/[MITgcm]/manual/manual_todo.txt
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revision 1.23 by cnh, Thu Apr 6 20:54:14 2006 UTC revision 1.38 by cnh, Wed Jun 28 15:36:02 2006 UTC
# Line 1  Line 1 
1    Editors
2    
3     Overall       - JM, AM, PH, CNH, EH3
4    
5     Front content - EH3
6    
7     Chapter 1     - CNH
8    
9     Chapter 2     - JMC
10    
11     Chapter 3     -  AM
12    
13     Chapter 4     - CNH
14    
15     Chapter 5     -  PH
16    
17     Chapter 6     -  AM
18    
19     Chapter 7     - EH3
20    
21     Chapter 8     -  PH
22    
23     Chapter 9     - CNH (Applications)
24    
25     Chapter 10    - JMC (Under development chapter)
26    
27     Biblio        - EH3
28    
29  Rebuild and set to do cron build - DONE on hugo  Rebuild and set to do cron build - DONE on hugo
30    
31  To do  To do
# Line 8  To do Line 36  To do
36      Add an "Under development, chapter" - shortish description of what      Add an "Under development, chapter" - shortish description of what
37      is available (last chapter)      is available (last chapter)
38    
39      - add in example latex for formatting author names in different pieces.
40        this aknowledges peoples contributions and gives ref for who
41        to talk to.
42    
43  o HTML, scripts and front content  o HTML, scripts and front content
44    
# Line 25  o HTML, scripts and front content Line 56  o HTML, scripts and front content
56        Tutorials (broken)        Tutorials (broken)
57        Browse Code        Browse Code
58    
     o mitgcm.org (front content) [DONE]  
       Get Code (where does this go to?)  
       get rid of * CVS current bullet  
       make HTML-enabled CVS code browser leap to MITgcm/MITgcm  
   
     o authors  
       John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen,  
       Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos,  
       Gael - others?  
   
59      o words on http://mitgcm.org/r2_web_testing/latest      o words on http://mitgcm.org/r2_web_testing/latest
60        change to        change to
61         "access on-line Auser manual/A and Atable of contents/A         "access on-line Auser manual/A and Atable of contents/A
# Line 67  o Latex Line 88  o Latex
88    
89        o List of key papers needs to be updated and reformatted        o List of key papers needs to be updated and reformatted
90    
   
91        o Global atmosphere: `Held Suarez',        o Global atmosphere: `Held Suarez',
92          update Adcroft reference          update Adcroft reference
93          fix up ingrid link and frame (ingrid movies seem to be broken?)          fix up ingrid link and frame (ingrid movies seem to be broken?)
# Line 185  o Latex Line 205  o Latex
205            o coupled aqua, ridge world etc...            o coupled aqua, ridge world etc...
206              - links to ingrid output              - links to ingrid output
207                get stuff from Daniel                get stuff from Daniel
208                  Davids donut movie
209    
210            o constrained lab simulation            o constrained lab simulation
211              - links to ingrid output for model and lab              - links to ingrid output for model and lab
# Line 339  in content: Horizontal Dissipation: 2 ti Line 360  in content: Horizontal Dissipation: 2 ti
360    
361  2.16 & 2.17 & 2.18 :  2.16 & 2.17 & 2.18 :
362   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options
363     - fix equations 2.202 & 2.203 (thanks to Martin)
364    
365  2.20.2 mercator, non-dimensional Equations:  2.20.2 mercator, non-dimensional Equations:
366  - does not use std notation  - does not use std notation
# Line 346  in content: Horizontal Dissipation: 2 ti Line 368  in content: Horizontal Dissipation: 2 ti
368  (e.g changing the tile to:  (e.g changing the tile to:
369  - talk to Baylor  - talk to Baylor
370   Appendix: non-dimensional Equations on Spherical-Polar grid.)   Appendix: non-dimensional Equations on Spherical-Polar grid.)
371    
372    
373    Diagrams of grid locations etc.... and what variables and output files
374    and/or netcdf variable names are not very easy to figure out and follow.
375    It would be good to redo and extend these diagrams and align with GRID.h
376    content.
377    
378    
379  JM  JM
# Line 358  Chapter 3 Line 386  Chapter 3
386    
387  Almost all of the 'math mode' text is dropped down as subscripts  Almost all of the 'math mode' text is dropped down as subscripts
388    
 divide chapter 3 more clearly into 2 sections?  
    (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and  
     then 3.19 and 3.20 are informational again - rearrange subsections?)  
 [DONE]  
   
389  3.1 - don't need a link to the outside of the document (remove it)  3.1 - don't need a link to the outside of the document (remove it)
390      - link to htdig is broken      - link to htdig is broken
391    
# Line 408  divide chapter 3 more clearly into 2 sec Line 431  divide chapter 3 more clearly into 2 sec
431          are written.          are written.
432  3.6.1.2 - needs to be moved to inside section 3.6.2  3.6.1.2 - needs to be moved to inside section 3.6.2
433    
 3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18)  
       underneath this one and leave the text for 3.7 in place  
   
434  All the 'overview' sections need some reference to the name of the experiment in  All the 'overview' sections need some reference to the name of the experiment in
435  the verification directory  the verification directory
436    
# Line 448  the verification directory Line 468  the verification directory
468                 other offline. JM thinks these need tidying up.                 other offline. JM thinks these need tidying up.
469    
470  Which of the following are which tutorial?  Which of the following are which tutorial?
471  ! MLAdjust  adjustment.128x64x1
 adjust_nlfs.cs-32x32x1  
 aim.5l_XZ_Equatorial_Slice  
 biogeo  
 aim.5l_zon-ave  
 coupled_ucla  
 cfc_offline  
 exp3  
 global2x2_tot  
 global1x1_tot  
 global_ocean.cubed_wEXF  
 global_with_CFC11  
 goz  
 gop  
 natl_box_obcs  
 natl_box_forward  
 spinup_optim  
 tutorial_held_suarez_cs  
 vero  
 inverted_barometer  
 global_ocean.cubed32x32x30  
 exp1  
 advect_cs  
 dic_example  
 fizhi-gridalt-hs  
 global_ocean_pressure  
 matrix_example  
 exp4  
 solid-body.cs-32x32x1  
 cfc_example  
 flt_example  
472  adjustment.cs-32x32x1  adjustment.cs-32x32x1
473    advect_cs
474    advect_xy
475  advect_xz  advect_xz
476  rotating_tank  aim.5l_cs
477  ideal_2D_oce  aim.5l_Equatorial_Channel
 global_ocean.90x40x15  
 front_relax  
478  aim.5l_LatLon  aim.5l_LatLon
479  lab_sea  biogeo
480  hs94.cs-32x32x5  bottom_ctrl_5x5
481  global_with_exf  cfc_example
482    cpl_aim+ocn
483    dome
484  exp2  exp2
485  tidal_basin_2d  exp4
 fizhi-cs-32x32x10  
486  exp5  exp5
487    fizhi-cs-32x32x10
488    fizhi-cs-aqualev20
489    fizhi-gridalt-hs
490    flt_example
491    front_relax
492    global1x1_tot
493    global2x2_tot
494    global_ocean.90x40x15
495  global_ocean.cs32x15  global_ocean.cs32x15
496  OpenAD  global_ocean.cubed32x32x30
 hs94.1x64x5  
 fizhi-cs-aqualev10  
 exp0  
 dome  
 aim.5l_Equatorial_Channel  
 aim.5l_cs  
 hs94.128x64x5  
 prm  
 carbon  
 plume_on_slope  
 natl_box_adjoint  
 vermix  
 cpl_aim+ocn  
497  global_ocean_ebm  global_ocean_ebm
498    global_with_exf
499    hs94.128x64x5
500    hs94.1x64x5
501    hs94.cs-32x32x5
502    ideal_2D_oce
503  internal_wave  internal_wave
504  advect_xy  inverted_barometer
505    lab_sea
506    matrix_example
507    MLAdjust
508  natl_box  natl_box
509  adjustment.128x64x1  natl_box_adjoint
510    OpenAD
511    rotating_tank
512    solid-body.cs-32x32x1
513    tidal_basin_2d
514    tutorial_baroclinic_gyre
515    tutorial_barotropic_gyre
516    tutorial_cfc_offline
517    tutorial_deep_convection
518    tutorial_global_oce_biogeo
519    tutorial_global_oce_in_p
520    tutorial_global_oce_latlon
521    tutorial_global_oce_optim
522    tutorial_held_suarez_cs
523    tutorial_offline
524    tutorial_plume_on_slope
525    tutorial_tracer_adjsens
526    vermix
527    
528  >>>> From Ed  >>>> From Ed
529    
# Line 612  zonal_filt/           - chapter 2 (JM to Line 623  zonal_filt/           - chapter 2 (JM to
623    
624  list an expeiment which uses package? CNH  list an expeiment which uses package? CNH
625    
 [DONE]Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started.  
   
626  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997
627   Figure 6.8 is missing   Figure 6.8 is missing
628    
629    
630  >>>> From Andrea  =====  Chapter 7  =====  [EH3 editing] :
631    
632  to do list for chap 7:  7.1.x - JMC: please add description of:
633            - diagstat
634            - new temporal averaging feature
635    
636    7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel)
637    
638  7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu"  7.5.2 - get bathymetry pre-processing stuff from Patrick
639          the links are pointing to the proper place          and then describe it
640    
641  7.5.1 - add Graphix to the list of stuff in utils/matlab  add something on spgrid mesh generator (maybe)?
 7.5.2 - empty  
642    
643    
644  andrea  andrea
645    
646    
647  9. Model uses  9. Publications using MITgcm --> "Previous Applications of MITgcm"
648     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...
649     (check in support for more names)     (check in support for more names)
650    
651    10. Under development
652    
653    Constantinos LCML
654    
655    
656    Bibliography
657    
658     tidy up from misc - .tex

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