--- manual/manual_todo.txt 2006/06/28 17:21:21 1.41 +++ manual/manual_todo.txt 2006/07/02 18:12:45 1.46 @@ -26,6 +26,7 @@ Biblio - EH3 + Rebuild and set to do cron build - DONE on hugo To do @@ -42,31 +43,40 @@ o HTML, scripts and front content - - pick a URL - TBD + - pick a URL: mitgcm.org/r2 <-- EH3's preferred base URL - mitgcm.org/r2_web_testing/latest - o add another short-cut for quick download + + o --DONE-- add another short-cut for quick download + + o --DONE-- add another short-cut + About + Installation + Contents + Overview + Tutorials (broken) + Browse Code + + o --DONE-- words on http://mitgcm.org/r2_web_testing/latest change to - o add another short-cut - About - Installation - Contents - Overview - Tutorials (broken) - Browse Code - - o words on http://mitgcm.org/r2_web_testing/latest - change to - "access on-line Auser manual/A and Atable of contents/A - and browse the Aoverview section/A" + o --DONE-- finite-volume doesn't leap to FV figure - o finite-volume doesn't leap to FV figure + o -- DONE ??? -- have another go at pnmcrop et al. - o have another go at pnmcrop et al. + I've tried making a small change in latex2html which fixes + the oddball-lower-alignment issue that we were seeing with + most in-line expressions (that is, math embedded in text). + The fix results in some things being slightly raised but I + thin this is more asthetically pleasing than being somewhat + lowered as before. --EH3 + + To view the altered alignment, see: + + http://eddy.csail.mit.edu/r2/latest/ o Need an empty package as part of distribution. Check out atm_common + o Latex Chapter 1 - CNH @@ -260,16 +270,16 @@ - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" to stay closer to the code. -- mention section 2.5 implicit-Time-stepping (for vertical viscosity) +- mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE 2.3 linear free-surface: - add ref(+link) to S/R names: -- add ref(+link) to Crank-Nickelson section 2.9.1 +- add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE 2.4 Adams-Bashforth -- add stability diagrams (I have some figures that I can put) -- add link for var. forcing_In_AB -- add S/R link for S/R ADAMS_BASHFORTH2 +- add stability diagrams (I have some figures that I can put) <- DONE +- add link for var. forcing_In_AB and epsil_AB <- half DONE +- add S/R link for S/R ADAMS_BASHFORTH2 <-DONE 2.5 Implicit time-stepping - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R @@ -391,97 +401,19 @@ Almost all of the 'math mode' text is dropped down as subscripts -3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript - - is this experiment in the list from section 3.4??? -3.10.3.1 - refers to figures and equations, links are broken +3.11.3.1 - refers to figures and equations, links are broken -3.11.3.2 - line 43: link to equation is broken +3.12.3.2 - line 43: link to equation is broken - line 51-53: link to equation is broken - there is some mess of text hanging around the end of this section. remove? reformat? -3.12.4.1 - line 34 - link to equation is broken +3.13.4.1 - line 34 - link to equation is broken - lines 60,61 - 1st (take out the 'r' in the superscript) -3.13.2 - link to theta-equation is broken -3.13.5.4 -- ALL of the bold links to variable names are broken +3.14.2 - link to theta-equation is broken +3.14.5.4 -- ALL of the bold links to variable names are broken line 34: link to equation is broken -3.15.1 - reference to 'fourth experiment' should be removed - -3.16.4 - strange formatting, presence of '>' symbols - remove them - -3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 -3.17.3.1 - nothing filled in under file input/data - needs description - -3.18.2 - point to section 2 for details - need hyperlink - -3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! - section 3.5 has the 'build' directory in the example - -3.20.1 - link to doc at end of section points to this section -3.20.2 - link to doc at end of section points to this section - - offline - duplicate inputs, what is it, tidy up cfc v. - other offline. JM thinks these need tidying up. - -Which of the following are which tutorial? -adjustment.128x64x1 -adjustment.cs-32x32x1 -advect_cs -advect_xy -advect_xz -aim.5l_cs -aim.5l_Equatorial_Channel -aim.5l_LatLon -biogeo -bottom_ctrl_5x5 -cfc_example -cpl_aim+ocn -dome -exp2 -exp4 -exp5 -fizhi-cs-32x32x10 -fizhi-cs-aqualev20 -fizhi-gridalt-hs -flt_example -front_relax -global1x1_tot -global2x2_tot -global_ocean.90x40x15 -global_ocean.cs32x15 -global_ocean.cubed32x32x30 -global_ocean_ebm -global_with_exf -hs94.128x64x5 -hs94.1x64x5 -hs94.cs-32x32x5 -ideal_2D_oce -internal_wave -inverted_barometer -lab_sea -matrix_example -MLAdjust -natl_box -natl_box_adjoint -OpenAD -rotating_tank -solid-body.cs-32x32x1 -tidal_basin_2d -tutorial_baroclinic_gyre -tutorial_barotropic_gyre -tutorial_cfc_offline -tutorial_deep_convection -tutorial_global_oce_biogeo -tutorial_global_oce_in_p -tutorial_global_oce_latlon -tutorial_global_oce_optim -tutorial_held_suarez_cs -tutorial_offline -tutorial_plume_on_slope -tutorial_tracer_adjsens -vermix - >>>> From Ed Here are the remaining bits for Chap 4 : @@ -586,16 +518,18 @@ ===== Chapter 7 ===== [EH3 editing] : -7.1.x - JMC: please add description of: + + JMC: please add description of: - diagstat - new temporal averaging feature -7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) + + add Graphix to the list of stuff in utils/matlab (Daniel) + + + get bathymetry pre-processing stuff from Patrick and then describe it -7.5.2 - get bathymetry pre-processing stuff from Patrick - and then describe it + + add something on spgrid mesh generator -add something on spgrid mesh generator (maybe)? + + add in gmaze PV calculation scripts plus write up on how it is calculated + http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/ andrea