260 |
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261 |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
262 |
to stay closer to the code. |
to stay closer to the code. |
263 |
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) |
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE |
264 |
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265 |
2.3 linear free-surface: |
2.3 linear free-surface: |
266 |
- add ref(+link) to S/R names: |
- add ref(+link) to S/R names: |
267 |
- add ref(+link) to Crank-Nickelson section 2.9.1 |
- add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE |
268 |
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269 |
2.4 Adams-Bashforth |
2.4 Adams-Bashforth |
270 |
- add stability diagrams (I have some figures that I can put) |
- add stability diagrams (I have some figures that I can put) <- DONE |
271 |
- add link for var. forcing_In_AB |
- add link for var. forcing_In_AB and epsil_AB <- half DONE |
272 |
- add S/R link for S/R ADAMS_BASHFORTH2 |
- add S/R link for S/R ADAMS_BASHFORTH2 <-DONE |
273 |
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274 |
2.5 Implicit time-stepping |
2.5 Implicit time-stepping |
275 |
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
391 |
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392 |
Almost all of the 'math mode' text is dropped down as subscripts |
Almost all of the 'math mode' text is dropped down as subscripts |
393 |
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394 |
3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) |
3.11.3.1 - refers to figures and equations, links are broken |
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3.4.1 - links to the following experiments don't exist or are broken: |
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exp2 - should link to section 3.9 |
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hs94.cs-32x32x5 - link to section 3.12 |
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add 'convection' to the list, link to section 3.13 |
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add 'plume on slope` to the list, link to section 3.14 |
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add '??' link to section 3.15 |
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add 'dic_example on slope` to the list, link to section 3.16 |
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add '??' link to section 3.17 |
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add 'offline' and link to section 3.18 |
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clean up others and make links where they are needed |
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3.4.2 - text suggests to see section 2 for details about what is in the 'code' |
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and 'input' directories - should refer to the examples in this section |
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- add 'build' bullet - this is where the model is compiled and exectuable lives |
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3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options |
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as the place where they live (add a link?) |
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3.6.1 - Add some general 'approach' text - ie, output is controlled either by the |
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'data' file in the input directory or by the data.[pkg name] file for any |
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package running. And there is some default behavior when the 'state' dumps |
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are written. |
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3.6.1.2 - needs to be moved to inside section 3.6.2 |
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All the 'overview' sections need some reference to the name of the experiment in |
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the verification directory |
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3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript |
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- is this experiment in the list from section 3.4??? |
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3.10.3.1 - refers to figures and equations, links are broken |
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395 |
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396 |
3.11.3.2 - line 43: link to equation is broken |
3.12.3.2 - line 43: link to equation is broken |
397 |
- line 51-53: link to equation is broken |
- line 51-53: link to equation is broken |
398 |
- there is some mess of text hanging around the end of this section. remove? reformat? |
- there is some mess of text hanging around the end of this section. remove? reformat? |
399 |
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400 |
3.12.4.1 - line 34 - link to equation is broken |
3.13.4.1 - line 34 - link to equation is broken |
401 |
- lines 60,61 - 1st (take out the 'r' in the superscript) |
- lines 60,61 - 1st (take out the 'r' in the superscript) |
402 |
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403 |
3.13.2 - link to theta-equation is broken |
3.14.2 - link to theta-equation is broken |
404 |
3.13.5.4 -- ALL of the bold links to variable names are broken |
3.14.5.4 -- ALL of the bold links to variable names are broken |
405 |
line 34: link to equation is broken |
line 34: link to equation is broken |
406 |
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3.15.1 - reference to 'fourth experiment' should be removed |
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3.16.4 - strange formatting, presence of '>' symbols - remove them |
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3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 |
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3.17.3.1 - nothing filled in under file input/data - needs description |
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3.18.2 - point to section 2 for details - need hyperlink |
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3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! |
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section 3.5 has the 'build' directory in the example |
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3.20.1 - link to doc at end of section points to this section |
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3.20.2 - link to doc at end of section points to this section |
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offline - duplicate inputs, what is it, tidy up cfc v. |
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other offline. JM thinks these need tidying up. |
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Which of the following are which tutorial? |
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adjustment.128x64x1 |
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adjustment.cs-32x32x1 |
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advect_cs |
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advect_xy |
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advect_xz |
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aim.5l_cs |
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aim.5l_Equatorial_Channel |
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aim.5l_LatLon |
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biogeo |
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bottom_ctrl_5x5 |
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cfc_example |
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cpl_aim+ocn |
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dome |
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exp2 |
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exp4 |
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exp5 |
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fizhi-cs-32x32x10 |
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fizhi-cs-aqualev20 |
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fizhi-gridalt-hs |
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flt_example |
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front_relax |
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global1x1_tot |
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global2x2_tot |
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global_ocean.90x40x15 |
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global_ocean.cs32x15 |
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global_ocean.cubed32x32x30 |
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global_ocean_ebm |
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global_with_exf |
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hs94.128x64x5 |
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hs94.1x64x5 |
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hs94.cs-32x32x5 |
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ideal_2D_oce |
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internal_wave |
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inverted_barometer |
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lab_sea |
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matrix_example |
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MLAdjust |
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natl_box |
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natl_box_adjoint |
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OpenAD |
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rotating_tank |
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solid-body.cs-32x32x1 |
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tidal_basin_2d |
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tutorial_baroclinic_gyre |
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tutorial_barotropic_gyre |
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tutorial_cfc_offline |
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tutorial_deep_convection |
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tutorial_global_oce_biogeo |
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tutorial_global_oce_in_p |
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tutorial_global_oce_latlon |
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tutorial_global_oce_optim |
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tutorial_held_suarez_cs |
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tutorial_offline |
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tutorial_plume_on_slope |
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tutorial_tracer_adjsens |
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vermix |
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407 |
>>>> From Ed |
>>>> From Ed |
408 |
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409 |
Here are the remaining bits for Chap 4 : |
Here are the remaining bits for Chap 4 : |
519 |
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520 |
add something on spgrid mesh generator (maybe)? |
add something on spgrid mesh generator (maybe)? |
521 |
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522 |
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add in gmaze PV calculation scripts plus write up on how it is calculated |
523 |
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http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/ |
524 |
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525 |
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526 |
andrea |
andrea |
527 |
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