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Biblio - EH3 |
Biblio - EH3 |
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Rebuild and set to do cron build - DONE on hugo |
Rebuild and set to do cron build - DONE on hugo |
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To do |
To do |
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o HTML, scripts and front content |
o HTML, scripts and front content |
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- pick a URL |
- pick a URL: mitgcm.org/r2 <-- EH3's preferred base URL |
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TBD |
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- mitgcm.org/r2_web_testing/latest |
- mitgcm.org/r2_web_testing/latest |
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o add another short-cut for quick download |
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o --DONE-- add another short-cut for quick download |
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o --DONE-- add another short-cut |
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About |
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Installation |
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Contents |
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Overview |
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Tutorials (broken) |
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Browse Code |
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o --DONE-- words on http://mitgcm.org/r2_web_testing/latest change to |
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o add another short-cut |
o --DONE-- finite-volume doesn't leap to FV figure |
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About |
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Installation |
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Contents |
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Overview |
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Tutorials (broken) |
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Browse Code |
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o words on http://mitgcm.org/r2_web_testing/latest |
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change to |
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"access on-line Auser manual/A and Atable of contents/A |
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and browse the Aoverview section/A" |
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o finite-volume doesn't leap to FV figure |
o -- DONE ??? -- have another go at pnmcrop et al. |
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o have another go at pnmcrop et al. |
I've tried making a small change in latex2html which fixes |
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the oddball-lower-alignment issue that we were seeing with |
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most in-line expressions (that is, math embedded in text). |
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The fix results in some things being slightly raised but I |
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thin this is more asthetically pleasing than being somewhat |
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lowered as before. --EH3 |
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To view the altered alignment, see: |
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http://eddy.csail.mit.edu/r2/latest/ |
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o Need an empty package as part of distribution. Check out atm_common |
o Need an empty package as part of distribution. Check out atm_common |
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o Latex |
o Latex |
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Chapter 1 - CNH |
Chapter 1 - CNH |
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>> evaluated explicitly in time |
>> evaluated explicitly in time |
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<- Leave it general. |
<- Leave it general. |
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o Time-stepping outline |
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- what gets called when |
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2.2 rigid-lid: |
2.2 rigid-lid: |
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- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
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to stay closer to the code. |
to stay closer to the code. |
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- mention section 2.5 implicit-Time-stepping (for vertical viscosity) |
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE |
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2.3 linear free-surface: |
2.3 linear free-surface: |
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- add ref(+link) to S/R names: |
- add ref(+link) to S/R names: |
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- add ref(+link) to Crank-Nickelson section 2.9.1 |
- add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE |
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2.4 Adams-Bashforth |
2.4 Adams-Bashforth |
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- add stability diagrams (I have some figures that I can put) |
- add stability diagrams (I have some figures that I can put) <- DONE |
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- add link for var. forcing_In_AB |
- add link for var. forcing_In_AB and epsil_AB <- half DONE |
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- add S/R link for S/R ADAMS_BASHFORTH2 |
- add S/R link for S/R ADAMS_BASHFORTH2 <-DONE |
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2.5 Implicit time-stepping |
2.5 Implicit time-stepping |
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- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
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Almost all of the 'math mode' text is dropped down as subscripts |
Almost all of the 'math mode' text is dropped down as subscripts |
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3.10.3.1 - refers to figures and equations, links are broken |
3.11.3.1 - refers to figures and equations, links are broken |
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3.11.3.2 - line 43: link to equation is broken |
3.12.3.2 - line 43: link to equation is broken |
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- line 51-53: link to equation is broken |
- line 51-53: link to equation is broken |
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- there is some mess of text hanging around the end of this section. remove? reformat? |
- there is some mess of text hanging around the end of this section. remove? reformat? |
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3.12.4.1 - line 34 - link to equation is broken |
3.13.4.1 - line 34 - link to equation is broken |
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- lines 60,61 - 1st (take out the 'r' in the superscript) |
- lines 60,61 - 1st (take out the 'r' in the superscript) |
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3.13.2 - link to theta-equation is broken |
3.14.2 - link to theta-equation is broken |
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3.13.5.4 -- ALL of the bold links to variable names are broken |
3.14.5.4 -- ALL of the bold links to variable names are broken |
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line 34: link to equation is broken |
line 34: link to equation is broken |
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o Update basic intro with one and four layer gyres |
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- include advection options |
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- conservation analysis |
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- diagnostics |
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o Four degree adjoint |
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- both TAF and OpenAD based. |
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o Coupled with biogeo setup |
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- based on CCGS setup |
430 |
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>>>> From Ed |
>>>> From Ed |
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Here are the remaining bits for Chap 4 : |
Here are the remaining bits for Chap 4 : |
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Chapter 6 |
Chapter 6 |
453 |
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the master package diagram does not appear in the document |
the master package diagram does not appear in the document <- done |
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(<- needs an update: e.g. atm2d, salt_plume, shelfice ...) |
456 |
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Master list of packages (add this to beginning of chap 6) |
Master list of packages (add this to beginning of chap 6) |
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(<- needs an update: e.g. atm2d, salt_plume, shelfice ...) |
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admtlm/ - autodiff (chapter 5) |
admtlm/ - autodiff (chapter 5) |
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aim/ - retired |
aim/ - retired |
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exch2/ - 6.2.2 |
exch2/ - 6.2.2 |
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exf/ - 6.3.4 |
exf/ - 6.3.4 |
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fizhi/ - 6.4.3 |
fizhi/ - 6.4.3 |
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o Including FIZHI doc |
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- get things up to date |
487 |
flt/ - (PH check) |
flt/ - (PH check) |
488 |
gchem/ - 6.7.1 |
gchem/ - 6.7.1 |
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generic_advdiff/ - in chapter 2 (JM check) |
generic_advdiff/ - in chapter 2 (JM check) |
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timeave/ - retiring...... |
timeave/ - retiring...... |
530 |
zonal_filt/ - chapter 2 (JM to check) |
zonal_filt/ - chapter 2 (JM to check) |
531 |
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o Cost function packages |
533 |
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- floats, weights, profiles etc... |
534 |
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list an expeiment which uses package? CNH |
list an expeiment which uses package? CNH |
537 |
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6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
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===== Chapter 7 ===== [EH3 editing] : |
===== Chapter 7 ===== [EH3 editing] : |
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7.1.x - JMC: please add description of: |
+ JMC: please add description of: |
545 |
- diagstat |
- diagstat |
546 |
- new temporal averaging feature |
- new temporal averaging feature |
547 |
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7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) |
+ update the RW / MDSIO description |
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-> new meta file |
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-> list all RW S/R that one should use instead of calling directly MDSIO |
551 |
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+ add Graphix to the list of stuff in utils/matlab (Daniel) |
553 |
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+ get bathymetry pre-processing stuff from Patrick and then describe it |
555 |
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+ add something on spgrid mesh generator |
557 |
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o Grid generation |
558 |
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- more explanation and some step-by-step examples |
559 |
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- plotting grid examples |
560 |
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7.5.2 - get bathymetry pre-processing stuff from Patrick |
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and then describe it |
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562 |
add something on spgrid mesh generator (maybe)? |
+ add in gmaze PV calculation scripts plus write up on how it is calculated |
563 |
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http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/ |
564 |
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566 |
andrea |
andrea |
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10. Under development |
10. Under development |
574 |
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575 |
Constantinos LCML |
Constantinos LCML |
576 |
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o Legend/LCML examples and explanation |
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- examples and explanation! |
578 |
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579 |
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580 |
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Bibliography |
Bibliography |
582 |
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tidy up from misc - .tex |
tidy up from misc - .tex |
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Also |
586 |
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a link to the new manual |
588 |
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should appear on the front page (even if it's under construction). |
589 |
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updating: |
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http://mitgcm.org/r2_web_testing/latest/code_reference/callTree.html |
592 |
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which points to a 1.5 years old code. Would be good to generate a |
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new one, and even better, to try to keep it up-to-date. |
594 |
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