terms  >>>> From Andrea
  - mention that d.Phi/dr|s =g if using z coordinate  
  - eq. 2.90 not clear regarding \delta_k(P-E)  
  better to add the free surface eq: d.eta/dt = w_s + P-E  
622    
623  2.12 Hydrostatic balance  to do list for chap 7:
  - add ref to Atmosphere Appendix section (1.4) since Adcroft 2002  
    is hard to find  
  - add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H)  
     and in section 1.3.4: remove the 1.3.4.3.2 subsection:  
                        Quasi-nonhydrostatic Atmosphere  
624    
 2.13.2 Coriolis terms  
  - note: the discretization used when useEnergyConservingCoriolis=T    
    has no hFac and no Area and is still different from the form  
    described here (with Area & hFac);  
625    
626  2.13.5 Lateral dissipation  7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu"
627   - add description of how to use cosFactor & cosPower          the links are pointing to the proper place
  - add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4  
     o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags  
       in code need to explain why cos()3/2 turns out to be  
       scaling (not cos()2)  
628    
629  2.13.6 Vertical dissipation  7.5.1 - add Graphix to the list of stuff in utils/matlab
630   - mention the implicit vertical viscosity option and ref to section 2.5  7.5.2 - empty
  - add the parameter correspondence: Av <-> viscAr (and might change also  
    the notation to Ar)  
631    
 2.14 Vector invariant momentum equations  
  - indicate that the NH pieces (vertical momentum eq) are not yet coded  
    and that the NH code uses the flux form.  
632    
633  2.14.6 Horizontal dissipation -> Horizontal Divergence  andrea
634    
 2.14.7 Horizontal dissipation  
  - add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ    
    and A_D4,A_z4 <-> viscA4D,viscA4Z  
635    
636  2.16 & 2.17 & 2.18 :  9. Publications using MITgcm
637   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...
638       (check in support for more names)
639    
640  2.20.2 mercator, non-dimensional Equations:  10. Under development
 - does not use std notation  
 - would be better as an appendix of section 2.20:  
 (e.g changing the tile to:  
  Appendix: non-dimensional Equations on Spherical-Polar grid.)  
641    
 JM  
642    
643    Bibliography
644    
645  9. Model uses   tidy up from misc - .tex
    Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...  
    (check in support for more names)  

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