/[MITgcm]/manual/manual_todo.txt
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revision 1.38 by cnh, Wed Jun 28 15:36:02 2006 UTC revision 1.40 by molod, Wed Jun 28 16:47:01 2006 UTC
# Line 233  In general: Line 233  In general:
233  - would be nice to have an active link to the fortran-file  - would be nice to have an active link to the fortran-file
234    for all the S/R & eq.Number in the "calling-tree" boxes    for all the S/R & eq.Number in the "calling-tree" boxes
235  - search for CALC_MOM_RHS and replace it by the appropriate S/R  - search for CALC_MOM_RHS and replace it by the appropriate S/R
236    (mom_flux_form, mom_vecinv, dynamics)    (mom_flux_form, mom_vecinv, dynamics) <- DONE
237  - Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h})  - Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h})
238  was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}}  was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}}
239  in section.2, \vec{\bf v} is used instead and 3.D velocity vector is  in section.2, \vec{\bf v} is used instead and 3.D velocity vector is
# Line 244  at the beginning of section.2 and to men Line 244  at the beginning of section.2 and to men
244  the 2 sections.  the 2 sections.
245    
246  in content: Horizontal Dissipation: 2 times in vector-invariant section  in content: Horizontal Dissipation: 2 times in vector-invariant section
247    <- DONE
248    
249  2.1 time-stepping (part2/time_stepping.tex)  2.1 time-stepping (part2/time_stepping.tex)
250    
# Line 252  in content: Horizontal Dissipation: 2 ti Line 253  in content: Horizontal Dissipation: 2 ti
253  >> In all the above configurations it is also possible to substitute the  >> In all the above configurations it is also possible to substitute the
254  >> Adams-Bashforth with an alternative time-stepping scheme for terms  >> Adams-Bashforth with an alternative time-stepping scheme for terms
255  >> evaluated explicitly in time  >> evaluated explicitly in time
256    <- Leave it general.
257    
258    
259  2.2 rigid-lid:  2.2 rigid-lid:
# Line 285  in content: Horizontal Dissipation: 2 ti Line 287  in content: Horizontal Dissipation: 2 ti
287  - add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D  - add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D
288    
289  2.9 Variants on Free-Surface  2.9 Variants on Free-Surface
290  - Delta.t mis-written (eq.2.73)  - Delta.t mis-written (eq.2.73) <- DONE
291  - Eq.Num missing (has been fixed since)  - Eq.Num missing <- DONE
292  - u* is stored in gU (and not in gUnm1)  - u* is stored in gU (and not in gUnm1) <- DONE
293  - Phi_nh in NH_VARS.h  - Phi_nh in NH_VARS.h <- DONE
294  - add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D,  - add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D,
295    INI_CG2D, INI_CG3D    INI_CG2D, INI_CG3D
296    
# Line 298  in content: Horizontal Dissipation: 2 ti Line 300  in content: Horizontal Dissipation: 2 ti
300  2.9.2 NLFS  2.9.2 NLFS
301  - eq.Nb are wrong in html  - eq.Nb are wrong in html
302  - 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi)  - 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi)
303     <- DONE
304    
305  2.10.1 Notation  2.10.1 Notation
306  - Area definition is not really used like this  - Area definition is not really used like this
# Line 306  in content: Horizontal Dissipation: 2 ti Line 309  in content: Horizontal Dissipation: 2 ti
309    
310    Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to    Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to
311    the model variables) are used (e.g., see section 2.10.5)    the model variables) are used (e.g., see section 2.10.5)
312    <- DONE
313    
314  2.10.5 Horizontal grid:  2.10.5 Horizontal grid:
315  - fig.2.8 : should use Aw,As consistently in this figure description,  - fig.2.8 : should use Aw,As consistently in this figure description,
316    in the figure itself, as it is in the text.    in the figure itself, as it is in the text. <- DONE
317  - curvilinear:  - curvilinear:
318    to add: mention the angle of the grid direction relative to    to add: mention the angle of the grid direction relative to
319    Eastward, Northward direction.    Eastward, Northward direction.
# Line 360  in content: Horizontal Dissipation: 2 ti Line 364  in content: Horizontal Dissipation: 2 ti
364    
365  2.16 & 2.17 & 2.18 :  2.16 & 2.17 & 2.18 :
366   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options
367   - fix equations 2.202 & 2.203 (thanks to Martin)   - fix equations 2.202 & 2.203 (thanks to Martin) <- DONE
368    
369  2.20.2 mercator, non-dimensional Equations:  2.20.2 mercator, non-dimensional Equations:
370  - does not use std notation  - does not use std notation
# Line 368  in content: Horizontal Dissipation: 2 ti Line 372  in content: Horizontal Dissipation: 2 ti
372  (e.g changing the tile to:  (e.g changing the tile to:
373  - talk to Baylor  - talk to Baylor
374   Appendix: non-dimensional Equations on Spherical-Polar grid.)   Appendix: non-dimensional Equations on Spherical-Polar grid.)
375     <- No (Chris said)
376    
377    
378  Diagrams of grid locations etc.... and what variables and output files  Diagrams of grid locations etc.... and what variables and output files
# Line 386  Chapter 3 Line 391  Chapter 3
391    
392  Almost all of the 'math mode' text is dropped down as subscripts  Almost all of the 'math mode' text is dropped down as subscripts
393    
 3.1 - don't need a link to the outside of the document (remove it)  
     - link to htdig is broken  
   
 3.2.1 - link at bottom to source code points to section 3.2.1  
    (ie, to itself) - link should point to cvs code archive  
   
 3.2.2.1  - ('upgrading from an earlier version') belongs under  
       the cvs part, ie, should be 3.2.1.1  
   
 3.3 - remove reference to 'diags' section under MITgcm  
     - remove reference to 'exe' and 'bin' sections also  
       (remove the .cvsignore file under these directories in cvs)  
     - add a 'jobs' section, and a description as examples of run scripts  
     - add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions  
     - under 'tools' add a reference to 'build_options'. refer to the 'optfiles'  
     - under 'tools' the adjoint points to section 5 - this is now section 8  
       (but should be a floating reference)  
     - under 'utils' add a reference to exch2 - stuff for different resolutions  
     - the description of the pkg section refers directly to  
       section 3. should be section 6 (actually should be a floating reference)  
   
394  3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10)  3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10)
395  3.4.1 - links to the following experiments don't exist or are broken:  3.4.1 - links to the following experiments don't exist or are broken:
396            exp2 - should link to section 3.9            exp2 - should link to section 3.9
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